Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009062.1 Hibiscus syriacus cultivar Beakdansim tig00112485_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60485

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6228--6467
41
6.0
41
74
15
198
28
14
23
32
1.94
6276--6482
40
5.2
40
75
13
221
28
13
23
34
1.93
6234--6498
81
3.3
82
85
8
350
29
15
23
31
1.95
6271--6540
81
3.4
81
87
7
356
28
15
23
32
1.95
6390--6539
41
3.7
41
73
10
137
27
16
24
31
1.97
15547--15632
21
4.1
21
77
3
75
37
16
41
4
1.69
15592--15647
21
2.7
21
85
0
76
41
16
41
1
1.58
15983--16123
43
3.2
46
82
8
136
26
21
23
27
1.99
16022--16292
86
3.1
83
74
8
213
28
22
20
28
1.99
16070--16292
43
5.2
43
80
3
209
28
22
21
27
1.99
18025--18145
65
1.9
65
83
8
158
37
4
6
52
1.47
18025--18145
33
3.7
33
73
9
88
37
4
6
52
1.47
18371--18402
13
2.3
15
89
10
50
40
3
18
37
1.67
21092--21134
16
2.7
16
100
0
86
11
46
6
34
1.67
21625--21664
21
1.9
21
89
0
62
15
20
7
57
1.61
28814--28858
2
22.5
2
100
0
90
48
0
0
51
1.00
28932--29013
3
28.0
3
81
4
96
32
3
0
63
1.12
28932--29014
20
3.9
20
77
10
67
33
3
0
62
1.12
31123--31157
18
1.9
18
88
11
54
31
0
2
65
1.07
41668--41706
18
2.1
19
95
4
71
92
0
7
0
0.39
41668--41736
9
7.7
9
73
15
54
84
0
13
2
0.74
41671--41736
22
3.0
22
84
4
80
84
0
12
3
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41671--41707
1
37.0
1
88
0
56
94
0
5
0
0.30
42671--43119
52
8.8
52
95
2
759
24
14
23
37
1.92
43751--44200
119
3.8
118
94
2
768
38
13
20
27
1.90
44442--44507
3
22.7
3
75
6
64
34
4
0
60
1.17
46990--47028
16
2.3
18
91
8
64
48
0
0
51
1.00
47000--47036
16
2.2
16
90
4
56
43
0
2
54
1.14
47047--47331
140
2.0
141
87
6
414
48
7
7
37
1.58
47364--47440
11
6.7
11
69
21
52
62
2
3
31
1.27
47365--47426
25
2.8
24
81
15
71
62
1
3
32
1.20
47704--47770
2
34.0
2
96
3
127
49
0
0
50
1.00
48546--48610
24
2.7
24
90
0
103
12
13
53
20
1.71
49049--49169
45
2.7
45
89
0
179
33
21
19
25
1.96
49130--49685
76
7.5
74
91
3
870
35
21
17
26
1.95
49130--49685
149
3.7
148
93
3
879
35
21
17
26
1.95
49122--49685
225
2.5
222
93
2
929
35
21
17
26
1.95
56921--56960
13
3.0
14
86
13
50
65
15
5
15
1.44
59774--60040
136
2.0
133
88
7
396
45
8
6
39
1.61
60454--60485
2
16.5
2
93
6
57
50
0
0
50
1.00

Tables:   1

The End!