genome.fa.s906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000906.1 Hibiscus syriacus cultivar Beakdansim tig00001788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46660

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7725--7790	24	2.8	24	74	4	62	45	18	16	19	1.86
12202--12291	24	3.8	24	80	5	83	50	14	13	22	1.77
16898--16987	24	3.8	24	80	0	81	50	15	13	21	1.78
16946--16999	24	2.2	25	74	9	58	46	12	18	22	1.83
19173--19205	17	1.9	17	93	0	57	27	18	12	42	1.85
26985--27013	2	14.5	2	100	0	58	48	0	0	51	1.00
27541--27599	26	2.3	26	90	0	100	45	3	1	49	1.28
27544--27617	26	2.8	26	85	2	94	45	4	5	44	1.45
28147--28205	29	2.0	30	83	9	77	35	1	10	52	1.45
28229--28301	20	3.7	20	76	16	64	71	4	1	23	1.11
30901--30950	25	2.0	26	84	7	68	54	12	6	28	1.60
33484--33857	109	3.4	109	84	4	366	28	24	16	30	1.96
33494--33863	55	6.8	55	77	8	312	29	24	15	30	1.96
33551--33863	55	5.7	55	79	7	316	30	25	15	29	1.96
33429--34383	51	17.9	55	75	12	567	25	24	18	31	1.97
33834--34372	207	2.6	204	84	7	647	23	24	19	32	1.98
33820--34371	156	3.5	153	83	8	618	23	25	19	32	1.97
34753--34982	36	6.4	36	87	2	275	20	19	23	36	1.95
34753--34991	108	2.2	109	84	4	306	20	19	23	37	1.94
36173--36425	125	2.0	125	86	1	355	24	24	17	33	1.96
44786--44825	13	3.1	13	79	13	55	77	2	17	2	0.99
44994--45107	41	2.7	43	84	2	142	31	13	19	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45146--45246	44	2.3	43	81	10	123	26	14	23	34	1.94
45379--45438	21	2.8	21	87	12	79	51	21	5	21	1.66

Tables:   1

The End!