genome.fa.s9058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009058.1 Hibiscus syriacus cultivar Beakdansim tig00112473_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45629

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542--661	3	41.7	3	80	11	144	62	2	0	34	1.14
541--661	42	2.9	43	86	6	160	62	2	0	33	1.14
542--661	53	2.3	53	88	5	174	62	2	0	34	1.14
1135--1176	21	2.0	21	86	4	59	40	0	0	59	0.97
12399--12426	2	14.0	2	100	0	56	50	0	0	50	1.00
12731--12815	42	2.1	41	89	8	129	55	9	8	27	1.60
13237--13336	52	1.9	52	83	0	128	20	22	23	35	1.96
13926--13957	11	2.9	11	95	0	55	34	9	12	43	1.75
13271--16684	345	10.1	328	83	9	1085	30	19	16	33	1.94
14494--16927	345	7.1	345	97	0	4645	29	20	16	33	1.94
14494--16927	687	3.5	690	97	0	4645	29	20	16	33	1.94
17379--17404	13	2.0	13	100	0	52	38	23	15	23	1.92
17507--17537	6	5.2	6	100	0	62	83	0	0	16	0.64
18355--18399	23	2.0	23	90	0	72	53	13	15	17	1.73
21440--21515	36	2.1	36	85	7	100	47	1	3	47	1.29
22939--22990	20	2.6	20	96	0	95	38	26	13	21	1.90
22980--23079	21	4.8	20	71	8	65	37	23	19	21	1.95
23044--23098	21	2.7	20	88	2	74	45	25	18	10	1.82
23066--23239	20	8.6	20	83	5	217	34	26	19	19	1.96
23066--23239	60	2.9	60	85	0	249	34	26	19	19	1.96
23621--23691	33	2.2	33	92	0	115	11	22	18	47	1.80
23812--23866	14	3.6	14	73	21	56	40	23	27	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23812--23882	33	2.2	33	92	0	115	42	25	23	8	1.82
23878--23975	19	5.7	19	70	22	81	10	24	22	42	1.84
23900--23989	14	5.7	14	74	23	81	8	25	23	42	1.83
23883--23997	33	3.5	33	95	0	212	9	24	20	45	1.81
25704--26176	185	2.5	186	99	0	930	21	12	19	46	1.83
25704--26176	93	5.1	93	98	0	930	21	12	19	46	1.83
26220--26348	19	7.3	19	75	17	125	45	28	17	8	1.77
26256--26348	33	2.8	32	91	4	150	46	27	18	7	1.76
26220--26348	52	2.5	52	74	14	140	45	28	17	8	1.77
26344--26478	19	7.6	19	75	16	128	11	19	23	45	1.82
26366--26422	14	3.7	14	77	20	60	10	21	22	45	1.82
26349--26441	33	2.8	33	95	0	168	10	20	21	47	1.80
28379--28414	14	2.6	14	95	0	63	33	0	22	44	1.53
28521--28622	19	5.6	19	84	13	151	44	17	23	14	1.86
28629--28956	33	9.5	33	78	15	217	14	20	18	46	1.83
28651--28956	19	17.4	19	79	16	356	14	19	18	47	1.82
28651--28890	71	3.4	71	83	11	355	15	20	17	47	1.83
28651--28928	52	5.2	52	88	7	327	14	20	17	47	1.82
31259--31283	12	2.1	12	100	0	50	0	28	0	72	0.86
31458--31504	24	2.0	24	87	8	69	38	21	14	25	1.92
32188--32543	20	17.8	20	88	1	354	19	19	26	34	1.96
32194--32543	40	8.8	40	90	1	456	20	19	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32194--32543	60	5.8	60	87	3	456	20	19	26	34	1.96
32766--32791	7	3.7	7	100	0	52	0	69	0	30	0.89
37581--37656	20	3.7	20	94	3	125	28	25	26	19	1.99
37690--37733	22	2.0	22	86	0	61	29	29	27	13	1.94
38994--39208	103	2.1	103	94	0	376	26	13	23	37	1.92
39224--39315	23	4.0	23	84	0	121	20	26	25	28	1.99
39344--39375	17	1.9	17	93	6	57	28	25	6	40	1.79
39643--39677	16	2.2	16	90	10	54	31	0	25	42	1.55
43431--43530	28	3.5	28	68	8	85	48	9	0	43	1.34
43419--43530	56	2.0	58	94	3	201	47	8	0	43	1.34
43471--43646	73	2.3	77	86	4	234	43	12	2	40	1.57

Tables:   1

The End!