Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009060.1 Hibiscus syriacus cultivar Beakdansim tig00112481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108527

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
881--1066
99
1.9
98
88
4
284
28
11
16
43
1.82
7094--7204
35
3.1
35
87
6
152
31
4
18
45
1.70
11031--11073
21
2.0
21
81
0
50
30
30
25
13
1.94
11031--11201
67
2.6
67
86
3
220
28
27
26
17
1.98
11568--11625
30
1.9
30
89
0
89
41
3
18
36
1.68
11840--11907
22
3.0
22
97
2
127
19
26
27
26
1.99
17936--17978
21
2.0
21
81
0
50
30
30
25
13
1.94
17936--18108
67
2.6
67
86
4
215
28
27
26
17
1.98
18475--18532
30
1.9
30
92
0
98
39
3
20
36
1.70
18747--18814
22
3.0
22
97
2
127
19
26
27
26
1.99
20736--20796
21
3.2
21
65
29
64
31
4
21
42
1.74
20735--20845
35
3.1
35
89
6
161
31
4
19
44
1.71
22143--22454
155
2.0
156
99
0
617
42
16
14
27
1.86
25340--25589
123
2.0
122
95
3
450
32
22
16
29
1.96
31581--31624
19
2.4
19
84
3
54
40
0
18
40
1.50
38814--38844
5
6.2
5
100
0
62
58
0
0
41
0.98
46462--46502
16
2.6
16
84
3
57
26
19
14
39
1.90
47023--47082
31
1.9
32
86
3
86
31
10
13
45
1.76
47532--47561
15
2.0
15
100
0
60
46
0
6
46
1.29
49298--49344
20
2.4
19
86
10
67
55
6
17
21
1.64
48904--49377
181
2.6
183
88
2
686
43
13
16
26
1.85
51543--51616
21
3.5
21
96
0
130
44
8
31
16
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53445--53503
25
2.4
25
100
0
118
38
10
13
37
1.79
59983--60049
31
2.3
26
69
23
62
25
29
22
22
1.99
60367--60402
15
2.4
15
100
0
72
27
25
22
25
2.00
70430--70460
16
1.9
16
93
0
53
70
0
0
29
0.87
70957--71003
20
2.4
19
79
10
58
53
8
17
21
1.70
70754--71216
181
2.5
181
89
1
658
42
13
16
27
1.86
71138--71184
20
2.4
19
79
10
58
53
8
17
21
1.70
73414--73478
21
3.1
21
93
0
103
41
10
30
16
1.83
73512--73577
33
2.0
33
100
0
132
30
0
48
21
1.50
75655--76637
200
4.9
200
96
0
1727
35
14
18
31
1.91
78114--78171
6
9.7
6
84
0
62
39
6
32
20
1.79
78114--78171
12
4.8
12
89
0
80
39
6
32
20
1.79
79378--79964
181
3.2
183
95
0
1043
34
14
17
33
1.90
79838--80084
120
2.1
120
94
0
431
32
13
15
38
1.87
79657--80249
303
2.0
301
95
0
1060
34
14
16
34
1.89
83587--83836
87
2.9
87
93
1
430
32
13
10
44
1.76
83758--83802
23
2.0
23
86
0
63
37
15
8
37
1.79
86903--86953
25
2.0
26
88
11
79
39
33
11
15
1.84
86946--87003
2
30.5
2
83
10
59
56
0
0
43
0.99
88150--88226
37
2.1
36
83
9
93
46
1
3
48
1.28
90283--90341
31
1.9
31
96
0
109
44
5
6
44
1.52
90366--90775
22
18.6
22
87
5
535
48
9
0
41
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90740--90789
12
4.3
12
72
10
50
52
2
2
44
1.24
92022--92047
2
13.0
2
100
0
52
50
0
0
50
1.00
95088--95121
2
17.0
2
100
0
68
50
0
0
50
1.00
96964--97013
17
2.9
16
80
19
57
70
2
6
22
1.20
97506--97539
16
2.1
16
88
0
50
47
2
2
47
1.32
97583--97616
16
2.0
18
88
11
54
26
2
5
64
1.30
102039--102128
47
1.9
48
84
8
123
25
24
16
33
1.96
106810--106920
48
2.3
48
86
9
147
50
16
11
21
1.76
106817--106920
24
4.3
24
76
10
106
50
16
12
20
1.76

Tables:   1

The End!