Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009059.1 Hibiscus syriacus cultivar Beakdansim tig00112476_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66977

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1276--1326
23
2.2
24
85
3
68
70
1
0
27
0.98
1314--1357
22
1.9
23
86
9
63
54
9
0
36
1.32
1410--1517
34
3.2
34
79
9
96
45
11
5
37
1.63
1435--1526
34
2.7
34
86
8
118
45
8
6
39
1.61
1431--1612
34
5.4
34
73
19
116
44
6
4
45
1.48
1434--1568
66
2.0
70
84
5
179
43
6
5
43
1.55
2278--3213
84
11.5
82
75
8
845
24
21
24
29
1.99
2231--3172
164
5.8
162
89
3
1324
24
21
24
29
1.99
2231--3172
324
2.9
325
92
2
1500
24
21
24
29
1.99
9411--9446
9
3.9
10
89
10
51
75
0
0
25
0.81
9547--9697
36
4.1
37
76
12
116
45
8
5
40
1.57
9499--9673
72
2.4
73
81
6
194
45
9
5
38
1.61
9623--9647
12
2.1
12
100
0
50
44
8
8
40
1.63
9568--9769
38
5.5
37
78
16
176
45
5
3
45
1.46
19725--19776
26
2.0
26
88
7
79
32
9
5
51
1.58
22454--22488
18
1.9
18
88
11
54
11
5
28
54
1.59
25451--25499
18
2.7
19
84
9
66
40
2
2
55
1.23
25755--25782
14
2.0
14
100
0
56
57
14
7
21
1.61
27658--27695
7
5.4
7
96
0
67
26
26
28
18
1.98
27692--27754
5
11.8
5
80
12
72
6
22
52
19
1.68
27685--27771
22
4.0
22
98
0
165
10
22
48
18
1.78
27770--27856
19
4.6
18
78
15
77
28
29
26
14
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27800--27877
20
3.9
19
80
12
86
30
25
26
16
1.97
27769--27876
29
3.7
28
76
14
94
29
27
26
15
1.96
27774--27877
10
10.8
9
78
10
73
29
27
25
16
1.97
35021--35058
7
5.4
7
96
0
67
26
26
28
18
1.98
35055--35116
5
11.8
5
79
16
63
6
22
51
19
1.69
35048--35133
22
4.0
22
96
1
156
10
23
47
18
1.79
35130--35228
9
10.3
9
77
10
81
29
27
27
16
1.97
35155--35229
29
2.5
31
89
8
120
29
26
26
17
1.97
35130--35228
19
5.2
19
76
17
80
29
27
27
16
1.97
38196--38379
99
1.9
97
90
2
296
28
11
16
43
1.83
44397--44507
34
3.2
35
85
11
147
31
4
19
44
1.71
48331--48373
21
2.0
21
81
0
50
30
30
25
13
1.94
48331--48499
65
2.5
66
84
5
207
28
27
26
17
1.98
48864--48921
30
1.9
30
89
0
89
41
3
18
36
1.68
49136--49199
22
2.9
22
97
2
119
18
26
28
26
1.98
55148--55190
21
2.0
21
81
0
50
30
30
25
13
1.94
55170--55314
65
2.3
63
84
8
177
28
26
27
16
1.97
55673--55731
31
1.9
31
92
0
100
38
3
20
37
1.69
55939--56006
22
3.0
22
97
2
127
19
26
27
26
1.99
57882--57999
34
3.3
37
83
12
149
30
5
19
44
1.72

Tables:   1

The End!