Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009061.1 Hibiscus syriacus cultivar Beakdansim tig00112482_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76623
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:1784 original size:22 final size:22
Alignment explanation
Indices: 1759--1804 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
1749 AATTCTATTG
*
1759 TATTGTTTGAAAAATGA-TTTAT
1 TATT-TTTCAAAAATGAGTTTAT
*
1781 TATTTTTCAAAAATTAGTTTAT
1 TATTTTTCAAAAATGAGTTTAT
1803 TA
1 TA
1805 AAAGAAACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.52
Consensus pattern (22 bp):
TATTTTTCAAAAATGAGTTTAT
Found at i:5324 original size:20 final size:20
Alignment explanation
Indices: 5274--5325 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
5264 TGAATTGGTA
*
5274 GTATCGATACAAAGAGTATG
1 GTATCGATACCAAGAGTATG
*
5294 GTACCGATACCAAGAGTATG
1 GTATCGATACCAAGAGTATG
5314 GTATCGATACCA
1 GTATCGATACCA
5326 TTTCCATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (20 bp):
GTATCGATACCAAGAGTATG
Found at i:20441 original size:30 final size:30
Alignment explanation
Indices: 20407--20546 Score: 190
Period size: 30 Copynumber: 4.7 Consensus size: 30
20397 GTAAATAATA
* * * *
20407 TTATCGTTTGTTACAAAATGGTCATTAACG
1 TTATCGTTTGTTACAAAATAGCCACTAAAG
* * *
20437 TTATCATTTTTTACAAAATGGCCACTAAAG
1 TTATCGTTTGTTACAAAATAGCCACTAAAG
* * *
20467 TTATTGTTTGTTATAAAATAGCCACTAACG
1 TTATCGTTTGTTACAAAATAGCCACTAAAG
20497 TTATCGTTTGTTACAAAATAGCCACTAAAG
1 TTATCGTTTGTTACAAAATAGCCACTAAAG
20527 TTATCGTTTGTTACAAAATA
1 TTATCGTTTGTTACAAAATA
20547 TCAATCGACG
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 96 1.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (30 bp):
TTATCGTTTGTTACAAAATAGCCACTAAAG
Found at i:21420 original size:3 final size:3
Alignment explanation
Indices: 21412--21446 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
21402 AGCAAACACT
21412 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
21447 GTCAAACGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:23468 original size:24 final size:24
Alignment explanation
Indices: 23423--23490 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
23413 TAAACGAACG
* **
23423 ATAAACAAATATGTACATGAACAT
1 ATAAACAAATATGTTCGCGAACAT
*
23447 ATAAACGAATATGTTCGCGAACAT
1 ATAAACAAATATGTTCGCGAACAT
23471 -TAAACCAAA-ATGTTCGCGAA
1 ATAAA-CAAATATGTTCGCGAA
23491 TAAACGAACA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
23 15 0.39
24 23 0.61
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (24 bp):
ATAAACAAATATGTTCGCGAACAT
Found at i:23483 original size:23 final size:24
Alignment explanation
Indices: 23441--23490 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
23431 ATATGTACAT
* *
23441 GAACATATAAACGAATATGTTCGC
1 GAACATATAAACCAAAATGTTCGC
23465 GAACAT-TAAACCAAAATGTTCGC
1 GAACATATAAACCAAAATGTTCGC
23488 GAA
1 GAA
23491 TAAACGAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (24 bp):
GAACATATAAACCAAAATGTTCGC
Found at i:24405 original size:25 final size:25
Alignment explanation
Indices: 24377--24452 Score: 68
Period size: 25 Copynumber: 3.0 Consensus size: 25
24367 TTCATCGACT
24377 ATTAAAAATATGAAATTATCTATTG
1 ATTAAAAATATGAAATTATCTATTG
* * *
24402 ATTATAAGATAT-TAATTCGT-TGATT-
1 ATTA-AAAATATGAAATT-ATCT-ATTG
24427 ATTAAAAATTATGAAATTATCTATTG
1 ATTAAAAA-TATGAAATTATCTATTG
24453 TTTATAAGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 13
0.67 0.11 0.23
Matches are distributed among these distances:
24 3 0.08
25 20 0.53
26 15 0.39
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (25 bp):
ATTAAAAATATGAAATTATCTATTG
Found at i:24450 original size:51 final size:50
Alignment explanation
Indices: 24373--24485 Score: 181
Period size: 51 Copynumber: 2.2 Consensus size: 50
24363 TGAATTCATC
24373 GACTATTAAAAATATGAAATTATCTATTGATTATAAGATATTAATTCGTT
1 GACTATTAAAAATATGAAATTATCTATTGATTATAAGATATTAATTCGTT
* * * *
24423 GATTATTAAAAATTATGAAATTATCTATTGTTTATAAGGTATTAATTTGTT
1 GACTATTAAAAA-TATGAAATTATCTATTGATTATAAGATATTAATTCGTT
24474 GACTATTAAAAA
1 GACTATTAAAAA
24486 CTAGATTTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 11 0.19
51 46 0.81
ACGTcount: A:0.42, C:0.04, G:0.11, T:0.43
Consensus pattern (50 bp):
GACTATTAAAAATATGAAATTATCTATTGATTATAAGATATTAATTCGTT
Found at i:31022 original size:100 final size:99
Alignment explanation
Indices: 30844--31108 Score: 338
Period size: 100 Copynumber: 2.7 Consensus size: 99
30834 TTATAATATT
* * * *
30844 ATATATATACAATAAAGCTTTAGTTGTCCCTTTAAAGCAATTGGTTAAACGCTCC-ATCTTTATG
1 ATATATATACAATAAAGCTTAAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGA-CTTTATG
* *
30908 GATAAGATTCAGCTAAGCTTGATAAAGGTGATTATA
65 GATAAGATTCAGCT-AGCCTAATAAAGGTGATTATA
* * * *
30944 ATATCTATACAATAAAGCTTGAGTTGTCCCTCTAGAGAAATTGGTTAAACTCCCCGACTTTATGG
1 ATATATATACAATAAAGCTTAAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTATGG
*
31009 ATAATATTCAGCTAGCCTAATAAAGGTGATTATA
66 ATAAGATTCAGCTAGCCTAATAAAGGTGATTATA
* * * * *
31043 ATATTTATACAATGATA--TTAAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATG
1 ATATATATACAAT-AAAGCTTAAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTATG
31106 GAT
65 GAT
31109 TCAGCTAGCC
Statistics
Matches: 145, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
98 43 0.30
99 31 0.21
100 70 0.48
101 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (99 bp):
ATATATATACAATAAAGCTTAAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTATGG
ATAAGATTCAGCTAGCCTAATAAAGGTGATTATA
Found at i:31439 original size:11 final size:11
Alignment explanation
Indices: 31425--31450 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
31415 AACCGTAGGT
31425 CAACCTAAAGC
1 CAACCTAAAGC
31436 CAACCTAAAGC
1 CAACCTAAAGC
31447 CAAC
1 CAAC
31451 TTATCCACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.38, G:0.08, T:0.08
Consensus pattern (11 bp):
CAACCTAAAGC
Found at i:32931 original size:124 final size:123
Alignment explanation
Indices: 32533--32946 Score: 465
Period size: 124 Copynumber: 3.3 Consensus size: 123
32523 TTCAGAGCCA
* * *
32533 ATTTTAACTTCACGACGAATGATATTG-GACTCA-AAGCAACATTCATCTTTAGATTGGATTTCA
1 ATTTCAACTTCACGACGAAGGA-ATTGTG-CTCACTAGCAACATTCATCTTTAGATTGGATTTCA
** * ** *
32596 ACTTCATTACGAATAATATCCAATTCAATGCTCAACTTCACAAAG-AAGGAGCCATCCACG
64 ACTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAAAGAAAGG-GCCATCCACG
* * * * * *
32656 GTTTTAACTTCACAACGAAGGGAATCGTGCTCACTAGTAAAATTCATCTTTAGATTGGATTTCAA
1 ATTTCAACTTCACGACGAA-GGAATTGTGCTCACTAGCAACATTCATCTTTAGATTGGATTTCAA
* * * *
32721 CTTCACGATGAAGGATATTCAATTCAGGGCTCAACTTCACAACGAAGGGGCCATCCACG
65 CTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAAAGAAAGGGCCATCCACG
* * * * * * *
32780 GTTTCAGCTTCACGATGAGGGGAATTGTGCCCACTAGCAACATTCATCTTCAGATTAGATTTCAA
1 ATTTCAACTTCACGACGA-AGGAATTGTGCTCACTAGCAACATTCATCTTTAGATTGGATTTCAA
* * *
32845 CTTCACGATGAAGGATATCCAATTCAAGGTTCAACTTCACAATGAAAGGGCCCTCCACG
65 CTTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAAAGAAAGGGCCATCCACG
* * *
32904 ATTTCAACTTCACGACGAAGGATATTGTGTTCATTTGCAACAT
1 ATTTCAACTTCACGACGAAGGA-ATTGTGCTCACTAGCAACAT
32947 AGCTCAAGGC
Statistics
Matches: 243, Mismatches: 42, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
123 27 0.11
124 213 0.88
125 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (123 bp):
ATTTCAACTTCACGACGAAGGAATTGTGCTCACTAGCAACATTCATCTTTAGATTGGATTTCAAC
TTCACGATGAAGGATATCCAATTCAAGGCTCAACTTCACAAAGAAAGGGCCATCCACG
Found at i:33075 original size:84 final size:84
Alignment explanation
Indices: 32934--33367 Score: 522
Period size: 84 Copynumber: 5.2 Consensus size: 84
32924 GATATTGTGT
* * * *
32934 TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTA
* * *
32999 CGCTCAGCTCTAAGGAAAA
66 CGCTCAGCTCCAAGGCACA
* *
33018 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGGCCTTCGAGTTCGACTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTA
33083 CGCTCAGCTCCAAGGCACA
66 CGCTCAGCTCCAAGGCACA
*
33102 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTTCC-ACCAAAAGACCTTCGAGTTCGACT
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTCGACT
33166 ACGCTCAGCTCCAAGGCACA
65 ACGCTCAGCTCCAAGGCACA
* * * * *
33186 TCATTTACAGTATAGCTCAAGGCTAGAAGGGCTATCTGCCAA--AGA-ACC-TCGAGTTCGATTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTA
* * *
33247 CACTCAGCTTCGAGGGCACA
66 CGCTCAGC-TCCAAGGCACA
* * * ** * * *
33267 TCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCAA-CAAAGACATTTGAGTTCGATTA
1 TCATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTA
* *
33331 CACTCAGCT-CAGCGGCACA
66 CGCTCAGCTCCA-AGGCACA
* *
33350 TCATTTGTAGTATAGCTC
1 TCATTTGCAGCATAGCTC
33368 GATCACATTA
Statistics
Matches: 306, Mismatches: 37, Indels: 15
0.85 0.10 0.04
Matches are distributed among these distances:
80 19 0.06
81 48 0.16
82 5 0.02
83 25 0.08
84 208 0.68
85 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (84 bp):
TCATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTA
CGCTCAGCTCCAAGGCACA
Found at i:33761 original size:36 final size:36
Alignment explanation
Indices: 33716--33977 Score: 183
Period size: 37 Copynumber: 7.1 Consensus size: 36
33706 TTAAAACGGT
* * *
33716 TTTCTAAAATATGTATAATATATAGTTTCGAAAACA
1 TTTCAAAAATATATATAATATATAGTTTTGAAAACA
* **
33752 TTTCAAAAATATATATATTATATAGTTTTGAAATATT
1 TTTCAAAAATATATATAATATATAGTTTTGAAA-ACA
* *
33789 TTTGAAAACAT-T-TATAATGTATAGTTTTTGAAAATTC-
1 TTTCAAAA-ATATATATAATATATAG-TTTTGAAAA--CA
** **
33826 TTTTGAAAATATATATAATATATAGTTTTGAAATTA
1 TTTCAAAAATATATATAATATATAGTTTTGAAAACA
* * *
33862 TTTTGAAATTATATATATAATATATAGTTTTTAAAACA
1 -TTTCAAA-AATATATATAATATATAGTTTTGAAAACA
* * * *
33900 TTTTTTGAAAACT-TATATAGTATATAGTTTTAAAAACA
1 ---TTTCAAAAATATATATAATATATAGTTTTGAAAACA
* * *
33938 TTTTTGAAAAAT-TATATAATATATAGTTTTAAAAATA
1 --TTTCAAAAATATATATAATATATAGTTTTGAAAACA
33975 TTT
1 TTT
33978 TTTGAAAACT
Statistics
Matches: 186, Mismatches: 28, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
35 3 0.02
36 42 0.23
37 71 0.38
38 61 0.33
39 1 0.01
40 8 0.04
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.46
Consensus pattern (36 bp):
TTTCAAAAATATATATAATATATAGTTTTGAAAACA
Found at i:33991 original size:38 final size:37
Alignment explanation
Indices: 33757--34102 Score: 262
Period size: 38 Copynumber: 9.6 Consensus size: 37
33747 AAACATTTCA
* *
33757 AAAATATATATATTATATAGTTTT-GAAATA-TTTTTG
1 AAAAT-TATATAATATATAGTTTTAAAAATATTTTTTG
* * *
33793 AAAACATT-TATAATGTATAGTTTTTGAAAAT-TCTTTTG
1 -AAA-ATTATATAATATATAG-TTTTAAAAATATTTTTTG
* *
33831 AAAATATATATAATATATAGTTTT-GAAAT-TATTTTG
1 AAAAT-TATATAATATATAGTTTTAAAAATATTTTTTG
* *
33867 AAATTATATATATAATATATAGTTTTTAAAACATTTTTTG
1 AAA--AT-TATATAATATATAGTTTTAAAAATATTTTTTG
* *
33907 AAAACTTATATAGTATATAGTTTTAAAAACA-TTTTTG
1 AAAA-TTATATAATATATAGTTTTAAAAATATTTTTTG
33944 AAAAATTATATAATATATAGTTTTAAAAATATTTTTTG
1 -AAAATTATATAATATATAGTTTTAAAAATATTTTTTG
* * * *
33982 AAAACT-TAT-ATA-AT-GTTTTTAAATTA-ATTTTG
1 AAAATTATATAATATATAGTTTTAAAAATATTTTTTG
* * * **
34014 AAAAATATATAATAAATAGTTTTGAAAACGTTTTTT-
1 AAAATTATATAATATATAGTTTTAAAAATATTTTTTG
**
34050 TTAA--ATATAATATATAG-TTTAAAAATA-TTTTTG
1 AAAATTATATAATATATAGTTTTAAAAATATTTTTTG
*
34083 -AAA-TATATATTATATAGTTT
1 AAAATTATATAATATATAGTTT
34103 ATATTATATT
Statistics
Matches: 256, Mismatches: 32, Indels: 45
0.77 0.10 0.14
Matches are distributed among these distances:
32 17 0.07
33 32 0.12
34 19 0.07
35 5 0.02
36 38 0.15
37 55 0.21
38 77 0.30
39 4 0.02
40 9 0.04
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.47
Consensus pattern (37 bp):
AAAATTATATAATATATAGTTTTAAAAATATTTTTTG
Found at i:34067 original size:34 final size:32
Alignment explanation
Indices: 33876--34102 Score: 138
Period size: 37 Copynumber: 6.5 Consensus size: 32
33866 GAAATTATAT
33876 ATATAATATATAGTTTTTAAAACAT-TTTTTGAAA
1 ATATAATATATAG-TTTTAAAA-ATATTTTTG-AA
*
33910 ACTTATATAGTATATAGTTTTAAAAACATTTTTGAAAAA
1 A--TATA-A-TATATAGTTTTAAAAATATTTTTG---AA
33949 TTATATAATATATAGTTTTAAAAATATTTTTTGAA
1 --ATATAATATATAGTTTTAAAAATA-TTTTTGAA
* * * *
33984 A-ACTTATATA-ATGTTTTTAAATTAATTTTGAAAAA
1 ATA-TAATATATA-GTTTTAAAAATATTTTTG---AA
* * * *
34019 TATATAATAAATAGTTTTGAAAACGTTTTTTTTAA
1 -ATATAATATATAGTTTT-AAAA-ATATTTTTGAA
34054 ATATAATATATAG-TTTAAAAATATTTTTGAA
1 ATATAATATATAGTTTTAAAAATATTTTTGAA
34085 ATATATATTATATAGTTT
1 ATATA-A-TATATAGTTT
34103 ATATTATATT
Statistics
Matches: 153, Mismatches: 17, Indels: 46
0.71 0.08 0.21
Matches are distributed among these distances:
31 13 0.08
32 12 0.08
33 27 0.18
34 15 0.10
35 6 0.04
36 16 0.10
37 37 0.24
38 19 0.12
39 7 0.05
41 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (32 bp):
ATATAATATATAGTTTTAAAAATATTTTTGAA
Found at i:34082 original size:69 final size:69
Alignment explanation
Indices: 33764--34102 Score: 266
Period size: 74 Copynumber: 4.8 Consensus size: 69
33754 TCAAAAATAT
* * * * *
33764 ATATATTATATAGTTTT-GAAATATTTTTGAAAACATTTATAATGTATAGTTTTTGAAA-ATTCT
1 ATATAATATATAGTTTTAAAAATATTTTTGAAAA-ATATATAATATATAG-TTTTAAAACATT-T
*
33827 TTTGAAAATA
63 TTT--TAA-A
* *
33837 TATATAATATATAGTTTTGAAATTA-TTTTGAAATTATATATATAATATATAGTTTTTAAAACAT
1 -ATATAATATATAGTTTTAAAAATATTTTTGAAA--A-ATATATAATATATAG-TTTTAAAACAT
*
33901 TTTTTGAAA
61 TTTTTTAAA
*
33910 ACTTATATAGTATATAGTTTTAAAAACATTTTTGAAAAATTATATAATATATAGTTTTAAAA-AT
1 A--TATA-A-TATATAGTTTTAAAAATATTTTTGAAAAA-TATATAATATATAGTTTTAAAACAT
33974 ATTTTTTGAAA
61 -TTTTTT-AAA
* * * * *
33985 ACT-T-ATATA-ATGTTTTTAAATTAATTTTGAAAAATATATAATAAATAGTTTTGAAAACGTTT
1 A-TATAATATATA-GTTTTAAAAATATTTTTGAAAAATATATAATATATAGTTTT-AAAACATTT
*
34047 TTTTTAA
63 TTTTAAA
*
34054 ATATAATATATAG-TTTAAAAATATTTTTG--AAATATATATTATATAGTTT
1 ATATAATATATAGTTTTAAAAATATTTTTGAAAAATATATAATATATAGTTT
34103 ATATTATATT
Statistics
Matches: 222, Mismatches: 25, Indels: 43
0.77 0.09 0.15
Matches are distributed among these distances:
67 18 0.08
68 1 0.00
69 35 0.16
70 39 0.18
71 3 0.01
72 1 0.00
73 4 0.02
74 45 0.20
75 24 0.11
76 41 0.18
77 11 0.05
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (69 bp):
ATATAATATATAGTTTTAAAAATATTTTTGAAAAATATATAATATATAGTTTTAAAACATTTTTT
TAAA
Found at i:34131 original size:22 final size:20
Alignment explanation
Indices: 34085--34137 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 20
34075 TATTTTTGAA
34085 ATATATATTATATAGTTTATATT
1 ATAT-TATTAT-TA-TTTATATT
34108 ATATTATTATTATTTATGATT
1 ATATTATTATTATTTAT-ATT
34129 -TATT-TTATT
1 ATATTATTATT
34138 TTTCTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.17
20 9 0.31
21 5 0.17
22 6 0.21
23 4 0.14
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
ATATTATTATTATTTATATT
Found at i:34145 original size:22 final size:22
Alignment explanation
Indices: 34106--34154 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
34096 ATAGTTTATA
*
34106 TTATATTATTATTATTTA-TGAT
1 TTATTTTATTATTATTTATTG-T
* *
34128 TTATTTTATTTTTCTTTATTGT
1 TTATTTTATTATTATTTATTGT
34150 TTATT
1 TTATT
34155 AATTTCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.71
Consensus pattern (22 bp):
TTATTTTATTATTATTTATTGT
Found at i:34762 original size:19 final size:19
Alignment explanation
Indices: 34735--34771 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
34725 TCAACCAAAG
*
34735 AAAGGCACCGAGAAAGGGA
1 AAAGGCACCGAAAAAGGGA
*
34754 AAAGTCACCGAAAAAGGG
1 AAAGGCACCGAAAAAGGG
34772 TAAGACCCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.16, G:0.32, T:0.03
Consensus pattern (19 bp):
AAAGGCACCGAAAAAGGGA
Found at i:35429 original size:5 final size:5
Alignment explanation
Indices: 35419--35552 Score: 57
Period size: 5 Copynumber: 26.8 Consensus size: 5
35409 ATTTTCTTTG
* * *
35419 TTTTA TTTTA -TTTA TTCTTT TTTTA -TTTA TTTTA --TTA TTTTC TTTGA
1 TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
* * * * *
35466 TTTTT TCTTTC TTTTA TTTT- TCTTA TTTTTCA ATTTA TTTAA TTTTTA
1 TTTTA T-TTTA TTTTA TTTTA TTTTA -TTTT-A TTTTA TTTTA -TTTTA
* * *
35514 CTTTTA -TTTA -TTTA ATTTA ATTTA TTTAA TTTTTA TTTT
1 -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTT
35553 TTTCATAACT
Statistics
Matches: 98, Mismatches: 19, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
3 3 0.03
4 19 0.19
5 48 0.49
6 27 0.28
7 1 0.01
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:35432 original size:9 final size:9
Alignment explanation
Indices: 35420--35555 Score: 61
Period size: 9 Copynumber: 14.9 Consensus size: 9
35410 TTTTCTTTGT
35420 TTTATTTTA
1 TTTATTTTA
*
35429 TTTA--TTC
1 TTTATTTTA
35436 TTT-TTTTA
1 TTTATTTTA
35444 TTTATTTTA
1 TTTATTTTA
*
35453 -TTATTTTC
1 TTTATTTTA
*
35461 TTTGATTTTTTC
1 TTT-A--TTTTA
*
35473 TTTCTTTTA
1 TTTATTTTA
35482 TTT-TTCTTA
1 TTTATT-TTA
**
35491 TTT-TTCAA
1 TTTATTTTA
*
35499 TTTATTTAATT
1 TTTATTT--TA
35510 TTTACTTTTA
1 TTTA-TTTTA
*
35520 TTTATTTAA
1 TTTATTTTA
*
35529 TTTAATTTA
1 TTTATTTTA
35538 TTTAATTTTTA
1 TTT-A-TTTTA
35549 TTT-TTTT
1 TTTATTTT
35556 CATAACTTAT
Statistics
Matches: 98, Mismatches: 15, Indels: 29
0.69 0.11 0.20
Matches are distributed among these distances:
7 5 0.05
8 22 0.22
9 42 0.43
10 7 0.07
11 11 0.11
12 11 0.11
ACGTcount: A:0.19, C:0.05, G:0.01, T:0.75
Consensus pattern (9 bp):
TTTATTTTA
Found at i:35495 original size:15 final size:15
Alignment explanation
Indices: 35410--35489 Score: 51
Period size: 15 Copynumber: 5.5 Consensus size: 15
35400 TCTTTTTCGA
*
35410 TTTTCTTTGTTTTA-
1 TTTTCTTTCTTTTAT
* *
35424 TTTTATTTATTCTT-T
1 TTTTCTTTCTT-TTAT
* *
35439 TTTTATTTATTTTA-
1 TTTTCTTTCTTTTAT
* *
35453 TTAT-TTTCTTTGATT
1 TTTTCTTTCTTTTA-T
35468 TTTTCTTTCTTTTAT
1 TTTTCTTTCTTTTAT
35483 TTTTCTT
1 TTTTCTT
35490 ATTTTTCAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
13 7 0.13
14 14 0.26
15 24 0.45
16 8 0.15
ACGTcount: A:0.11, C:0.07, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTCTTTCTTTTAT
Found at i:35536 original size:14 final size:14
Alignment explanation
Indices: 35498--35545 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
35488 TTATTTTTCA
35498 ATTT-ATTTAA-TT
1 ATTTAATTTAATTT
* *
35510 -TTTACTTTTATTT
1 ATTTAATTTAATTT
35523 ATTTAATTTAATTT
1 ATTTAATTTAATTT
35537 ATTTAATTT
1 ATTTAATTT
35546 TTATTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 3 0.10
12 4 0.14
13 2 0.07
14 20 0.69
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTAATTTAATTT
Found at i:36166 original size:19 final size:17
Alignment explanation
Indices: 36142--36188 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
36132 ACCTAATTTT
36142 GGTATCGATACCATAAAGG
1 GGTATCGATACCAT--AGG
*
36161 GGTATC-AGTACCATAGT
1 GGTATCGA-TACCATAGG
36178 GGTATCGATAC
1 GGTATCGATAC
36189 TGGGCTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 11 0.44
18 2 0.08
19 12 0.48
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (17 bp):
GGTATCGATACCATAGG
Found at i:36203 original size:16 final size:16
Alignment explanation
Indices: 36182--36217 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
36172 CATAGTGGTA
*
36182 TCGATACTGGGCTAAT
1 TCGATACTGGGATAAT
36198 TCGATACTGGGATAAT
1 TCGATACTGGGATAAT
36214 TCGA
1 TCGA
36218 ATCTAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (16 bp):
TCGATACTGGGATAAT
Found at i:36276 original size:22 final size:22
Alignment explanation
Indices: 36248--36310 Score: 117
Period size: 22 Copynumber: 2.9 Consensus size: 22
36238 CTAGAAGTGG
36248 GTATCGATACCATAGTAGGGTA
1 GTATCGATACCATAGTAGGGTA
36270 GTATCGATACCATAGTAGGGTA
1 GTATCGATACCATAGTAGGGTA
*
36292 GTATCGATACCATGGTAGG
1 GTATCGATACCATAGTAGG
36311 AGTATCAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (22 bp):
GTATCGATACCATAGTAGGGTA
Found at i:36721 original size:59 final size:58
Alignment explanation
Indices: 36654--37052 Score: 582
Period size: 59 Copynumber: 6.8 Consensus size: 58
36644 CACTAAGTGA
*
36654 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGAGAACTTCGTGT
1 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGAACTT-GTGT
*
36713 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTTGTGT
1 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGAAC-TTGTGT
* *
36772 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGAGCTTATTGT
1 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGAACTT-GTGT
* * * *
36831 GCTAAAATGATAAGAAAATCATACTAAGTGTATGAATTTCTGTATAGGGAGCTTATTGT
1 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGAACTT-GTGT
* * * * *
36890 GCTAAAATGATAAGAAATTCATACTAAGTGTTTGAATTTCCATATTGGGCACCTTGTTT
1 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGG-AACTTGTGT
* * *
36949 GCTAAAATGATAAGAAATTCATACTAAGTGTATGGATTTCCGTATTGGGCACCTTGTGT
1 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGG-AACTTGTGT
* *
37008 GCTAAAATGATAAGAAATTAATACTAAGTATATGAATTTCCGTAT
1 GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTAT
37053 GAGAAATAAT
Statistics
Matches: 315, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
58 2 0.01
59 307 0.97
60 6 0.02
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (58 bp):
GCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGAACTTGTGT
Found at i:43175 original size:20 final size:22
Alignment explanation
Indices: 43129--43180 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
43119 CCGGAAGGGG
43129 GTATCGATACCATAGTAGGGTA
1 GTATCGATACCATAGTAGGGTA
*
43151 GTATCGATACCATGGT-GGG-A
1 GTATCGATACCATAGTAGGGTA
43171 GTATCGATAC
1 GTATCGATAC
43181 TGAGGAACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 11 0.38
21 3 0.10
22 15 0.52
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (22 bp):
GTATCGATACCATAGTAGGGTA
Found at i:43182 original size:95 final size:95
Alignment explanation
Indices: 42956--43182 Score: 287
Period size: 95 Copynumber: 2.4 Consensus size: 95
42946 GGTACCAATG
* * *
42956 GGGTAGTATCGATACCATAGTAAGGGTATCGATACTAGATAACATCGAACTTAATTTTGGTATCA
1 GGGTAGTATCGATACCATGGTAAGGGTATCGATACTGGACAACATCGAACTTAATTTTGGTATCA
* *
43021 ATACCATAAAGGGGTATCGGTACCATAGTA
66 ATACCAGAAAGGGGTATCGATACCATAGTA
** * * * *
43051 TAGTAGTATCGATACCATGGTAAGGTTATCGATACTGGGCCACATTGAA-TCTAATTTTGGTATC
1 GGGTAGTATCGATACCATGGTAAGGGTATCGATACTGGACAACATCGAACT-TAATTTTGGTATC
* * *
43115 TATACCGGAAGGGGGTATCGATACCATAGTA
65 AATACCAGAAAGGGGTATCGATACCATAGTA
*
43146 GGGTAGTATCGATACCATGGT-GGGAGTATCGATACTG
1 GGGTAGTATCGATACCATGGTAAGG-GTATCGATACTG
43183 AGGAACCATA
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
94 3 0.03
95 109 0.97
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (95 bp):
GGGTAGTATCGATACCATGGTAAGGGTATCGATACTGGACAACATCGAACTTAATTTTGGTATCA
ATACCAGAAAGGGGTATCGATACCATAGTA
Found at i:43586 original size:59 final size:59
Alignment explanation
Indices: 43514--44024 Score: 697
Period size: 59 Copynumber: 8.8 Consensus size: 59
43504 ATGGCAGTAA
43514 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
1 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
* * *
43573 TTGTGCTAAAATGATAAAAAATCCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
1 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
* *
43632 GTGTGCTAAATTGATAAGAAATTCATACTAAGTGTATGAATCTCCGTATAGGGCACTTC
1 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
*
43691 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCGCTTC
1 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
* * *
43750 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTTCGTATAGGGCGCTTA
1 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
* * *
43809 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATAAATTTTCGTATAGGGCGCTTC
1 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
* ** **
43868 GTGTGCTAAAATTATAAG------A-A-T-A--GTATGAATTTATGTATTTGGCACCTT-
1 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCA-CTTC
* * * *
43916 GTGTGCTAAAATGATAAAAAAATTCATACTAAATGTATGAATTTCCTTATTGGGCACCTT-
1 GTGTGCTAAAATGAT-AAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCA-CTTC
* *
43976 GTGTGCTAAAATGATAAGAAATTCATACTAAATGTATGAATTTTCGTAT
1 GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTAT
44025 GGGAAATAAT
Statistics
Matches: 408, Mismatches: 31, Indels: 26
0.88 0.07 0.06
Matches are distributed among these distances:
48 30 0.07
49 5 0.01
50 1 0.00
51 1 0.00
52 1 0.00
53 1 0.00
55 1 0.00
56 1 0.00
57 1 0.00
58 1 0.00
59 328 0.80
60 37 0.09
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (59 bp):
GTGTGCTAAAATGATAAGAAATTCATACTAAGTGTATGAATTTCCGTATAGGGCACTTC
Found at i:43954 original size:60 final size:59
Alignment explanation
Indices: 43890--44018 Score: 206
Period size: 60 Copynumber: 2.2 Consensus size: 59
43880 TATAAGAATA
*
43890 GTATGAATTT-ATGTATTTGGCACCTTGTGTGCTAAAATGATAAAAAAATTCATACTAAAT
1 GTATGAATTTCAT-TATTGGGCACCTTGTGTGCTAAAATGAT-AAAAAATTCATACTAAAT
* *
43950 GTATGAATTTCCTTATTGGGCACCTTGTGTGCTAAAATGATAAGAAATTCATACTAAAT
1 GTATGAATTTCATTATTGGGCACCTTGTGTGCTAAAATGATAAAAAATTCATACTAAAT
44009 GTATGAATTT
1 GTATGAATTT
44019 TCGTATGGGA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
59 27 0.42
60 37 0.57
61 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (59 bp):
GTATGAATTTCATTATTGGGCACCTTGTGTGCTAAAATGATAAAAAATTCATACTAAAT
Found at i:50882 original size:29 final size:29
Alignment explanation
Indices: 50840--50899 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
50830 ATTTTCACCT
50840 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
50869 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
50898 AA
1 AA
50900 TAATTTAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.23
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:55568 original size:29 final size:29
Alignment explanation
Indices: 55526--55584 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
55516 ATTTTCACCT
55526 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
55555 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
55584 A
1 A
55585 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:62898 original size:60 final size:60
Alignment explanation
Indices: 62805--62925 Score: 197
Period size: 60 Copynumber: 2.0 Consensus size: 60
62795 ATAAAAGAAA
* * *
62805 CCTTAAAGAATCCTAATTGTTGTCGTTGCCGTCATCTTCCCCTATTCATTTCCCTTTGTT
1 CCTTAAAGAATCCTAATTGTTGCCGTTACCGTCATCTTCCCCTATTCATTCCCCTTTGTT
* *
62865 CCTTAAAGAATCCTAGTTGTTGCCGTTATCGTCATCTTCCCCTATTCATTCCCCTTTGTT
1 CCTTAAAGAATCCTAATTGTTGCCGTTACCGTCATCTTCCCCTATTCATTCCCCTTTGTT
62925 C
1 C
62926 TTCATCGAGT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.17, C:0.30, G:0.12, T:0.42
Consensus pattern (60 bp):
CCTTAAAGAATCCTAATTGTTGCCGTTACCGTCATCTTCCCCTATTCATTCCCCTTTGTT
Found at i:66115 original size:15 final size:15
Alignment explanation
Indices: 66095--66173 Score: 77
Period size: 15 Copynumber: 5.1 Consensus size: 15
66085 CTCCTCGTAA
66095 CTATGGTGGTGGCGG
1 CTATGGTGGTGGCGG
*
66110 CTATGGTGGTGGTGG
1 CTATGGTGGTGGCGG
*** *
66125 CGGCGGCTATGGTGGTGG
1 CTATGG---TGGTGGCGG
*
66143 CTATGGAGGTGGCGG
1 CTATGGTGGTGGCGG
66158 CTATGGTGGTGGCGG
1 CTATGGTGGTGGCGG
66173 C
1 C
66174 GGCGGCTATG
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
15 39 0.76
18 12 0.24
ACGTcount: A:0.08, C:0.14, G:0.53, T:0.25
Consensus pattern (15 bp):
CTATGGTGGTGGCGG
Found at i:66124 original size:21 final size:21
Alignment explanation
Indices: 66098--66191 Score: 107
Period size: 21 Copynumber: 4.2 Consensus size: 21
66088 CTCGTAACTA
*
66098 TGGTGGTGGCGGCTATGGTGG
1 TGGTGGCGGCGGCTATGGTGG
66119 TGGTGGCGGCGGCTATGGTGG
1 TGGTGGCGGCGGCTATGGTGG
*
66140 TGGCTATGGAGGTGGCGGCTATGGTGG
1 TGG---T---GGCGGCGGCTATGGTGG
*
66167 TGGCGGCGGCGGCTATGGTGG
1 TGGTGGCGGCGGCTATGGTGG
66188 TGGT
1 TGGT
66192 AATTATGGCG
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
21 42 0.68
24 1 0.02
27 19 0.31
ACGTcount: A:0.06, C:0.13, G:0.55, T:0.26
Consensus pattern (21 bp):
TGGTGGCGGCGGCTATGGTGG
Found at i:66166 original size:48 final size:48
Alignment explanation
Indices: 66095--66190 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
66085 CTCCTCGTAA
* *
66095 CTATGGTGGTGGCGGCTATGGTGGTGGTGGCGGCGGCTATGGTGGTGG
1 CTATGGAGGTGGCGGCTATGGTGGTGGCGGCGGCGGCTATGGTGGTGG
66143 CTATGGAGGTGGCGGCTATGGTGGTGGCGGCGGCGGCTATGGTGGTGG
1 CTATGGAGGTGGCGGCTATGGTGGTGGCGGCGGCGGCTATGGTGGTGG
66191 TAATTATGGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.07, C:0.14, G:0.54, T:0.25
Consensus pattern (48 bp):
CTATGGAGGTGGCGGCTATGGTGGTGGCGGCGGCGGCTATGGTGGTGG
Done.