Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009064.1 Hibiscus syriacus cultivar Beakdansim tig00112487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 748991
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 3 of 4
Found at i:559368 original size:149 final size:150
Alignment explanation
Indices: 559171--559476 Score: 578
Period size: 149 Copynumber: 2.0 Consensus size: 150
559161 GGGTAGAGGG
559171 TCTACGCGGTCATTCGGGATATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACAC
1 TCTACGCGGTCATTCGGGA-ATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACAC
559236 ATACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTAT
65 ATACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTAT
559301 TATATGGCACTACGGTGCAAT
130 TATATGGCACTACGGTGCAAT
* *
559322 TCTACGCGGTCCTTCGGG-GTATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
1 TCTACGCGGTCATTCGGGAATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
559386 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATT
559451 ATATGGCACTACGGTGCAAT
131 ATATGGCACTACGGTGCAAT
559471 TCTACG
1 TCTACG
559477 TGGCACTTCG
Statistics
Matches: 153, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
149 136 0.89
151 17 0.11
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (150 bp):
TCTACGCGGTCATTCGGGAATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACA
TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATT
ATATGGCACTACGGTGCAAT
Found at i:559488 original size:23 final size:23
Alignment explanation
Indices: 559454--559499 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
559444 CATTATTATA
*
559454 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTATACG
*
559477 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTATACG
559500 AGCTGTGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTATACG
Found at i:568160 original size:807 final size:808
Alignment explanation
Indices: 562461--570469 Score: 15597
Period size: 808 Copynumber: 9.9 Consensus size: 808
562451 CTTCCGATCG
* *
562461 AATTCGAACCTTTTTCCGGTAAGATTATTTCCCTCTTCTCTCAATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
* *
562526 TTTCCTTTTATTTCTCTGTTTTTGGTATTAACTTCTTGATCATTTCT-AAAAAACCCCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
562590 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
*
562655 CTCATTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
*
562720 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCAGAAGAGGAGAGCTTGGCGGCGAAAATTT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
*
562785 AGTGTCTACAGTATGTTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
562850 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
*
562915 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAACTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
562980 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
563045 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
563110 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
563175 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
563240 TACAGAGGATTTGTTTGTGGCATCCATT
781 TACAGAGGATTTGTTTGTGGCATCCATT
563268 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
563333 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAAACCCCTCATGA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCT-AAAAAAACCCCTCATGA
563398 ATTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTA
130 ATTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTA
563463 ACTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTG
195 ACTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTG
* *
563528 CCGTTGTAGACCATTGGTGCATGCGTGGAGGGTCTTCAGAAGAGGAGAGCTTGGCGGCGAAAATT
260 CCGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATT
*
563593 TAGTGTCTACAGTATGTTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATAT
325 TAGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATAT
563658 TTTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTT
390 TTTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTT
563723 AAAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGT
455 AAAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGT
563788 TGTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAA
520 TGTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAA
*
563853 TTTGATACACAGAGTGAAGTTCGAAAAAAGACATGACCACATCATTATGTTTTTAATGATTTAAT
585 TTTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAAT
563918 GTAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATT
650 GTAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATT
563983 TAATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTG
715 TAATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTG
*
564048 TTACAAAGGATTTGTTTGTGGCATCCATT
780 TTACAGAGGATTTGTTTGTGGCATCCATT
564077 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
564142 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
564207 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
564272 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
*
564337 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCAGAAGAGGAGAGCTTGGCGGCGAAAATTT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
*
564402 AGTGTCTACAGTATGTTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
564467 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
564532 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
564597 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
564662 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
*
564727 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTATAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
564792 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
564857 TACAGAGGATTTGTTTGTGGCATCCATT
781 TACAGAGGATTTGTTTGTGGCATCCATT
564885 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
*
564950 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTAATCCTTTCTAAAAAAACCCCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
565015 TTTATAGGCTTCAAATCCCTTCA-TTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
565079 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
565144 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAA-TT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
*
565208 AGTGTCTACAGTATGTTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATA-TT-TATATT
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
565271 TTAGAGTTCAGTTTAGTGATAAAATC-A-ACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
565334 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
565399 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTA-CCCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
*
565463 TTGATACACAGAGTGAAGTTCGAAAATAGACACGACCACATCATTATGTTTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
565528 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
565593 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
565658 TACAGAGGATTTGTTTGTGGCATCCATT
781 TACAGAGGATTTGTTTGTGGCATCCATT
565686 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
* *
565751 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTAATCCTTTCTAAAAAAAACCCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
565816 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
565881 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
565946 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
*
566011 AGTGTCTACAGTATGTTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
566076 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
*
566141 AAGGAAGTATTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
566206 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
*
566271 TTGATACACAGAGTGAAGTTCGAAAATAGACACGACCACATCATTATGTTTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
566336 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
566401 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
566466 TACAGAGGATTTGTTTGTGGCATCCATT
781 TACAGAGGATTTGTTTGTGGCATCCATT
*
566494 AATTCGAACCTTTTTCCGGTGAGAATATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
566559 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
566624 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
566689 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
566754 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
566819 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
566884 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
566949 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
567014 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
567079 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
567144 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
567209 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
567274 TACAGAGGATTTGTTTGTGGCATCCATT
781 TACAGAGGATTTGTTTGTGGCATCCATT
567302 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
567367 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCT-AAAAAACCCCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
567431 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
567496 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
567561 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
*
567626 AGTGTCTACTGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
*
567691 TTAGAGTTCAGTTTAGTGATAAAATCAACGCATAAAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
567756 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
*
567821 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCTCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
567886 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
*
567951 TAACAATATTTTAATATGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
568016 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
568081 TACAGAGGATTTGTTTGTGGCATCCATT
781 TACAGAGGATTTGTTTGTGGCATCCATT
568109 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
568174 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
*
568239 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTAGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
568304 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
568369 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
568434 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATA-TTATATATT
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
568498 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
568563 AAGGAAGTGTTGTTCT-CCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
568627 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
568692 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATG-TTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
568756 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
568821 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
568886 TACAGAGGATTTGTTTGTGGCATCCATT
781 TACAGAGGATTTGTTTGTGGCATCCATT
568914 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATA-
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
*
568978 TTTCCTTTTATTTCTCTG-TTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACACCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
569042 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
569107 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
569172 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
569237 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATA-T
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
569301 TTAGAGTTCAGTTTAGTGATAAAATCAACACAT-AAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
569365 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
569430 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
569495 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
569560 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
569625 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
569690 TACAGAGGATTTGTTTGTGGCATCCATT
781 TACAGAGGATTTGTTTGTGGCATCCATT
569718 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
1 AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
569783 TTTCCTTTTATTTCTCTG-TTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAA-CCCTCATGAA
66 TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
569846 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
131 TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
569911 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
196 CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
569976 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
261 CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
570041 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
326 AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
570106 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
391 TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
570171 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
456 AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
570236 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
521 GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
570301 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
586 TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
570366 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
651 TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
570431 AATG-AAAAAATTATACAAATTTTAAAATTAAATGATATT
716 AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATT
570470 ACAGAGGATT
Statistics
Matches: 7148, Mismatches: 38, Indels: 34
0.99 0.01 0.00
Matches are distributed among these distances:
801 393 0.05
802 360 0.05
803 547 0.08
804 564 0.08
805 393 0.05
806 513 0.07
807 1311 0.18
808 2265 0.32
809 802 0.11
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (808 bp):
AATTCGAACCTTTTTCCGGTGAGATTATTTCCCTCTTCTCTCTATTTTCTCTCGAACCCGAATAT
TTTCCTTTTATTTCTCTGTTTTTGGTATTTACTTCTTGATCCTTTCTAAAAAAACCCCTCATGAA
TTTATAGGCTTCAAATCCCTTCATTTTCGACTAGTTTTAGTTTCCCAGTTGGACTAAAAAACTAA
CTCGTTTTTTCTATTTTTAAGGCTTGATTGTGTGTCGTAAATCTCGGTGATGGTGGGCGCGTTGC
CGTTGTGGACCATTGGTGCATGCGTGGAGGGTCTTCGGAAGAGGAGAGCTTGGCGGCGAAAATTT
AGTGTCTACAGTATATTATCCTTCGTATTTAGAGTTTAAGATTTATGATTATATATTTATATATT
TTAGAGTTCAGTTTAGTGATAAAATCAACACATAAAGTTAATTCATTGAGTGATATTAATGGTTA
AAGGAAGTGTTGTTCTCCCTTCAGGTTCTAGGTTTGAGCAGTTGCGTTTGCAGGAAGTGTGTGTT
GTCAATGGTTAATAAAGAAGATTATGAGCAGAACTTTGCAATTACCCCATATTATTCTAAAAAAT
TTGATACACAGAGTGAAGTTCGAAAAAAGACACGACCACATCATTATGTTTTTAATGATTTAATG
TAACAATATTTTAATTTGATCTAAAACTAAAATTCAATATTAAAATTAAAATAATTTATTAATTT
AATGAAAAAAATTATACAAATTTTAAAATTAAATGATATTCAATATAATTTACCATTTATTTTGT
TACAGAGGATTTGTTTGTGGCATCCATT
Found at i:570726 original size:16 final size:16
Alignment explanation
Indices: 570705--570743 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
570695 TTATATTTTT
570705 TATTTTTTAAA-AAAA
1 TATTTTTTAAACAAAA
570720 TATTTTTTAAACAAAA
1 TATTTTTTAAACAAAA
570736 TATTTTTT
1 TATTTTTT
570744 TTAACATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTTTTTAAACAAAA
Found at i:575310 original size:24 final size:24
Alignment explanation
Indices: 575283--575329 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
575273 GATGAGCGTG
*
575283 GAGGTCGAGAAAGGGGAAGAGGAA
1 GAGGTAGAGAAAGGGGAAGAGGAA
* *
575307 GAGGTAGAGGAAGGGGGAGAGGA
1 GAGGTAGAGAAAGGGGAAGAGGA
575330 GGAAGATGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.55, T:0.04
Consensus pattern (24 bp):
GAGGTAGAGAAAGGGGAAGAGGAA
Found at i:575317 original size:12 final size:12
Alignment explanation
Indices: 575300--575385 Score: 70
Period size: 12 Copynumber: 7.2 Consensus size: 12
575290 AGAAAGGGGA
*
575300 AGAGGAAGAGGT
1 AGAGGAAGAGGG
*
575312 AGAGGAAGGGGGAG
1 AGAGGAA-GAGG-G
*
575326 AGGAGGAAGATGG
1 A-GAGGAAGAGGG
*
575339 AGAGGGAGAGGG
1 AGAGGAAGAGGG
*
575351 AGAGGGAGAGGG
1 AGAGGAAGAGGG
*
575363 AGAGG--GAGAG
1 AGAGGAAGAGGG
575373 -GAGGAAGAGGG
1 AGAGGAAGAGGG
575384 AG
1 AG
575386 GGGGAGTTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
9 4 0.07
10 4 0.07
11 4 0.07
12 34 0.57
13 5 0.08
14 3 0.05
15 6 0.10
ACGTcount: A:0.37, C:0.00, G:0.60, T:0.02
Consensus pattern (12 bp):
AGAGGAAGAGGG
Found at i:575318 original size:18 final size:18
Alignment explanation
Indices: 575297--575385 Score: 69
Period size: 18 Copynumber: 4.9 Consensus size: 18
575287 TCGAGAAAGG
*
575297 GGAAGAGGAAGAGGTAGA
1 GGAAGAGGAAGAGGGAGA
* *
575315 GGAAG-GG-GGAGAG-GA
1 GGAAGAGGAAGAGGGAGA
575330 GGAAGATGG-AGAGGGAGA
1 GGAAGA-GGAAGAGGGAGA
* *
575348 GGGAGAGGGAGAGGGAGA
1 GGAAGAGGAAGAGGGAGA
575366 GGGAGAGGAGGAAGAGGGAG
1 -GGA-A-GAGGAAGAGGGAG
575386 GGGGAGTTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
15 7 0.12
16 3 0.05
17 10 0.18
18 21 0.38
19 2 0.04
20 1 0.02
21 12 0.21
ACGTcount: A:0.37, C:0.00, G:0.61, T:0.02
Consensus pattern (18 bp):
GGAAGAGGAAGAGGGAGA
Found at i:575342 original size:27 final size:27
Alignment explanation
Indices: 575301--575355 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
575291 GAAAGGGGAA
*
575301 GAGGAAGAGGTAGAGGAAGGGGGAGAG
1 GAGGAAGAGGTAGAGGAAGAGGGAGAG
*
575328 GAGGAAGATGG-AGAGGGAGAGGGAGAG
1 GAGGAAGA-GGTAGAGGAAGAGGGAGAG
575355 G
1 G
575356 GAGAGGGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.60, T:0.04
Consensus pattern (27 bp):
GAGGAAGAGGTAGAGGAAGAGGGAGAG
Found at i:575343 original size:33 final size:33
Alignment explanation
Indices: 575297--575361 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
575287 TCGAGAAAGG
* *
575297 GGAAGAGGAAGAGGTAGAGGAAGGGGGAGAGGA
1 GGAAGAGGAAGAGGGAGAGGAAGAGGGAGAGGA
*
575330 GGAAGATGG-AGAGGGAGAGGGAGAGGGAGAGG
1 GGAAGA-GGAAGAGGGAGAGGAAGAGGGAGAGG
575362 GAGAGGGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.60, T:0.03
Consensus pattern (33 bp):
GGAAGAGGAAGAGGGAGAGGAAGAGGGAGAGGA
Found at i:575349 original size:45 final size:45
Alignment explanation
Indices: 575300--575391 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
575290 AGAAAGGGGA
* * *
575300 AGAGGAAGAGGTAGAGGAAGGGGGAGAGGAGGAAGATGGAGAGGG
1 AGAGGAAGAGGGAGAGGAAGAGGGAGAGGAGGAAGAGGGAGAGGG
* * *
575345 AGAGGGAGAGGGAGAGGGAGAGGGAGAGGAGGAAGAGGGAGGGGG
1 AGAGGAAGAGGGAGAGGAAGAGGGAGAGGAGGAAGAGGGAGAGGG
575390 AG
1 AG
575392 TTTTGGCTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.36, C:0.00, G:0.62, T:0.02
Consensus pattern (45 bp):
AGAGGAAGAGGGAGAGGAAGAGGGAGAGGAGGAAGAGGGAGAGGG
Found at i:575391 original size:6 final size:6
Alignment explanation
Indices: 575300--575373 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
575290 AGAAAGGGGA
* * * * *
575300 AGAGGA AGAGGT AGAGGA AGGGGG AGAGGAGG AAGATGG AGAGGG AGAGGG
1 AGAGGG AGAGGG AGAGGG AGAGGG AGA-G-GG -AGAGGG AGAGGG AGAGGG
575351 AGAGGG AGAGGG AGAGGG AGAGG
1 AGAGGG AGAGGG AGAGGG AGAGG
575374 AGGAAGAGGG
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
6 50 0.86
7 3 0.05
8 2 0.03
9 3 0.05
ACGTcount: A:0.36, C:0.00, G:0.61, T:0.03
Consensus pattern (6 bp):
AGAGGG
Found at i:577793 original size:24 final size:24
Alignment explanation
Indices: 577761--577821 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
577751 ATAAGAGGAT
577761 GGCCCGGTTACAAAGCAAATCACA
1 GGCCCGGTTACAAAGCAAATCACA
577785 GGCCCGGTTACAAAGCAAATCACA
1 GGCCCGGTTACAAAGCAAATCACA
577809 GGCCCGGTTACAA
1 GGCCCGGTTACAA
577822 CCAAACTCGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.34, C:0.30, G:0.23, T:0.13
Consensus pattern (24 bp):
GGCCCGGTTACAAAGCAAATCACA
Found at i:585669 original size:22 final size:22
Alignment explanation
Indices: 585644--585695 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
585634 TTATCTACAT
* * *
585644 TTTTCAAGAATTATAGATTCTC
1 TTTTCAAAAATGATAGATTATC
*
585666 TTTTCAAAAATGATAGATTATG
1 TTTTCAAAAATGATAGATTATC
585688 TTTTCAAA
1 TTTTCAAA
585696 GACAGAAAGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (22 bp):
TTTTCAAAAATGATAGATTATC
Found at i:586469 original size:46 final size:44
Alignment explanation
Indices: 586417--586741 Score: 165
Period size: 44 Copynumber: 7.3 Consensus size: 44
586407 ATTCGCTTTC
* *
586417 CACGGAAGAGTTGTGGAACAGATTTTTCAGCAAAGTATGAGAACTT
1 CACGGAAGAGTAGTGGAACAGATTATTCAGCAAAGTAT--GAACTT
* * ** *
586463 CACGGAAGAGTAGT-G-A-AG-TAATCCAAGTTTAAGTCTGAACTT
1 CACGGAAGAGTAGTGGAACAGATTATTC-AG-CAAAGTATGAACTT
* * * * *
586505 CACGGAAGAGTAGTGGAAGCAAATTCAATCA-TAAA-TCTGAACTC
1 CACGGAAGAGTAGTGGAA-CAGATT-ATTCAGCAAAGTATGAACTT
* *
586549 CACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAGAACTT
1 CACGGAAGAGTAGTGGAACAGATTATTCAGCAAAGTAT--GAACTT
* * *** *
586595 CACGGAAGAGTAGT-G-A-AG-TAATCCAAGTTTGAGTCTGAACTT
1 CACGGAAGAGTAGTGGAACAGATTATTC-AG-CAAAGTATGAACTT
* * * ** *
586637 CACAGAAGAGTAGTGGAAGCA-A--ATTCAACCATAAATCCGAACTC
1 CACGGAAGAGTAGTGGAA-CAGATTATTC-AGCA-AAGTATGAACTT
*
586681 CACGGAAGAGTAGTGGAACAGAATT-TTTAGCAAAGTATGCAACCTT
1 CACGGAAGAGTAGTGGAACAG-ATTATTCAGCAAAGTATG-AA-CTT
586727 CACGGAAGAGTAGTG
1 CACGGAAGAGTAGTG
586742 AAGTAATCCG
Statistics
Matches: 209, Mismatches: 44, Indels: 52
0.69 0.14 0.17
Matches are distributed among these distances:
42 48 0.23
43 18 0.09
44 75 0.36
45 11 0.05
46 53 0.25
47 2 0.01
48 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (44 bp):
CACGGAAGAGTAGTGGAACAGATTATTCAGCAAAGTATGAACTT
Found at i:586559 original size:44 final size:43
Alignment explanation
Indices: 586457--586698 Score: 190
Period size: 44 Copynumber: 5.6 Consensus size: 43
586447 CAAAGTATGA
* * * *
586457 GAACTTCACGGAAGAGTAGT-GAAGTAATCCAAGT-TTAAGTCT
1 GAACTTCACGGAAGAGTAGTGGAAGAAATTCAA-TCATAAATCT
586499 GAACTTCACGGAAGAGTAGTGGAAGCAAATTCAATCATAAATCT
1 GAACTTCACGGAAGAGTAGTGGAAG-AAATTCAATCATAAATCT
* ** * **
586543 GAACTCCACGGAAGAGTAGTGGAACGGATTTTTC-AGCA-AAGTATGA
1 GAACTTCACGGAAGAGTAGTGGAA--GA-AATTCAATCATAA--ATCT
* * * * *
586589 GAACTTCACGGAAGAGTAGT-GAAGTAATCCAAGT-TTGAGTCT
1 GAACTTCACGGAAGAGTAGTGGAAGAAATTCAA-TCATAAATCT
* * *
586631 GAACTTCACAGAAGAGTAGTGGAAGCAAATTCAACCATAAATCC
1 GAACTTCACGGAAGAGTAGTGGAAG-AAATTCAATCATAAATCT
*
586675 GAACTCCACGGAAGAGTAGTGGAA
1 GAACTTCACGGAAGAGTAGTGGAA
586699 CAGAATTTTT
Statistics
Matches: 155, Mismatches: 31, Indels: 26
0.73 0.15 0.12
Matches are distributed among these distances:
42 42 0.27
43 11 0.07
44 70 0.45
45 7 0.05
46 25 0.16
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (43 bp):
GAACTTCACGGAAGAGTAGTGGAAGAAATTCAATCATAAATCT
Found at i:586652 original size:132 final size:132
Alignment explanation
Indices: 586415--586915 Score: 631
Period size: 132 Copynumber: 3.8 Consensus size: 132
586405 AAATTCGCTT
*
586415 TCCACGGAAGAGTTGTGGAAC-AGATTTTTCAGCAAAGTATGAGAACTTCACGGAAGAGTAGTGA
1 TCCACGGAAGAGTAGTGGAACGA-ATTTTTCAGCAAAGTATGAGAACTTCACGGAAGAGTAGTGA
* *
586479 AGTAATCCAAGTTTAAGTCTGAACTTCACGGAAGAGTAGTGGAAGCAAATTCAATCATAAATCTG
65 AGTAATCCAAGTTTGAGTCTGAACTTCACAGAAGAGTAGTGGAAGCAAATTCAATCATAAATCTG
586544 AAC
130 AAC
*
586547 TCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAGAACTTCACGGAAGAGTAGTGAA
1 TCCACGGAAGAGTAGTGGAACGAATTTTTCAGCAAAGTATGAGAACTTCACGGAAGAGTAGTGAA
* *
586612 GTAATCCAAGTTTGAGTCTGAACTTCACAGAAGAGTAGTGGAAGCAAATTCAACCATAAATCCGA
66 GTAATCCAAGTTTGAGTCTGAACTTCACAGAAGAGTAGTGGAAGCAAATTCAATCATAAATCTGA
586677 AC
131 AC
*
586679 TCCACGGAAGAGTAGTGGAACAGAATTTTT-AGCAAAGTATGCA-ACCTTCACGGAAGAGTAGTG
1 TCCACGGAAGAGTAGTGGAAC-GAATTTTTCAGCAAAGTATG-AGAACTTCACGGAAGAGTAGTG
* * * * * * *** *
586742 AAGTAATCCGA-TTTCGAGCCAG-TCTTCATAAAAGAGTAGCAAAAGCAAGA-ACAAACTCA-AA
64 AAGTAATCCAAGTTT-GAGTCTGAACTTCACAGAAGAGTAGTGGAAGCAA-ATTC-AA-TCATAA
**
586803 AT-TCGCTC
125 ATCT-GAAC
* *
586811 TCCATGGAAGAGTAGTGGTACGAATTTTTCAGCAAAGTATGAGAACTTCACGGAAGAGTAGTGAA
1 TCCACGGAAGAGTAGTGGAACGAATTTTTCAGCAAAGTATGAGAACTTCACGGAAGAGTAGTGAA
** * * **
586876 GTAATATAAGTTTGAATCTGAATTTCATGGAAGAGTAGTG
66 GTAATCCAAGTTTGAGTCTGAACTTCACAGAAGAGTAGTG
586916 AAACAGATTC
Statistics
Matches: 320, Mismatches: 37, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
131 33 0.10
132 261 0.82
133 26 0.08
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (132 bp):
TCCACGGAAGAGTAGTGGAACGAATTTTTCAGCAAAGTATGAGAACTTCACGGAAGAGTAGTGAA
GTAATCCAAGTTTGAGTCTGAACTTCACAGAAGAGTAGTGGAAGCAAATTCAATCATAAATCTGA
AC
Found at i:587263 original size:12 final size:11
Alignment explanation
Indices: 587243--587280 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
587233 GAGTGTTATG
587243 ATTAGTATATAT
1 ATTA-TATATAT
587255 ATTAT-TATAT
1 ATTATATATAT
587265 ATTATTATATAT
1 ATTA-TATATAT
587277 ATTA
1 ATTA
587281 ATTAATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.38
11 2 0.08
12 13 0.54
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (11 bp):
ATTATATATAT
Found at i:587265 original size:10 final size:10
Alignment explanation
Indices: 587250--587280 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
587240 ATGATTAGTA
587250 TATATATTAT
1 TATATATTAT
587260 TATATATTAT
1 TATATATTAT
587270 TATATA-TAT
1 TATATATTAT
587279 TA
1 TA
587281 ATTAATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.24
10 16 0.76
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TATATATTAT
Found at i:587268 original size:22 final size:22
Alignment explanation
Indices: 587243--587290 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
587233 GAGTGTTATG
587243 ATTAGTATATATATT-ATTATAT
1 ATTAGTATATATATTAATTA-AT
*
587265 ATTATTATATATATTAATTAAT
1 ATTAGTATATATATTAATTAAT
587287 ATTA
1 ATTA
587291 CAAACGGAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
ATTAGTATATATATTAATTAAT
Found at i:587288 original size:10 final size:11
Alignment explanation
Indices: 587250--587290 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
587240 ATGATTAGTA
587250 TATATATT-AT
1 TATATATTAAT
*
587260 TATATATTATT
1 TATATATTAAT
587271 ATATATATTAAT
1 -TATATATTAAT
587283 TA-ATATTA
1 TATATATTA
587291 CAAACGGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 14 0.52
11 3 0.11
12 10 0.37
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATATATTAAT
Found at i:587288 original size:12 final size:11
Alignment explanation
Indices: 587251--587288 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
587241 TGATTAGTAT
587251 ATATATTATT-
1 ATATATTATTA
587261 ATATATTATTA
1 ATATATTATTA
587272 TATATATTAATTA
1 -ATATATT-ATTA
587285 ATAT
1 ATAT
587289 TACAAACGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 10 0.40
12 11 0.44
13 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
ATATATTATTA
Found at i:589390 original size:4 final size:4
Alignment explanation
Indices: 589381--599147 Score: 7770
Period size: 4 Copynumber: 2444.2 Consensus size: 4
589371 AAAATCAAAT
*
589381 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
589429 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC
589478 ATAAC ATAC -TAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC
1 AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
589524 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
589572 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
589620 ATAC ATAC ATAC AT-C ATAC ATAC AT-C ATAC ATAC ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
589666 ATAC ATAC --AC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
589710 ATGC ATGC ATGC ATGC ATAC ATAC --AC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
589756 ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATAC -TAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
589803 ATAC ATGC ATAC -TAG ATAC ATGC ATGC ATGC ATGC ATGC ATGC A-ACC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C
* * * * *
589850 AATTC ATAT ATGC ATGC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC
1 -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * * * * *
589899 ATAC ATAG ATAC A-AGC ATGT ATGC ATAC ATGC ATGC ATCAA ATTC ATAT
1 ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC
* *
589948 ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
589996 ATA- ATAC ATAC ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
590042 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
590089 ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
590135 ATAC ATAC ATAC A-CC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
590181 ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
590228 ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC
** *
590276 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGT ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
590324 ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
590372 ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATGC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
590420 ATGC ATAC ATGC ATGC ATAC AATAC ATAT GTGC ATGC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
590467 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA- ATAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
590512 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
590559 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
590605 ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
590653 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
590700 ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
590746 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC
590795 ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
590842 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** *
590890 ATAC AATAC ATAT ATGT ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
590939 ATGTAC ATAC ATAC ATGC ATAC ATAT ATAC ATAC ATAC ATACC ATAC ATAC
1 A--TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC
* * * * * * *
590990 --AC ATGC ATGC ATATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAT GTGC
1 ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
591038 ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
591082 ATAC ATAC --AC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
591127 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
591175 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
591223 ATGC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
591271 ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
591319 ATAC ATAC AATAC ATAT ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
591368 ATAC ATAC ATGA- ATAC ATAC ATAC ATGC ATAT ATAT ATAC ATAC ATAC
1 ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
591416 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
591464 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
591510 ATAC ATAC ATAC TTAC ATAC TTAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
591558 ATAC AT-- ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
591603 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
591651 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
591699 ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
591747 ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
591795 ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
591843 ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
591891 ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAG ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
591939 ATAC ATGC ATGC ATGC ATCC AATTC ATAT ATGC ATGC ATAC AT-T ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * ** * * * *
591987 ATAC ATAG ATAC ATGC ATGT ATAC ATAC ATGC ATGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
592035 ATAC ATGC ATGC ATGC ATCC AATTC ATAT ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * ** * * * *
592084 ATAC ATAT ATAG ATAC ATGC ATGT ATGC ATAC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
592132 ATGC ATGC ATGC ATGC ATCC AATTC ATAT ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * ** *
592181 ATAT ATAC ATAC ATAC ATAC ATAC ATAG ATAC ATGC ATGT ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
592229 ATGC ATGC ATAC ATGC ATGC ATGC ATCC AATTC ATAT ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC
592278 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
592326 ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
592373 ATA- ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
592418 ATAC AATAC ATAT ATGC ATGC ATAC ATAC ATAC ATAC ATAC ACAAC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC
* * * *
592468 ATAC ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAG ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
592516 ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATAC AATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC
* * * *
592565 GTGC ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
592613 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAG ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * ** ** ** ** ** ** ** **
592661 ATGC ATGT ATGC ATATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * * * ** * * * * **
592711 ATAT ATGT ATGC ATGCAC ATAT GTA- TTGT ATGC ATGC AT-G ATGC ATGT
1 ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * ** * * * * * * * * * *
592759 ATGC AGTATGC ATGC ATGC ATGT AT-C -TAT GTAT GTAT GTAT GTAT GTA-
1 ATAC A-TA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * ** ** ** ** * * * * * * * * * * *
592807 ATATGT ATGC ATGT ATGT ATGT ATGT ATAT GTAT GTAT GTAT GTAT GTAT
1 ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * * * * * * * * * * * * * * * *
592857 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * * * * * * ** ** ** ** **
592905 GTAT GTAT GTAT GTAT GTAT GTAT GTAGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** ** ** **
592954 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** ** ** **
593002 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * ** * * ** * ** * **
593050 ATGC ATGCAC ATAT GTA- TTGT ATGC ATGC ATGT ATGC ATGT ATGC ATGT
1 ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * ** ** ** ** ** ** ** ** **
593099 ATGC ATGC ATGC ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * ** ** ** ** ** ** ** **
593147 ATAT ATGT ATGC ATGT ATGT ATGT ATAC ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** * * * ** ** ** ** **
593195 ATGT ATGT ATGT ATGT ATGC ATGC ATAT ATGT ATTGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC
** * ** ** * * * * ** * * **
593244 ATGT ATAT ATGT ATGT ATGC ATGCAC ATAT GTA- TTGT ATGC ATGC ATGT
1 ATAC ATAC ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * ** * * * ** ** ** **
593293 ATGC ATGT ATGC ATGT ATGC ATGC ATGC ATGT AT-C TATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC
** ** ** * ** * ** ** ** ** ** **
593341 ATGT ATGT ATGT ATAT ATGT ATGC ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** ** ** **
593389 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** * *
593437 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
593485 ATAC ATAT ATAC ATAC ATAC ATAC ATAG ATAG ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
593533 ATAC ATGC ATAC ATGC ATATGC ATGC ATAC ATAT GTGC ATGC ATAC AT--
1 ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
593581 ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * ** * * * * *
593629 ATAC ATAT ATAG ATAC ATGC ATGT ATGC ATGC ATGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
593677 ATGC ATGC ATGC A-A- ATTC ATAT ATGC ATAC ATAC ATAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * ** * * *
593723 A-AC AT-C ATAC ATAC ATAG ATAC ATGC ATGT ATGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
593769 ATAC ATGC ATGC ATAC ATGC ATGC ATGC ATCC AATTC ATAT ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC
*
593818 ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
593866 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
593914 ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
593962 ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
594010 ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * ** * *
594058 ATAG ATAC ATGC ATTC ATGC ATGC ATGC ATGT ATGC ATGC ATAC AATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC
* **
594107 ATATGC ATGC ATAC -TAC ATAC ATAC -TAC ATAC ATAC ATAC ATGT ATAC
1 ATA--C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
594155 ATAC ATAC ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
594203 ATAC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
594251 AATAC ATAT GTGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
594300 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
594348 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
594396 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
594444 AATAC ATAT ATGC ATGC ATAC ATAC ATAC ATAC ATAC AAAC ATAC ATAC
1 -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
594493 ATAC ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAG ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
594541 ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATAC AATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC
* * * *
594590 GTGC ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
594638 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * ** * * ** ** ** ** ** **
594686 ATAG ATAC ATGC ATGT ATGC ATATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** * ** * * * * ** *
594736 ATGT ATGT ATGT ATGT ATAT ATGT ATGC ATGCAC ATAT GTA- TTGT ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC
* ** * ** * ** ** ** ** ** **
594785 ATGC ATGT ATGC ATGT ATGC ATGT ATGT ATGT ATGT ATGT ATAC ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** * * * **
594833 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGC ATAT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** * ** ** * * *
594881 ATTGT ATGT ATGT ATGT ATGT ATAT ATGT ATGT ATGC ATGCAC ATAT GTA-
1 A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT--AC ATAC ATAC
* ** * * ** * ** * ** * * * **
594931 TTGT ATGC ATGC ATGT ATGC ATGT ATGC ATGT ATGC ATGC ATGC ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** * ** * ** ** **
594979 AT-C TATGT ATGT ATGT ATGT ATGT ATAT ATGT ATGC ATGT ATGT ATGT
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** ** ** **
595027 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** ** ** ** ** ** ** ** ** ** ** *
595075 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
595123 ATAC ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAG ATAG ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
595171 ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATAC AATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC
* * * *
595220 GTGC ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * ** *
595268 ATAC ATAC ATAC ATAC ATAC ATAT ATAG ATAC ATGC ATGT ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * * *
595316 ATGC ATGC ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATCC AATTC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC
* * *
595365 ATGC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAG ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * * * * * *
595413 ATGC ATGT ATGC ATAC ATGC ATGC ATAC ATGC ATGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
595461 ATGC ATCC AATTC ATAT ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
595510 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
595558 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
595606 ACAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
595654 ATAC ATGC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
595702 ATAC ATAT ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAG
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * ** * * *
595750 ATAC ATGC ATTC ATGC ATGC ATGC ATGT ATGC ATGC ATGC ATAC ATGA-
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC
* * * * * * * * * **
595798 TTGC ATAC ATGC ATGC ATGC ATCC AATTC ATAT ATGC ATGT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
595847 ATAG ATAC ATGC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
595895 ATGC ATGC ATAC ATAC ATAC ATGA- ATAC ATAC ATAC ATGC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC
*
595943 ATAC ATAC ATAC ATAC ATAC ATAG ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
**
595991 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGT ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
596039 ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
596087 ATGC ATGC ATAC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
596135 ATGC ATAC AATAC ATAT GTGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
596184 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
596232 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
596280 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
596328 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
596376 ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAA ATAG ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
596424 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATGC ATAC AATAC ATAT GTGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC
* *
596473 ATGC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
596521 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
596569 ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
596617 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAG
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
596665 ATAC ATGC ATTC ATGC ATAC ATGC ATGC ATAC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * ** * *
596713 ATGC ATGC ATCC AATTC ATAT ATGC ATGT ATAC ATAC ATAG ATAC ATGC
1 ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * * *
596762 ATAC ATAC ATAC ATAC AGGC ATGC ATAC ATAC ATAC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
596810 ATAC ATAC ATGA- ATAC ATAC ATAC ATGC ATAC ATAT ATAC ATAC ATAC
1 ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
596858 ATAC ATAC ATAG ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
596906 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
596954 ATAC ATAC ATAC ATAC TTAC ATAC TTAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * **
597002 ATAC ATAT ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
597050 ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAG
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
597098 ATAC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATGC ATAC AATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC
* * *
597147 GTGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
597195 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
597243 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
597291 ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
597339 ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
597387 ATAC ATGC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
597433 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
597481 ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
597529 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAG
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
597577 ATAC ATGC ATTC ATGC ATAC ATGC ATGC ATAC ATGC ATGC ATGC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * ** * * * *
597625 AATTC ATAT ATGC ATGT ATAC ATAC ATAG ATAC ATAG ATAC ATGC ATGC
1 -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
597674 ATGC ATAC ATGC ATGC ATAC ATGC ATGC ATGC ATCC AATTC ATAT ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC
* ** * * * *
597723 ATGC ATAC ATGT ATAC ATAC ATAG ATAC ATGC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
597771 ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATCC AATTC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC
* * *
597820 ATAT ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
597868 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
597916 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
597964 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
598012 ATAC ATAC ATAT ATAC ATGC ATGC ATGC ATGC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
598060 ATAC ATAC ATAC ATAT ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
598108 ATAC ATAC ATAC ATA- ATAC ATAC ATA- ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
598154 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
598202 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
598250 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATTC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
598298 ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
598346 ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATGC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
598394 ATGC ATAC ATAC ATAC ATGC ATGC ATCC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
598442 ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAG ATAC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * **
598490 ATAC ATGC ATGC ATAC ATGC ATGC ATGC ATCC AATTC ATAT ATGC ATGT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC
* * * * * * *
598539 ATAC ATAC ATAG ATAC ATAG ATAC ATGC ATGC ATGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * ** * * * **
598587 ATAC ATGC ATGC ATGC ATCC AATTT ATAT ATGC ATGC ATAC ATGT ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
598636 ATAC ATAG ATAC ATGC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * ** *
598684 --AC ATAC ATAC ATGC ATGC ATGC ATCC AATTC ATAT ATGT ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC
598731 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
598779 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
598827 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
598875 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
598923 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** *
598971 ATGC ATAC ATAC ATAC ATAC ATGT ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
599019 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
599067 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
599115 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
599148 CAGATCAAGT
Statistics
Matches: 8689, Mismatches: 914, Indels: 320
0.88 0.09 0.03
Matches are distributed among these distances:
2 40 0.00
3 93 0.01
4 8381 0.96
5 134 0.02
6 39 0.00
7 2 0.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (4 bp):
ATAC
Found at i:592756 original size:11 final size:12
Alignment explanation
Indices: 592740--592780 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
592730 TATGTATTGT
592740 ATGCATGCATG-
1 ATGCATGCATGC
*
592751 ATGCATGTATGC
1 ATGCATGCATGC
*
592763 A-GTATGCATGC
1 ATGCATGCATGC
592774 ATGCATG
1 ATGCATG
592781 TATCTATGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (12 bp):
ATGCATGCATGC
Found at i:599678 original size:7 final size:7
Alignment explanation
Indices: 599668--599815 Score: 85
Period size: 7 Copynumber: 21.3 Consensus size: 7
599658 ATAAAGAGAG
599668 AAGAAAA
1 AAGAAAA
599675 AAGAAGAA
1 AAGAA-AA
*
599683 AA-AAAG
1 AAGAAAA
599689 AA-AAAA
1 AAGAAAA
* *
599695 CATAAAA
1 AAGAAAA
599702 AAGAGAGAA
1 AAGA-A-AA
599711 AAG-AAA
1 AAGAAAA
*
599717 AA-AAAG
1 AAGAAAA
599723 AAGAAAA
1 AAGAAAA
*
599730 AA-ACACA
1 AAGA-AAA
*
599737 CAG-AAA
1 AAGAAAA
* *
599743 AAGATAG
1 AAGAAAA
*
599750 AA-AAGA
1 AAGAAAA
*
599756 AAGAAAG
1 AAGAAAA
599763 AAGAAAA
1 AAGAAAA
*
599770 AAGATAA
1 AAGAAAA
599777 AAGAAAA
1 AAGAAAA
599784 AAGAAAA
1 AAGAAAA
599791 AAGAAAAAA
1 AAG--AAAA
*
599800 AAGAAAG
1 AAGAAAA
599807 AAGAAAA
1 AAGAAAA
599814 AA
1 AA
599816 CCAATCAAAT
Statistics
Matches: 106, Mismatches: 23, Indels: 24
0.69 0.15 0.16
Matches are distributed among these distances:
6 23 0.22
7 66 0.62
8 5 0.05
9 12 0.11
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.02
Consensus pattern (7 bp):
AAGAAAA
Found at i:599693 original size:9 final size:9
Alignment explanation
Indices: 599668--599805 Score: 84
Period size: 9 Copynumber: 14.7 Consensus size: 9
599658 ATAAAGAGAG
599668 AAGAAAAAA
1 AAGAAAAAA
599677 GAAG-AAAAA
1 -AAGAAAAAA
599686 AAGAAAAAA
1 AAGAAAAAA
* *
599695 CATAAAAAA
1 AAGAAAAAA
*
599704 GAGAGAAAAGA
1 -A-AGAAAAAA
*
599715 AA-AAAAAG
1 AAGAAAAAA
599723 AAGAAAAAA
1 AAGAAAAAA
* *
599732 ACACACAGAAA
1 A-AGA-AAAAA
* *
599743 AAGATAGAA
1 AAGAAAAAA
*
599752 AAG-AAAGA
1 AAGAAAAAA
599760 AAGAAGAAAA
1 AAGAA-AAAA
599770 AAGATAAAAGA
1 AAGA-AAAA-A
*
599781 AAAAAGAAAA
1 AAGAA-AAAA
599791 AAGAAAAAA
1 AAGAAAAAA
599800 AAGAAA
1 AAGAAA
599806 GAAGAAAAAA
Statistics
Matches: 97, Mismatches: 20, Indels: 23
0.69 0.14 0.16
Matches are distributed among these distances:
8 14 0.14
9 40 0.41
10 24 0.25
11 19 0.20
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.02
Consensus pattern (9 bp):
AAGAAAAAA
Found at i:599705 original size:41 final size:39
Alignment explanation
Indices: 599660--599816 Score: 149
Period size: 41 Copynumber: 3.9 Consensus size: 39
599650 TATATAAAAT
* *
599660 AAAGAGAGAAGAAAAAAGAAGAAAAAAAGAAAAAACATAAAA
1 AAAGAGAAAAGAAAAAA-AAG-AAAAAAGAAAAAACA-GAAA
*
599702 AAGAGAGAAAAGAAAAAAAAGAAGAAAA-AAACACACAGAAA
1 AA-AGAGAAAAGAAAAAAAAGAA-AAAAGAAA-AAACAGAAA
* *
599743 AAGATAGAAAAGAAAGAAAGAAGAAAAAAG-ATAAA-AGAAA
1 AA-AGAGAAAAGAAA-AAA-AAGAAAAAAGAAAAAACAGAAA
* *
599783 AAAGAAAAAAGAAAAAAAAGAAAGAAGAAAAAAC
1 AAAGAGAAAAGAAAAAAAAGAAAAAAGAAAAAAC
599817 CAATCAAATA
Statistics
Matches: 97, Mismatches: 10, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
37 9 0.09
38 7 0.07
39 10 0.10
40 7 0.07
41 24 0.25
42 21 0.22
43 19 0.20
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.02
Consensus pattern (39 bp):
AAAGAGAAAAGAAAAAAAAGAAAAAAGAAAAAACAGAAA
Found at i:599771 original size:68 final size:68
Alignment explanation
Indices: 599672--599800 Score: 158
Period size: 68 Copynumber: 1.9 Consensus size: 68
599662 AGAGAGAAGA
* *
599672 AAAAAGAAGAAAAAAAGAAAAAACATAAAAAAGAGAGAAA-AGAAAAA-AAAGAAGAAAAAAACA
1 AAAAAGAAGAAAAAAAGAAAAAACAGAAAAAAGAGA-AAAGA-AAAAAGAAAAAAGAAAAAAACA
599735 CACAG
64 CACAG
* *
599740 AAAAAGATAGAAAAGAAAG-AAAGA-AGAAAAAAGATAAAAGAAAAAAGAAAAAAGAAAAAAA
1 AAAAAGA-AGAAAA-AAAGAAAAAACAGAAAAAAGAGAAAAGAAAAAAGAAAAAAGAAAAAAA
599801 AGAAAGAAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
67 8 0.15
68 31 0.58
69 10 0.19
70 4 0.08
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.02
Consensus pattern (68 bp):
AAAAAGAAGAAAAAAAGAAAAAACAGAAAAAAGAGAAAAGAAAAAAGAAAAAAGAAAAAAACACA
CAG
Found at i:599930 original size:15 final size:15
Alignment explanation
Indices: 599910--599946 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
599900 ACAAGACACA
599910 CGAGCAAATTCAAGT
1 CGAGCAAATTCAAGT
599925 CGAGCAAATTCAAGT
1 CGAGCAAATTCAAGT
*
599940 CAAGCAA
1 CGAGCAA
599947 GACAAGATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.43, C:0.22, G:0.19, T:0.16
Consensus pattern (15 bp):
CGAGCAAATTCAAGT
Found at i:601823 original size:55 final size:55
Alignment explanation
Indices: 601763--602022 Score: 369
Period size: 55 Copynumber: 4.7 Consensus size: 55
601753 TAACGTGATT
*
601763 TTTTTAAAGAAACTGAGTCTGATTTTTGGAAGTTTCTTGATTATTTTTAAATGAG
1 TTTTTAAAGAAACTAAGTCTGATTTTTGGAAGTTTCTTGATTATTTTTAAATGAG
* *
601818 TTTTTAAAGAAAATAAGTCTGATTTTTGAAAGTTTCTTGATTATTTTTAAATGAG
1 TTTTTAAAGAAACTAAGTCTGATTTTTGGAAGTTTCTTGATTATTTTTAAATGAG
* *
601873 TTTTTAAAGAAACTAAGTCCGATTTATGGAAGTTTCTTGATTATTTTTAAATGAG
1 TTTTTAAAGAAACTAAGTCTGATTTTTGGAAGTTTCTTGATTATTTTTAAATGAG
* * * * *
601928 CTTTTAAAGAAACTAAGTCTGATTTTTAGAAGTTTCTTAATGATTTTTAAATGAAC
1 TTTTTAAAGAAACTAAGTCTGATTTTTGGAAGTTTCTTGATTATTTTTAAATG-AG
* * ** *
601984 TTTCT-AAGAAACTAAGTTTGATTTTCAGAGGTTTCTTGA
1 TTTTTAAAGAAACTAAGTCTGATTTTTGGAAGTTTCTTGA
602023 CATGATGAAT
Statistics
Matches: 184, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
55 180 0.98
56 4 0.02
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (55 bp):
TTTTTAAAGAAACTAAGTCTGATTTTTGGAAGTTTCTTGATTATTTTTAAATGAG
Found at i:602111 original size:53 final size:53
Alignment explanation
Indices: 602054--602392 Score: 402
Period size: 53 Copynumber: 6.4 Consensus size: 53
602044 ATTAAGCTTG
* *
602054 ATTTTCATGGGTTTCTTGGTGTTTTCAAATGAATTTTAAAAAAGCTAAGCCTA
1 ATTTTCAGGGGTTTCTTGATGTTTTCAAATGAATTTTAAAAAAGCTAAGCCTA
* * * *
602107 ATTTTTAGGGGTTTCTTGATGTTTTCAAATGAATTTGAAAGAAGCTAAGCCTG
1 ATTTTCAGGGGTTTCTTGATGTTTTCAAATGAATTTTAAAAAAGCTAAGCCTA
* * * *
602160 ATTTTCAAGGATTTCTTGAT-TATTTCCAATGGA-TTTAAAATAAGCTAAGCCTA
1 ATTTTCAGGGGTTTCTTGATGT-TTTCAAATGAATTTTAAAA-AAGCTAAGCCTA
* *
602213 ATTTTTAGGGGTTTCTTGATGTTTTCAAATGAA-TTTAAAAGAAGATAAGCCTA
1 ATTTTCAGGGGTTTCTTGATGTTTTCAAATGAATTTTAAAA-AAGCTAAGCCTA
* * * * *
602266 ATTTTTAGTGTTTTCTTGATGATTTT-AAATGAATTTTATAAAAGCTAAGCCTG
1 ATTTTCAGGGGTTTCTTGATG-TTTTCAAATGAATTTTAAAAAAGCTAAGCCTA
* * *
602319 ATTTTCAGTGGTTTCTTGATGTTTT-AAATGAATTTTTATAGAAGCTAAGCCTA
1 ATTTTCAGGGGTTTCTTGATGTTTTCAAATGAA-TTTTAAAAAAGCTAAGCCTA
602372 AGTTTT-AGGGGTTTCTTGATG
1 A-TTTTCAGGGGTTTCTTGATG
602393 ACAACTAAGA
Statistics
Matches: 248, Mismatches: 31, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
52 17 0.07
53 216 0.87
54 15 0.06
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.42
Consensus pattern (53 bp):
ATTTTCAGGGGTTTCTTGATGTTTTCAAATGAATTTTAAAAAAGCTAAGCCTA
Found at i:602236 original size:159 final size:159
Alignment explanation
Indices: 602062--602392 Score: 458
Period size: 159 Copynumber: 2.1 Consensus size: 159
602052 TGATTTTCAT
* *
602062 GGGTTTCTTGGTGTTTTCAAATGAATTTTAAAA-AAGCTAAGCCTAATTTTTAGGGGTTTCTTGA
1 GGGTTTCTTGATGTTTTCAAATGAA-TTTAAAAGAAGATAAGCCTAATTTTTAGGGGTTTCTTGA
*
602126 TG-TTTTCAAATGAATTTGA-AAGAAGCTAAGCCTGATTTTCAAG-GATTTCTTGAT-TATTTCC
65 TGATTTT-AAATGAATTTGATAA-AAGCTAAGCCTGATTTTC-AGTGATTTCTTGATGT-TTT-A
* * *
602187 AATGGA-TTTAAAATAAGCTAAGCCTAATTTTTAG
125 AATGAATTTTAAAAGAAGCTAAGCCTAAGTTTTAG
* *
602221 GGGTTTCTTGATGTTTTCAAATGAATTTAAAAGAAGATAAGCCTAATTTTTAGTGTTTTCTTGAT
1 GGGTTTCTTGATGTTTTCAAATGAATTTAAAAGAAGATAAGCCTAATTTTTAGGGGTTTCTTGAT
* *
602286 GATTTTAAATGAATTTTATAAAAGCTAAGCCTGATTTTCAGTGGTTTCTTGATGTTTTAAATGAA
66 GATTTTAAATGAATTTGATAAAAGCTAAGCCTGATTTTCAGTGATTTCTTGATGTTTTAAATGAA
* *
602351 TTTTTATAGAAGCTAAGCCTAAGTTTTAG
131 TTTTAAAAGAAGCTAAGCCTAAGTTTTAG
602380 GGGTTTCTTGATG
1 GGGTTTCTTGATG
602393 ACAACTAAGA
Statistics
Matches: 154, Mismatches: 12, Indels: 12
0.87 0.07 0.07
Matches are distributed among these distances:
158 14 0.09
159 133 0.86
160 7 0.05
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (159 bp):
GGGTTTCTTGATGTTTTCAAATGAATTTAAAAGAAGATAAGCCTAATTTTTAGGGGTTTCTTGAT
GATTTTAAATGAATTTGATAAAAGCTAAGCCTGATTTTCAGTGATTTCTTGATGTTTTAAATGAA
TTTTAAAAGAAGCTAAGCCTAAGTTTTAG
Found at i:602476 original size:42 final size:42
Alignment explanation
Indices: 602430--602543 Score: 106
Period size: 42 Copynumber: 2.7 Consensus size: 42
602420 AAGGGTTTCT
* *
602430 TGATGAGTAAGTTATTCGGGCCATC-AGTAATTATTTCGAGCA
1 TGATGAGTAAGTCATTCGGGCCATCTA-TAAGTATTTCGAGCA
* * * *
602472 TGATGTGTAAGTCCTTCGGGCTATCTATAAGTCTTTCGAGCA
1 TGATGAGTAAGTCATTCGGGCCATCTATAAGTATTTCGAGCA
* * * * *
602514 AGATGA-TAAGTCCTTTGAGCCATCCATAAG
1 TGATGAGTAAGTCATTCGGGCCATCTATAAG
602544 ACCTTCGGGC
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 20 0.34
42 38 0.64
43 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (42 bp):
TGATGAGTAAGTCATTCGGGCCATCTATAAGTATTTCGAGCA
Found at i:602543 original size:41 final size:42
Alignment explanation
Indices: 602463--602543 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 42
602453 TCAGTAATTA
* * * * *
602463 TTTCGAGCATGATGTGTAAGTCCTTCGGGCTATCTATAAGTC
1 TTTCGAGCAAGATGTATAAGTCCTTCGAGCCATCCATAAGTC
*
602505 TTTCGAGCAAGATG-ATAAGTCCTTTGAGCCATCCATAAG
1 TTTCGAGCAAGATGTATAAGTCCTTCGAGCCATCCATAAG
602544 ACCTTCGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
41 20 0.61
42 13 0.39
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (42 bp):
TTTCGAGCAAGATGTATAAGTCCTTCGAGCCATCCATAAGTC
Found at i:602707 original size:145 final size:145
Alignment explanation
Indices: 602521--602893 Score: 559
Period size: 145 Copynumber: 2.6 Consensus size: 145
602511 GCAAGATGAT
* * * *
602521 AAGTCCTTTGAGCCATCCATAAGACCTTCGGGCATGATGTTTTCAACATTTCCTTTACTTGATTC
1 AAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCAACATTTCCTTTGCTTGATTC
* * * *
602586 ACAACACTTTAAATCATCAACGCCTCACCAGGGGGGTTAACATTTCATATTGCTCA-ATTCACAA
66 ACAACACTTTGAATCAGCAACGCCCCACCAGAGGGGTTAACATTTCATATTGCT-AGATTCACAA
602650 CACTTCGAATCAGCTA
130 CACTTCGAATCAGCTA
* *
602666 AAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCAACATTTCCTTTGGTCGATTC
1 AAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCAACATTTCCTTTGCTTGATTC
*
602731 ACAACACTTCGAATCAGCAACGCCCCACCAGAGGGGTTAACATTTCATATTGCTAGATTCACAAC
66 ACAACACTTTGAATCAGCAACGCCCCACCAGAGGGGTTAACATTTCATATTGCTAGATTCACAAC
*
602796 ACTTCGAATCAGCTT
131 ACTTCGAATCAGCTA
* * * * *
602811 AAGTCTTTCAGGTCATCCATAAGACCTTCGGGCAGAATGTTTTCAACATTTCTTTTGCTTGATTC
1 AAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCAACATTTCCTTTGCTTGATTC
* *
602876 ACGACATTTTGAATCAGC
66 ACAACACTTTGAATCAGC
602894 GATGCCTCAC
Statistics
Matches: 205, Mismatches: 22, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
144 1 0.00
145 204 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (145 bp):
AAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCAACATTTCCTTTGCTTGATTC
ACAACACTTTGAATCAGCAACGCCCCACCAGAGGGGTTAACATTTCATATTGCTAGATTCACAAC
ACTTCGAATCAGCTA
Found at i:603008 original size:73 final size:72
Alignment explanation
Indices: 602930--603328 Score: 446
Period size: 73 Copynumber: 5.5 Consensus size: 72
602920 CTTCATATCG
* * * * *
602930 CTTGAGATAGTTTCACTTGAAATAAAATTTTATCTCATTCAAGATTGTTTTTCTTAAAACAAACT
1 CTTGAGACAGTTTCCCTTGAAACAAAA-TTTATCTCATTCGAGATTGTTTTTCTTAAAACCAACT
*
602995 TTGTCTCA
65 TCGTCTCA
* * * *
603003 CTTGAGACAGTTTCACTCGAAACAAAAATGTATGTCACTT-GAGA-TGATTTTTCTTAAAACCAA
1 CTTGAGACAGTTTCCCTTGAAAC-AAAATTTATCTCA-TTCGAGATTG-TTTTTCTTAAAACCAA
603066 CTTCGTCTCA
63 CTTCGTCTCA
* * *
603076 CTAGAGACAGTTTCCCTTGAAACAAGAAATTTTATCTCACTCGAGATGGTTTTTCTTAAAACCAA
1 CTTGAGACAGTTTCCCTTGAAAC-A-AAA-TTTATCTCATTCGAGATTGTTTTTCTTAAAACCAA
*
603141 CTTCGTCTCG
63 CTTCGTCTCA
* * *
603151 CTTGAGACAGTTTTCCCTTGAAACAAAATGTATCTCATTTGAGATGGTTTTTCTTAAAACCAACT
1 CTTGAGACAG-TTTCCCTTGAAACAAAATTTATCTCATTCGAGATTGTTTTTCTTAAAACCAACT
* *
603216 TCGTCCCG
65 TCGTCTCA
* * * *
603224 CTTGAGATAATTTTCCCTTGAAACAAAATTTATCTAACTCGAGA-TGATTTTTCTTAAAACCAAC
1 CTTGAGA-CAGTTTCCCTTGAAACAAAATTTATCTCATTCGAGATTG-TTTTTCTTAAAACCAAC
603288 TTCGTCTCA
64 TTCGTCTCA
* **
603297 CTTGAGACA-TTTTCCTCAAAACAAAATTTATC
1 CTTGAGACAGTTTCCCTTGAAACAAAATTTATC
603329 GCACTCGAAA
Statistics
Matches: 282, Mismatches: 34, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
71 20 0.07
72 4 0.01
73 184 0.65
74 14 0.05
75 46 0.16
76 14 0.05
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (72 bp):
CTTGAGACAGTTTCCCTTGAAACAAAATTTATCTCATTCGAGATTGTTTTTCTTAAAACCAACTT
CGTCTCA
Found at i:603231 original size:36 final size:36
Alignment explanation
Indices: 603037--603303 Score: 167
Period size: 36 Copynumber: 7.3 Consensus size: 36
603027 AAAATGTATG
*
603037 TCACTTGAGATGATTTTTCTTAAAACCAACTTCGTC
1 TCACTTGAGATGGTTTTTCTTAAAACCAACTTCGTC
* ** ** ** * **
603073 TCACTAGAGACAGTTTCCCTTGAAACAAGAAATTTTATC
1 TCACTTGAGATGGTTTTTCTT--AA-AACCAACTTCGTC
*
603112 TCACTCGAGATGGTTTTTCTTAAAACCAACTTCGTC
1 TCACTTGAGATGGTTTTTCTTAAAACCAACTTCGTC
* ** * * * * *
603148 TCGCTTGAGACAGTTTTCCCTTGAAACAAAATGT-ATC
1 TCACTTGAGATGGTTTT-TCTTAAAACCAACT-TCGTC
*
603185 TCATTTGAGATGGTTTTTCTTAAAACCAACTTCGTC
1 TCACTTGAGATGGTTTTTCTTAAAACCAACTTCGTC
* * ** * * * * **
603221 CCGCTTGAGATAATTTTCCCTTGAAACAAAATTTATC
1 TCACTTGAGATGGTTTT-TCTTAAAACCAACTTCGTC
* * *
603258 TAACTCGAGATGATTTTTCTTAAAACCAACTTCGTC
1 TCACTTGAGATGGTTTTTCTTAAAACCAACTTCGTC
603294 TCACTTGAGA
1 TCACTTGAGA
603304 CATTTTCCTC
Statistics
Matches: 161, Mismatches: 63, Indels: 14
0.68 0.26 0.06
Matches are distributed among these distances:
35 1 0.01
36 81 0.50
37 52 0.32
38 3 0.02
39 24 0.15
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.36
Consensus pattern (36 bp):
TCACTTGAGATGGTTTTTCTTAAAACCAACTTCGTC
Found at i:603858 original size:139 final size:139
Alignment explanation
Indices: 603608--604141 Score: 705
Period size: 139 Copynumber: 3.8 Consensus size: 139
603598 ATGATGAACC
* * * * * * *
603608 GATCAACATTTCAAATAGAGAGTTCGTAATGAGAAAAACTCATCTGA-CAGAGGAGAAGAAGTTC
1 GATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGA-AGGAGAAGAAGTTC
* * * *
603672 ATAATAAGAAGAACTTGTTCAACCTTAGCTTGATTAATCACATATGGAGTTGTATCAGCAACACC
65 ATAATGAGAAGAACTTGTTCAACCTTAGCTAGATTCATCACATATGGAGTTGAATCAGCAACACC
603737 TCACTCGAGG
130 TCACTCGAGG
* * * * *
603747 GATCAACATTTCCAGTGCATAGTTCAGAATGATAAGAACTCATCTGATGAAGGAGAAGAAGTTCA
1 GATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCA
* *
603812 TAATGAGAAGAATTTGTTCAATCTTAGCTAGATTCATCACATATGGAGTTGAATCAGCAACACCT
66 TAATGAGAAGAACTTGTTCAACCTTAGCTAGATTCATCACATATGGAGTTGAATCAGCAACACCT
603877 CACTCGAGG
131 CACTCGAGG
* *
603886 AATGAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCA
1 GATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCA
* * * *
603951 TAATGCGAAGAACTTGTTCAACCTTAGCTCA-ATTCATCACATATTGAGTTAAATCAGCAACTCC
66 TAATGAGAAGAACTTGTTCAACCTTAGCT-AGATTCATCACATATGGAGTTGAATCAGCAACACC
*
604015 TCATTCGAGG
130 TCACTCGAGG
* * * *
604025 GATCAACATGTCCAGGGGAGAGTTCATAATGAGAAGAACTCATCCGAT-AAGAGAGAAAAAGTTT
1 GATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAG-GAGAAGAAGTTC
* * * * *
604089 ATAATGAGAAAAACTTGTTCAACCTTAGCTTGTTTCCATCGCATAAGGAGTTG
65 ATAATGAGAAGAACTTGTTCAACCTTAGCTAGATT-CATCACATATGGAGTTG
604142 GAACGACACC
Statistics
Matches: 346, Mismatches: 44, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
138 3 0.01
139 328 0.95
140 15 0.04
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (139 bp):
GATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCA
TAATGAGAAGAACTTGTTCAACCTTAGCTAGATTCATCACATATGGAGTTGAATCAGCAACACCT
CACTCGAGG
Found at i:609497 original size:17 final size:17
Alignment explanation
Indices: 609474--609516 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
609464 AACACAAAGT
609474 AATAAAAAAT-AATGTA
1 AATAAAAAATCAATGTA
* *
609490 AATAAAAAGTCAATTTA
1 AATAAAAAATCAATGTA
609507 AATAAAAAAT
1 AATAAAAAAT
609517 GTCAATTGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
AATAAAAAATCAATGTA
Found at i:610911 original size:21 final size:21
Alignment explanation
Indices: 610886--610925 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
610876 TATAATATAA
*
610886 TATATAAATATTTTTAAAAAC
1 TATATAAATATTTTCAAAAAC
*
610907 TATATATATATTTTCAAAA
1 TATATAAATATTTTCAAAA
610926 TGTTTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
TATATAAATATTTTCAAAAAC
Found at i:611217 original size:37 final size:37
Alignment explanation
Indices: 610909--611214 Score: 431
Period size: 37 Copynumber: 8.2 Consensus size: 37
610899 TTAAAAACTA
*
610909 TATATATATTTTCAAAATGTTTTCAAAAACAATATAT
1 TATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* * *
610946 TACATATTTTTTCAAAATATTTTCAAAAACTATATATT
1 TATATATATTTTCAAAATGTTTTCAAAAACTATATA-T
610984 ATATATATATTTTCAAAATGTTTTCAAAAACTATATA-
1 -TATATATATTTTCAAAATGTTTTCAAAAACTATATAT
611021 -ATATATATTTTCAAAATGTTTTCAAAAACTATATAT
1 TATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* *
611057 TATATATATTTTCAAAATATCTTCAAAAACTATATAT
1 TATATATATTTTCAAAATGTTTTCAAAAACTATATAT
* *
611094 TATATATATGCTTTCAAAATGTTTTCAAAGATTATATAT
1 TATATATAT--TTTCAAAATGTTTTCAAAAACTATATAT
*
611133 TATATATATTTTCAAAAT-ATTT-AAAAATCTATATAT
1 TATATATATTTTCAAAATGTTTTCAAAAA-CTATATAT
*
611169 TATATATATGTTTTCAAAACGTTTTCAAAAACTATATAT
1 TATATATA--TTTTCAAAATGTTTTCAAAAACTATATAT
611208 TATATAT
1 TATATAT
611215 GTTATATATA
Statistics
Matches: 240, Mismatches: 18, Indels: 20
0.86 0.06 0.07
Matches are distributed among these distances:
35 39 0.16
36 18 0.08
37 84 0.35
38 10 0.04
39 84 0.35
40 5 0.02
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (37 bp):
TATATATATTTTCAAAATGTTTTCAAAAACTATATAT
Found at i:611975 original size:107 final size:108
Alignment explanation
Indices: 611831--612030 Score: 323
Period size: 107 Copynumber: 1.9 Consensus size: 108
611821 ATACTTCTTC
* *
611831 GTGAAGTTGAAATCGTAGGTGGCTCCTTCACTGTGAAGTTGAGATTTGAATTGGATGTCCTTCGT
1 GTGAAGTTGAAATCGTAGGTGGCTCATTCACTGTGAAGTTGAGATTTGAATGGGATGTCCTTCGT
611896 TGTGAAGTTCAAATCCAATCTTGTAAATTGCATCGTTTTCGTT
66 TGTGAAGTTCAAATCCAATCTTGTAAATTGCATCGTTTTCGTT
* *
611939 GTGAAGTTGAAATTGT-GGTGGCTCATTCGA-TGTGAAGTTGAGCTTTGAATGGGATGTCCTTCG
1 GTGAAGTTGAAATCGTAGGTGGCTCATTC-ACTGTGAAGTTGAGATTTGAATGGGATGTCCTTCG
**
612002 TTGTGAAGTTGGAATCCAATCTTGTAAAT
65 TTGTGAAGTTCAAATCCAATCTTGTAAAT
612031 GAGTTCAATA
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
107 69 0.81
108 16 0.19
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (108 bp):
GTGAAGTTGAAATCGTAGGTGGCTCATTCACTGTGAAGTTGAGATTTGAATGGGATGTCCTTCGT
TGTGAAGTTCAAATCCAATCTTGTAAATTGCATCGTTTTCGTT
Found at i:612546 original size:49 final size:49
Alignment explanation
Indices: 612489--612587 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
612479 AACCATATTT
*
612489 ATTTATAAGGAAAAATGAACAGAGTATATGACAAACATTCTGGAAAGTC
1 ATTTATAAGGAAAAATGAACAAAGTATATGACAAACATTCTGGAAAGTC
612538 ATTTATAAGGAAAAATGAACAAAGTATATGACAAACATTCTGGAAAGTC
1 ATTTATAAGGAAAAATGAACAAAGTATATGACAAACATTCTGGAAAGTC
612587 A
1 A
612588 ATAAAAGAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.24
Consensus pattern (49 bp):
ATTTATAAGGAAAAATGAACAAAGTATATGACAAACATTCTGGAAAGTC
Found at i:613858 original size:35 final size:35
Alignment explanation
Indices: 613818--613888 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
613808 GGATAAAATG
613818 AAGTATTGAATGAAAGAAAATTCAATTCAAAAGAA
1 AAGTATTGAATGAAAGAAAATTCAATTCAAAAGAA
*
613853 AAGTATTGAATGAAAGAAAATTGAATTCAAAAGAA
1 AAGTATTGAATGAAAGAAAATTCAATTCAAAAGAA
613888 A
1 A
613889 TGAAATAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.58, C:0.04, G:0.15, T:0.23
Consensus pattern (35 bp):
AAGTATTGAATGAAAGAAAATTCAATTCAAAAGAA
Found at i:613877 original size:15 final size:15
Alignment explanation
Indices: 613822--613878 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
613812 AAAATGAAGT
613822 ATTGAATGAAAGAAA
1 ATTGAATGAAAGAAA
* *
613837 ATTCAATTCAAAAGAAAA
1 ATTGAA-T-GAAAG-AAA
613855 GTATTGAATGAAAGAAA
1 --ATTGAATGAAAGAAA
613872 ATTGAAT
1 ATTGAAT
613879 TCAAAAGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
15 12 0.36
16 1 0.03
17 7 0.21
18 7 0.21
19 1 0.03
20 5 0.15
ACGTcount: A:0.56, C:0.04, G:0.16, T:0.25
Consensus pattern (15 bp):
ATTGAATGAAAGAAA
Found at i:613887 original size:17 final size:17
Alignment explanation
Indices: 613830--613888 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
613820 GTATTGAATG
*
613830 AAAGAAAATTCAATTCA
1 AAAGAAAATTGAATTCA
*
613847 AAAGAAAAGTATTGAA-T-G
1 AAAG-AAA--ATTGAATTCA
613865 AAAGAAAATTGAATTCA
1 AAAGAAAATTGAATTCA
613882 AAAGAAA
1 AAAGAAA
613889 TGAAATAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
15 6 0.18
16 1 0.03
17 14 0.41
18 7 0.21
19 1 0.03
20 5 0.15
ACGTcount: A:0.61, C:0.05, G:0.14, T:0.20
Consensus pattern (17 bp):
AAAGAAAATTGAATTCA
Found at i:620737 original size:16 final size:17
Alignment explanation
Indices: 620718--620764 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
620708 AACACAAAGT
620718 AATAAAAAATAATGT-A
1 AATAAAAAATAATGTAA
*
620734 AATAAAAAGTCAAT-TAA
1 AATAAAAAAT-AATGTAA
620751 AATAAAAAA-AATGT
1 AATAAAAAATAATGT
620765 CAATTGCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 3 0.12
16 11 0.42
17 12 0.46
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.23
Consensus pattern (17 bp):
AATAAAAAATAATGTAA
Found at i:622196 original size:24 final size:21
Alignment explanation
Indices: 622154--622196 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
622144 TATAATATAA
622154 TATATAAATATTTTTAAAAAC
1 TATATAAATATTTTTAAAAAC
*
622175 TATATAATATATATTTTCAAAA
1 TATATAA-ATAT-TTTTAAAAA
622197 TGTTTTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 4 0.21
23 8 0.42
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
TATATAAATATTTTTAAAAAC
Found at i:622252 original size:38 final size:35
Alignment explanation
Indices: 622159--622261 Score: 107
Period size: 38 Copynumber: 2.9 Consensus size: 35
622149 TATAATATAT
* *
622159 AAATATTTTTAAAAACTATATAATATATATTTTCA
1 AAATATTTTCAAAAACTATATAACATATATTTTCA
* * *
622194 AAATGTTTTCAAAAAATATATATTACATATTTTTTTCA
1 AAATATTTTCAAAAACTATATA--ACATA-TATTTTCA
* * *
622232 AAATATTTTCAAAATCTATATTATATATAT
1 AAATATTTTCAAAAACTATATAACATATAT
622262 ATATATATAT
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
35 21 0.39
36 4 0.07
37 4 0.07
38 25 0.46
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.47
Consensus pattern (35 bp):
AAATATTTTCAAAAACTATATAACATATATTTTCA
Found at i:622260 original size:2 final size:2
Alignment explanation
Indices: 622248--622283 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
622238 TTTCAAAATC
622248 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
622284 TAAAAATGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:622334 original size:128 final size:124
Alignment explanation
Indices: 622138--622404 Score: 308
Period size: 128 Copynumber: 2.1 Consensus size: 124
622128 AATAAAAATA
* * ***
622138 ATATACTATA-ATATA-ATATATAAATATTTTTAAAAACTATATAATATATATTTTCAAAATGTT
1 ATATA-TATATATATATATATATAAAAATTTTTAAAAACTATATAATAGATATTTTCAAAATAAA
* * * *
622201 TTCAAAAAATATATATTACATAT-TTTTTTCAAAATATTTTCAAAATCTATATTATATATAT
65 ATCAAAAAATATATATTACATATATGTTTTCAAAACATTTTCAAAAACTATA-TAT-TATAT
622262 ATATATATATATATATATATATTAAAAATGTTTTCAAAAACTATATAATAGATATTTTCGAAAA-
1 ATATATATATATATATATATA-TAAAAAT-TTTT-AAAAACTATATAATAGATATTTTC-AAAAT
* * *
622326 AAAATCAAAAACTATATATTATATATATGTTTTCAAAACGTTTTCAAAAACTATATATTATAT
62 AAAATCAAAAAATATATATTACATATATGTTTTCAAAACATTTTCAAAAACTATATATTATAT
* * *
622389 ATGTTTTTATATATAT
1 ATATATATATATATAT
622405 TAAATAGCAC
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
123 4 0.03
124 10 0.08
125 5 0.04
126 6 0.05
127 22 0.18
128 46 0.38
129 28 0.23
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (124 bp):
ATATATATATATATATATATATAAAAATTTTTAAAAACTATATAATAGATATTTTCAAAATAAAA
TCAAAAAATATATATTACATATATGTTTTCAAAACATTTTCAAAAACTATATATTATAT
Found at i:622390 original size:37 final size:37
Alignment explanation
Indices: 622265--622395 Score: 117
Period size: 39 Copynumber: 3.5 Consensus size: 37
622255 TATATATATA
* *
622265 TATATATATATATATATATTAAAAATGTTTTCAAAAAC
1 TATATATATATATATATTTTCAAAA-GTTTTCAAAAAC
* ****
622303 --TATATA-ATAGATATTTTCGAAAAAAAATCAAAAAC
1 TATATATATATATATATTTTC-AAAAGTTTTCAAAAAC
*
622338 TATATATTATATATATGTTTTCAAAACGTTTTCAAAAAC
1 TATATA-TATATATATATTTTCAAAA-GTTTTCAAAAAC
*
622377 TATATAT-TATATATGTTTT
1 TATATATATATATATATTTT
622396 TATATATATT
Statistics
Matches: 74, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
35 17 0.23
36 10 0.14
37 16 0.22
38 7 0.09
39 24 0.32
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (37 bp):
TATATATATATATATATTTTCAAAAGTTTTCAAAAAC
Found at i:624796 original size:17 final size:17
Alignment explanation
Indices: 624774--624820 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
624764 GTATTTGAAC
* *
624774 CCAAGATTATTTAGTAA
1 CCAAGATCAATTAGTAA
624791 CCAAGATCAATTAGTAA
1 CCAAGATCAATTAGTAA
*
624808 TCAAGATCAATTA
1 CCAAGATCAATTA
624821 AAATATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.30
Consensus pattern (17 bp):
CCAAGATCAATTAGTAA
Found at i:624841 original size:7 final size:7
Alignment explanation
Indices: 624823--624855 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
624813 ATCAATTAAA
624823 ATATATTT
1 ATATA-TT
624831 ATATATT
1 ATATATT
624838 ATATATT
1 ATATATT
624845 ATATATT
1 ATATATT
624852 ATAT
1 ATAT
624856 TTAATGATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.80
8 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
ATATATT
Found at i:624991 original size:28 final size:28
Alignment explanation
Indices: 624944--625007 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 28
624934 AAAAATCTAA
624944 TATATTATTTATAATTAATTTA-TGATTT
1 TATATT-TTTATAATTAATTTATTGATTT
*
624972 TAATATTTTTA-AATTAAATTTATTTATTT
1 T-ATATTTTTATAATT-AATTTATTGATTT
625001 TATATTT
1 TATATTT
625008 ATTTATTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 4 0.12
28 17 0.53
29 11 0.34
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (28 bp):
TATATTTTTATAATTAATTTATTGATTT
Found at i:625339 original size:2 final size:2
Alignment explanation
Indices: 625334--625413 Score: 153
Period size: 2 Copynumber: 40.5 Consensus size: 2
625324 TCATTAACTA
625334 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
625376 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
625414 ATTGATTTCT
Statistics
Matches: 77, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 76 0.99
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:632389 original size:40 final size:42
Alignment explanation
Indices: 632326--632431 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 42
632316 CTTAGCAGTG
* * *
632326 TTTTTGTAATAAACGCCACAATAGTTATGTACTTTAGT-G-A
1 TTTTTGTAATAAACGCCGCAATAGTCATGTACATTAGTGGTA
* * * *
632366 TTTTTTTTATAAACGCCGTAATAGTCATTTACATTAGTGGTA
1 TTTTTGTAATAAACGCCGCAATAGTCATGTACATTAGTGGTA
*
632408 TTTTTGTAATAAACACCGCAATAG
1 TTTTTGTAATAAACGCCGCAATAG
632432 CGTTTTTACA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 31 0.58
41 1 0.02
42 21 0.40
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (42 bp):
TTTTTGTAATAAACGCCGCAATAGTCATGTACATTAGTGGTA
Found at i:633510 original size:29 final size:29
Alignment explanation
Indices: 633446--633510 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
633436 CGTTATTTAT
*
633446 TTCTAACTACTAATTTTTCTTTTATTGCA
1 TTCTAACTACTAATTTTACTTTTATTGCA
*
633475 TAT-TAACTACTGACTTTTAC-TTTATTGCA
1 T-TCTAACTACT-AATTTTACTTTTATTGCA
633504 TTCTAAC
1 TTCTAAC
633511 CATTGTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
29 23 0.74
30 7 0.23
ACGTcount: A:0.26, C:0.18, G:0.05, T:0.51
Consensus pattern (29 bp):
TTCTAACTACTAATTTTACTTTTATTGCA
Found at i:633712 original size:130 final size:129
Alignment explanation
Indices: 633478--633866 Score: 497
Period size: 130 Copynumber: 3.0 Consensus size: 129
633468 TATTGCATAT
* * * *
633478 TAACTACTGACTTTTACTTTATTGCATTCTAACCATTGTTTATTTATTTATTTATGGTTTCTATT
1 TAACTATTAACTTTTATTTTATTGCATTCTAACCATTG-TTATTTATTTATTTAT-GTTTCTAAT
* * **
633543 TTTCGATTCGACCTTGTGGTGACCAGATCCGGGGTATGATCTGCATTATTATGGTTCGGACTCTG
64 ATTCGATTCGACCTTGTGGTGACCAGATCTGGGGTATGATCCACATTATTATGGTTCGGACTCTG
633608 C
129 C
*
633609 TAACTATTAACTTTTATTTTATTGCACTT-TAATCATTGTTATTTATTTATTTATTGTTTCTAAT
1 TAACTATTAACTTTTATTTTATTGCA-TTCTAACCATTGTTATTTATTTATTTA-TGTTTCTAAT
*
633673 ATTCGATTCGACCTTGTGGTGACTC-GATCTAGGGTATGATCCACATTATTATGGTT-GAGACTC
64 ATTCGATTCGACCTTGTGGTGAC-CAGATCTGGGGTATGATCCACATTATTATGGTTCG-GACTC
**
633736 AAC
127 TGC
*
633739 TAACTATTTACTTTTATTTTATTGCATTCTAACCATTG---TTTATTTATTTA--TTTCTAATAT
1 TAACTATTAACTTTTATTTTATTGCATTCTAACCATTGTTATTTATTTATTTATGTTTCTAATAT
** * * * *
633799 TTAATTCTACCTTGTAGTGACCTGATTTGGGGTATGATCCACATTATTATGGTTCGGACTCTGC
66 TCGATTCGACCTTGTGGTGACCAGATCTGGGGTATGATCCACATTATTATGGTTCGGACTCTGC
633863 TAAC
1 TAAC
633867 CGCTAACTTG
Statistics
Matches: 229, Mismatches: 22, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
123 1 0.00
124 66 0.29
125 1 0.00
127 12 0.05
129 3 0.01
130 111 0.48
131 33 0.14
132 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.15, T:0.46
Consensus pattern (129 bp):
TAACTATTAACTTTTATTTTATTGCATTCTAACCATTGTTATTTATTTATTTATGTTTCTAATAT
TCGATTCGACCTTGTGGTGACCAGATCTGGGGTATGATCCACATTATTATGGTTCGGACTCTGC
Found at i:634106 original size:32 final size:33
Alignment explanation
Indices: 634070--634139 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 33
634060 TTCCATTTAA
* * * *
634070 CTTTATGTACTTTTA-AATTTATATTTTTTTTT
1 CTTTATGTAATTTTAGAATTTACATTTTATTTG
* *
634102 CTTTATTTAATTTTAGTATTTACATTTTATTTG
1 CTTTATGTAATTTTAGAATTTACATTTTATTTG
634135 CTTTA
1 CTTTA
634140 ATGTTCTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.23, C:0.07, G:0.04, T:0.66
Consensus pattern (33 bp):
CTTTATGTAATTTTAGAATTTACATTTTATTTG
Found at i:640583 original size:36 final size:37
Alignment explanation
Indices: 640495--640603 Score: 107
Period size: 36 Copynumber: 2.9 Consensus size: 37
640485 CTTTGAGATT
* * **
640495 GTTTCTCTCGAAACAAAGTGTCATCTCG-TTAGAGACAA
1 GTTTCTCTCAAAACAAACT-TTGTCTCGCTT-GAGACAA
*
640533 GTTTTCTCTAAAAACAAA-TATTGTCTCGCTTGAGAC-A
1 G-TTTCTCTCAAAACAAACT-TTGTCTCGCTTGAGACAA
*
640570 GTTTCTCTCAAAACAAACTTTGTCTCACTTGAGA
1 GTTTCTCTCAAAACAAACTTTGTCTCGCTTGAGA
640604 TAGTCTTTCT
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
36 29 0.48
37 3 0.05
38 13 0.21
39 16 0.26
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (37 bp):
GTTTCTCTCAAAACAAACTTTGTCTCGCTTGAGACAA
Found at i:640704 original size:36 final size:36
Alignment explanation
Indices: 640647--640838 Score: 106
Period size: 36 Copynumber: 5.7 Consensus size: 36
640637 TTTTTCCTCA
* *
640647 AAACAAATTCCATCTCT-TTGAGATTGTTTCCCTTG
1 AAACAAATTTCGTCTCTCTTGAGATTGTTTCCCTTG
** * *
640682 AAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTCG
1 AAACAAATTTCGTCTCTCTTGAGATTGTTTCCCTTG
*** * *
640718 AAACATAA-----AAAC-ATTGAGATTGTTTTCCTTG
1 AAACA-AATTTCGTCTCTCTTGAGATTGTTTCCCTTG
** *
640749 AAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAATTTCGTCTCTCTTGAGATTGTTTCCCTTG
* *
640785 AAACATAA------ATCT-TTGAGATTATTTCCCTTG
1 AAACA-AATTTCGTCTCTCTTGAGATTGTTTCCCTTG
* *
640815 AAACAAATTTTGTTTCTCTTGAGA
1 AAACAAATTTCGTCTCTCTTGAGA
640839 CAATTTATAT
Statistics
Matches: 112, Mismatches: 29, Indels: 31
0.65 0.17 0.18
Matches are distributed among these distances:
29 2 0.02
30 21 0.19
31 21 0.19
32 1 0.01
35 19 0.17
36 44 0.39
37 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (36 bp):
AAACAAATTTCGTCTCTCTTGAGATTGTTTCCCTTG
Found at i:640772 original size:67 final size:67
Alignment explanation
Indices: 640664--640922 Score: 367
Period size: 67 Copynumber: 3.9 Consensus size: 67
640654 TTCCATCTCT
640664 TTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTCGAAACATAAAAA
1 TTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTCGAAACATAAAAA
640729 CA
66 CA
* * *
640731 TTGAGATTGTTTTCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAT-AAAT
1 TTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTCGAAACATAAAAA
*
640795 CT
66 CA
* * * * * *
640797 TTGAGATTATTTCCCTTGAAACAAATTTTGTTTCTCTTGAGACAATTTATATCGAAACATAAAAA
1 TTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTCGAAACATAAAAA
640862 CA
66 CA
* * * * * *
640864 TTGAGATTGTTTCTCTTGGAACAAGTTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTCGAAACA
640923 AATTATCCCT
Statistics
Matches: 167, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
66 56 0.34
67 111 0.66
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (67 bp):
TTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTCGAAACATAAAAA
CA
Found at i:640833 original size:133 final size:133
Alignment explanation
Indices: 640661--640922 Score: 418
Period size: 133 Copynumber: 2.0 Consensus size: 133
640651 AAATTCCATC
* * * *
640661 TCTTTGAGATTGTTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTCGAAACATAA
1 TCTTTGAGATTATTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAATTTATATCGAAACATAA
*
640726 AAACATTGAGATTGTTT-TCCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACA
66 AAACATTGAGATTGTTTCT-CTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACA
640790 TAAA
130 TAAA
* *
640794 TCTTTGAGATTATTTCCCTTGAAACAAATTTTGTTTCTCTTGAGACAATTTATATCGAAACATAA
1 TCTTTGAGATTATTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAATTTATATCGAAACATAA
* * *
640859 AAACATTGAGATTGTTTCTCTTGGAACAAGTTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
66 AAACATTGAGATTGTTTCTCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACA
640923 AATTATCCCT
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
133 117 0.99
134 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (133 bp):
TCTTTGAGATTATTTCCCTTGAAACAAATTTCGTCTCTCTTGAGACAATTTATATCGAAACATAA
AAACATTGAGATTGTTTCTCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACAT
AAA
Found at i:641170 original size:137 final size:137
Alignment explanation
Indices: 640924--641335 Score: 420
Period size: 137 Copynumber: 3.0 Consensus size: 137
640914 CTTGAAACAA
** * * * * *
640924 ATTATCCCTAAAGATGGCCAAATTTCCTCATCAGGTAGGAACAATGTCATCCACTGAGCAGATCT
1 ATTATCCCTAAAGATGGCCAAACGTCCTCATCACGTAGGAACAGTGTCATCCACTCAACAAATCT
* * * **
640989 CCTCATCACGTAGAAGTAGTGTCACCCTTAGATAACCAGACTTCCTCATCATGTAGGAATTGCGT
66 CCTCATCACGTAGAAGTACTGTCACCCTTAGATAACCAAACTTCCTCATCACGTAGGAACCGCGT
641054 TATCTCC
131 TATCTCC
* *
641061 ATTATCCCTAATGATGACCAAACGTCCTCATCACGTAGGAACAGTGTCATCCAC-CAACAAAATC
1 ATTATCCCTAAAGATGGCCAAACGTCCTCATCACGTAGGAACAGTGTCATCCACTCAAC-AAATC
* * * *
641125 TCCTCGTCACGTAGGAGTCACT-TCACCCTTAGATAGCCAAACTTCCTCATCACGTAGGAACCGT
65 TCCTCATCACGTAGAAGT-ACTGTCACCCTTAGATAACCAAACTTCCTCATCACGTAGGAACCGC
*
641189 GTTATCTCT
129 GTTATCTCC
* * * * * *
641198 ATTATCCCTAAAGATGGCCAGACGTCCT-ATTCACGTAGGAATAGTTTCATCTAC-CGACCATAT
1 ATTATCCCTAAAGATGGCCAAACGTCCTCA-TCACGTAGGAACAGTGTCATCCACTC-AACAAAT
* * * * * * * * *
641261 CTCTTCATTACATAGGAGCAGC-GTCACCTTTAGATAACCAGATTTCCTCATCACATAGGAACCG
64 CTCCTCATCACGTAGAAGTA-CTGTCACCCTTAGATAACCAAACTTCCTCATCACGTAGGAACCG
* *
641325 TGTTGTCTCC
128 CGTTATCTCC
641335 A
1 A
641336 AAATTACCTA
Statistics
Matches: 230, Mismatches: 39, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
136 4 0.02
137 222 0.97
138 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (137 bp):
ATTATCCCTAAAGATGGCCAAACGTCCTCATCACGTAGGAACAGTGTCATCCACTCAACAAATCT
CCTCATCACGTAGAAGTACTGTCACCCTTAGATAACCAAACTTCCTCATCACGTAGGAACCGCGT
TATCTCC
Found at i:641575 original size:122 final size:122
Alignment explanation
Indices: 641355--641691 Score: 435
Period size: 122 Copynumber: 2.8 Consensus size: 122
641345 AAAAATGACT
* * * * * *
641355 AGAACTCTTCATCGTGGATGAGCAGTGTCGTCTTCAATAACAAAATTATCTCCAGATTGACCCGA
1 AGAACTCTTCAACATGTATGAGCAGTGTAGTCTTCAA-CACCAAATTATCTCCAGATTGACCCGA
* * * **
641420 CTTCCTCAACGAGAATGAATAGTGTCATCTTCAGTAAACAATTTACTTGAAAAC-GGC
65 CTTCCTCAACGAGAAGGAATAGTGTCATCTTCAGCAAACAATTTACCTGAAAACAACC
* * *
641477 TGTAACTCTTCAACATGTATGAGCAGTGTAGTCTTCAACACCAAATTATCTCAAGATTGACTCGA
1 AG-AACTCTTCAACATGTATGAGCAGTGTAGTCTTCAACACCAAATTATCTCCAGATTGACCCGA
*
641542 CTTCCTCAACGAGAAGGAATAGTGTCATCTTCAGCAAACAATTTACCTGAAAGCAACC
65 CTTCCTCAACGAGAAGGAATAGTGTCATCTTCAGCAAACAATTTACCTGAAAACAACC
* * * *
641600 AGAACTCTTCAACATGTATCAGTAATGTTGTCTTCAACACCAAATTATCTCCAGATTGACCCGAC
1 AGAACTCTTCAACATGTATGAGCAGTGTAGTCTTCAACACCAAATTATCTCCAGATTGACCCGAC
* * *
641665 ATCCTCAAC-ATGAAGGAACAATGTCAT
66 TTCCTCAACGA-GAAGGAATAGTGTCAT
641692 TTTTAAATCC
Statistics
Matches: 187, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
121 1 0.01
122 153 0.82
123 33 0.18
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (122 bp):
AGAACTCTTCAACATGTATGAGCAGTGTAGTCTTCAACACCAAATTATCTCCAGATTGACCCGAC
TTCCTCAACGAGAAGGAATAGTGTCATCTTCAGCAAACAATTTACCTGAAAACAACC
Found at i:642671 original size:29 final size:29
Alignment explanation
Indices: 642607--642671 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
642597 TGTTATTTAT
*
642607 TTCTAACTATTAACTTTTATTTTATTGCA
1 TTCTAACTACTAACTTTTATTTTATTGCA
*
642636 TAT-TAACTACTGACTTTTATTTTATTGCA
1 T-TCTAACTACTAACTTTTATTTTATTGCA
642665 TTCTAAC
1 TTCTAAC
642672 CATTGTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 1 0.03
29 30 0.94
30 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.52
Consensus pattern (29 bp):
TTCTAACTACTAACTTTTATTTTATTGCA
Found at i:642852 original size:130 final size:128
Alignment explanation
Indices: 642639--643041 Score: 481
Period size: 130 Copynumber: 3.1 Consensus size: 128
642629 TATTGCATAT
* * *
642639 TAACTACTGACTTTTATTTTATTGCATTCTAACCATTGTTTATTTATTTATTTATGGTTTCTATT
1 TAACTACTAACTTTTATTTTATTGCATTCTAACCATT-TTTATTTATTTATTTATTGTTTCTAAT
* * * **
642704 TTTCGATTTGACCTTGTGGTGACCAGATCTTGGGTATGATCCGCATTATTATGGTTCATACTCTG
65 ATTCGATTCGACCTTGTGGTGACC-GATC-TGGGTATGATCCACATTATTATGGTTCGGACTCTG
*
642769 T
128 C
**
642770 TAACTACTAACTTTTATTTTATCACACTT-TAACCATTTTTATTTATTTATTTATTGTTTCTAAT
1 TAACTACTAACTTTTATTTTATTGCA-TTCTAACCATTTTTATTTATTTATTTATTGTTTCTAAT
* * * * * *
642834 ATTCAATTCGACCTTGTGGTGACTCGATCCGGGGTATGATCCTCATTATTATTGTTCGGAGTCTA
65 ATTCGATTCGACCTTGTGGTGAC-CGAT-CTGGGTATGATCCACATTATTATGGTTCGGACTCTG
642899 C
128 C
* * * *
642900 TAACTACTGACTTTTATTTTATTGCATTCTAACCA---TTATTTATTTATTTATTATTTATAATG
1 TAACTACTAACTTTTATTTTATTGCATTCTAACCATTTTTATTTATTTATTTATTGTTTCTAATA
* *
642962 TTTGATTCGACCTTGTGGTGACCCGATCTGAGGTATGATCCACATTATTATGATTCGGACTCTGC
66 TTCGATTCGACCTTGTGGTGA-CCGATCTG-GGTATGATCCACATTATTATGGTTCGGACTCTGC
**
643027 TAACCGCTAACTTTT
1 TAACTACTAACTTTT
643042 CTAACAACTA
Statistics
Matches: 233, Mismatches: 33, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
126 2 0.01
127 88 0.38
128 1 0.00
129 2 0.01
130 105 0.45
131 33 0.14
132 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (128 bp):
TAACTACTAACTTTTATTTTATTGCATTCTAACCATTTTTATTTATTTATTTATTGTTTCTAATA
TTCGATTCGACCTTGTGGTGACCGATCTGGGTATGATCCACATTATTATGGTTCGGACTCTGC
Found at i:642999 original size:127 final size:125
Alignment explanation
Indices: 642639--643030 Score: 437
Period size: 127 Copynumber: 3.0 Consensus size: 125
642629 TATTGCATAT
* * *
642639 TAACTACTGACTTTTATTTTATTGCATTCTAACCATTGTTTATTTATTTATTTATGGTTTCTATT
1 TAACTACTGACTTTTATTTTATTGCATTCTAACCATTATTTATTTATTTA-TTAT--TTT-AATA
* * * * **
642704 TTTCGATTTGACCTTGTGGTGACCAGATCTTGGGTATGATCCGCATTATTATGGTTCATACTCTG
62 TTT-GATTCGACCTTGTGGTGACCCGATC-TGGGTATGATCCACATTATTATTGTTCGGACTCTG
*
642769 T
125 C
* ** *
642770 TAACTACTAACTTTTATTTTATCACACTT-TAACCATTTTTATTTATTTATTTATTGTTTCTAAT
1 TAACTACTGACTTTTATTTTATTGCA-TTCTAACCA---TTATTTATTTATTTATTATTT-TAAT
** * * * * *
642834 ATTCAATTCGACCTTGTGGTGACTCGATCCGGGGTATGATCCTCATTATTATTGTTCGGAGTCTA
61 ATTTGATTCGACCTTGTGGTGACCCGAT-CTGGGTATGATCCACATTATTATTGTTCGGACTCTG
642899 C
125 C
*
642900 TAACTACTGACTTTTATTTTATTGCATTCTAACCATTATTTATTTATTTATTATTTATAATGTTT
1 TAACTACTGACTTTTATTTTATTGCATTCTAACCATTATTTATTTATTTATTATTT-TAATATTT
642965 GATTCGACCTTGTGGTGACCCGATCTGAGGTATGATCCACATTATTA-TGATTCGGACTCTGC
65 GATTCGACCTTGTGGTGACCCGATCTG-GGTATGATCCACATTATTATTG-TTCGGACTCTGC
643027 TAAC
1 TAAC
643031 CGCTAACTTT
Statistics
Matches: 219, Mismatches: 33, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
126 4 0.02
127 80 0.37
129 2 0.01
130 77 0.35
131 36 0.16
132 3 0.01
133 3 0.01
134 14 0.06
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (125 bp):
TAACTACTGACTTTTATTTTATTGCATTCTAACCATTATTTATTTATTTATTATTTTAATATTTG
ATTCGACCTTGTGGTGACCCGATCTGGGTATGATCCACATTATTATTGTTCGGACTCTGC
Found at i:643068 original size:16 final size:16
Alignment explanation
Indices: 643026--643068 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
643016 TCGGACTCTG
*
643026 CTAACCGCTAACTTTT
1 CTAACCGCTAACATTT
**
643042 CTAACAACTAACATTT
1 CTAACCGCTAACATTT
643058 CTAACCGCTAA
1 CTAACCGCTAA
643069 TTACTAATTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.35, C:0.30, G:0.05, T:0.30
Consensus pattern (16 bp):
CTAACCGCTAACATTT
Found at i:645884 original size:3 final size:3
Alignment explanation
Indices: 645878--645946 Score: 77
Period size: 3 Copynumber: 22.7 Consensus size: 3
645868 TTCATTTGAA
*
645878 TAT TAT T-T ATAT TTT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
645923 TAT ATAT TTT TAT CAT TGT TAT TA
1 TAT -TAT TAT TAT TAT TAT TAT TA
645947 AATAATTACA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
2 1 0.02
3 50 0.91
4 4 0.07
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:647300 original size:2 final size:2
Alignment explanation
Indices: 647293--647326 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
647283 TGAACCATTG
647293 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
647327 GTGTGTGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:647331 original size:2 final size:2
Alignment explanation
Indices: 647326--647359 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
647316 TATATATATA
647326 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
647360 AACGTAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:648328 original size:23 final size:23
Alignment explanation
Indices: 648302--648345 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
648292 ATGGCACTTT
*
648302 GGTGCATTTCTACGCGGCACTAC
1 GGTGCAATTCTACGCGGCACTAC
*
648325 GGTGCAATTCTACGTGGCACT
1 GGTGCAATTCTACGCGGCACT
648346 TCGATGTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGTGCAATTCTACGCGGCACTAC
Found at i:651932 original size:19 final size:19
Alignment explanation
Indices: 651908--651945 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
651898 AGAAATTCAT
651908 TGAAGATTAA-GCAATGAAA
1 TGAAGATTAATG-AATGAAA
651927 TGAAGATTAATGAATGAAA
1 TGAAGATTAATGAATGAAA
651946 CAGTTCAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.53, C:0.03, G:0.21, T:0.24
Consensus pattern (19 bp):
TGAAGATTAATGAATGAAA
Found at i:663276 original size:31 final size:32
Alignment explanation
Indices: 663216--663288 Score: 112
Period size: 31 Copynumber: 2.3 Consensus size: 32
663206 AAAAAATAAT
* *
663216 ATATGATCACTTTCGTTTTTATTTTAATTAAG
1 ATATGGTCACTTTCGTATTTATTTTAATTAAG
663248 ATATGGTCACTTTCGTATTTA-TTTAATTAAG
1 ATATGGTCACTTTCGTATTTATTTTAATTAAG
*
663279 ATGTGGTCAC
1 ATATGGTCAC
663289 CACATGTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
31 19 0.50
32 19 0.50
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (32 bp):
ATATGGTCACTTTCGTATTTATTTTAATTAAG
Found at i:663956 original size:21 final size:21
Alignment explanation
Indices: 663932--663972 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
663922 AAAAGATTAT
*
663932 CTAAAATATT-ATTATTTTTAC
1 CTAAAACATTAATT-TTTTTAC
663953 CTAAAACATTAATTTTTTTA
1 CTAAAACATTAATTTTTTTA
663973 ATATTTCTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (21 bp):
CTAAAACATTAATTTTTTTAC
Found at i:664340 original size:31 final size:32
Alignment explanation
Indices: 664276--664343 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
664266 TTCTTTCTTG
*
664276 TTCACCGTCTGTGGCAACAACATCTCCATTCT
1 TTCACCGTCGGTGGCAACAACATCTCCATTCT
* *
664308 TTCATCGTCGGTGGCAGCAACA-CAT-CATTCT
1 TTCACCGTCGGTGGCAACAACATC-TCCATTCT
664339 TTCAC
1 TTCAC
664344 TATTGATGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
31 11 0.35
32 20 0.65
ACGTcount: A:0.22, C:0.32, G:0.15, T:0.31
Consensus pattern (32 bp):
TTCACCGTCGGTGGCAACAACATCTCCATTCT
Found at i:672456 original size:299 final size:299
Alignment explanation
Indices: 671918--672521 Score: 1183
Period size: 299 Copynumber: 2.0 Consensus size: 299
671908 ACCATATGCA
671918 ACTATATTCTCCTAAATGCATCTGTATGATCTTATATGAGCTCTTAGACACTCAATAACTTAAGT
1 ACTATATTCTCCTAAATGCATCTGTATGATCTTATATGAGCTCTTAGACACTCAATAACTTAAGT
671983 GAAAATGTCTTAAATATGGCATTTTCACAGAGTTATCAGGTATCGATACTGGAATTATTTTGAAA
66 GAAAATGTCTTAAATATGGCATTTTCACAGAGTTATCAGGTATCGATACTGGAATTATTTTGAAA
672048 CATCAAAGCTGATTTTGGTATCAATACTCGAGGTAGTATCGGTACCAAGGACAGTATCGATACTG
131 CATCAAAGCTGATTTTGGTATCAATACTCGAGGTAGTATCGGTACCAAGGACAGTATCGATACTG
672113 ACAAACCTAGTATCGGTATTGTCATCCTGATTTGGGCAAAAAAGTTCATTAAGTTTGTAAGCTTA
196 ACAAACCTAGTATCGGTATTGTCATCCTGATTTGGGCAAAAAAGTTCATTAAGTTTGTAAGCTTA
672178 AAATAGGGGTTATGAGGGCATCAAGATTTCTTTAATAAG
261 AAATAGGGGTTATGAGGGCATCAAGATTTCTTTAATAAG
672217 ACTATATTCTCCTAAATGCATCTGTATGATCTTATATGAGCTCTTAGACACTCAATAACTTAAGT
1 ACTATATTCTCCTAAATGCATCTGTATGATCTTATATGAGCTCTTAGACACTCAATAACTTAAGT
672282 GAAAATGTCTTAAATATGGCATTTTCACAGAGTTATCAGGTATCGATACTGGAATTATTTTGAAA
66 GAAAATGTCTTAAATATGGCATTTTCACAGAGTTATCAGGTATCGATACTGGAATTATTTTGAAA
672347 CATCAAAGCTGATTTTGGTATCAATACTCGAGGTAGTATCGGTACCACAGGACAGTATCGATACT
131 CATCAAAGCTGATTTTGGTATCAATACTCGAGGTAGTATCGGTACCA-AGGACAGTATCGATACT
672412 GACAAACCTAGTATCGGTATTG-CATCCTGATTTGGGCAAAAAAGTTCATTAAGTTTGTAAGCTT
195 GACAAACCTAGTATCGGTATTGTCATCCTGATTTGGGCAAAAAAGTTCATTAAGTTTGTAAGCTT
*
672476 AAAATAGGGGTTATGTGGGCATCAAGATTTCTTTAATAAG
260 AAAATAGGGGTTATGAGGGCATCAAGATTTCTTTAATAAG
672516 ACTATA
1 ACTATA
672522 AGTGAGAATA
Statistics
Matches: 303, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
299 264 0.87
300 39 0.13
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (299 bp):
ACTATATTCTCCTAAATGCATCTGTATGATCTTATATGAGCTCTTAGACACTCAATAACTTAAGT
GAAAATGTCTTAAATATGGCATTTTCACAGAGTTATCAGGTATCGATACTGGAATTATTTTGAAA
CATCAAAGCTGATTTTGGTATCAATACTCGAGGTAGTATCGGTACCAAGGACAGTATCGATACTG
ACAAACCTAGTATCGGTATTGTCATCCTGATTTGGGCAAAAAAGTTCATTAAGTTTGTAAGCTTA
AAATAGGGGTTATGAGGGCATCAAGATTTCTTTAATAAG
Found at i:678039 original size:20 final size:20
Alignment explanation
Indices: 678010--678048 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
678000 AGAGCTCATA
*
678010 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
678030 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
678049 GTGGTGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:686573 original size:20 final size:20
Alignment explanation
Indices: 686544--686582 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
686534 AGAGATCATA
*
686544 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
686564 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
686583 GTGGTGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:688483 original size:18 final size:18
Alignment explanation
Indices: 688435--688485 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
688425 ACACTTTGTC
*
688435 TTCTT-CTCCTTCATCTT
1 TTCTTCCTCCTTCCTCTT
688452 TTCTTCCTCCTTCCTCTT
1 TTCTTCCTCCTTCCTCTT
*
688470 TTCTTCCTCATTCCTC
1 TTCTTCCTCCTTCCTC
688486 CTCTCTCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 5 0.16
18 26 0.84
ACGTcount: A:0.04, C:0.41, G:0.00, T:0.55
Consensus pattern (18 bp):
TTCTTCCTCCTTCCTCTT
Found at i:690006 original size:20 final size:21
Alignment explanation
Indices: 689970--690008 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
689960 AATGTTCAAG
689970 TATCGATACTAGGATGAATAA
1 TATCGATACTAGGATGAATAA
689991 TATCGATACT-GGATGAAT
1 TATCGATACTAGGATGAAT
690009 TAGGGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (21 bp):
TATCGATACTAGGATGAATAA
Found at i:690735 original size:14 final size:14
Alignment explanation
Indices: 690716--690745 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
690706 GAGTATCGAT
690716 ACTCTAAACCTTAA
1 ACTCTAAACCTTAA
*
690730 ACTCTAAATCTTAA
1 ACTCTAAACCTTAA
690744 AC
1 AC
690746 CCCAAAAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.30
Consensus pattern (14 bp):
ACTCTAAACCTTAA
Found at i:690767 original size:669 final size:665
Alignment explanation
Indices: 689408--691323 Score: 2925
Period size: 669 Copynumber: 2.9 Consensus size: 665
689398 TGAGGAAGGT
* * *
689408 CCAAAAGCATAATTACCCCATTTTAGAGGATAAGAGGTTTTATATCTCTTATTTCATTTTCTTCC
1 CCAAAAGCATAATTA-CCCATTTTAGAGGATGAGAGGTTTTATATCTCTCATTTCATTTTTTTCC
* * *
689473 TTTTATTTCCATTTCTTCATTCTTCCTTCTCAAACTCCATAAG-AAAAAGGTGAGTCCTCTGAAC
65 TTTTATTTCCATTTCTTCCTTCTTCCTTCTCAAACTCCATAAGCCAAAA-GTGAGTCCTCTAAAC
*
689537 CATTTCTTACATTTTTCATACTTCATTTTCATCCTAACTACCCCAACAACATTGTTATGAAGATT
129 CATTTCTTACATTTTTCATACTTCATTTTCATCCTAACTACCCCAGCAACATTGTTATGAAGATT
** * *
689602 CAAGCTTTGGGTTTTTATTTTTACAAGAAAAA-AGGGGTTTTTATCATCTAAGCCTTAAGGAGAG
194 CAAGCTTTGGGTTTTTATTTTTGTAAGAAAAAGAGGGG-TTTTATCATCCAAGCTTTAAGGAGAG
* * * *
689666 ATTTTGCTAGCTAAAAAAGCTTTATTTCAGGATTCAATCATCAAGGTAGTGTATTTCTCATCCTT
258 -TTTTGCTAGCTAAAGAAGCTTTATTTCAGGATTCAATCATCAAGGTAGTATATTTCTAATACTT
* * *
689731 TGGAGTATTAAACTTTCATAGATTTCAAGAATTTGCTTA-ATTCAGTAGTTGAGCATTTTAGGAT
322 TGGAGTATTAAACTTTCATAGATTTCAAGAATTTGCTAAGATTTAGTAGTTGAGCATTTTAGGGT
** * * *
689795 TTCACATTTGATTCATGCCATAAATCATGAATTTTTTGTAAAA-CATGTGTTTTATGAAACCTTA
387 TTCATGTTTGATTCATGCCATAAATCATGAA-TTTGT-TAAAAGCATGTGTTTTATGACACATTA
* * * *
689859 ATACCCTATATAACTATCTACAACATCAGTACATGATTTAGAATCAAACTATAGTCTTTAGAGTA
450 ATACCCTAAATAACTACCCACATCATCAGTACATGATTTAGAATCAAACTATAGTCTTTAGAGTA
* *
689924 TTTTAGGTGTTTTCCCGAGCCTAAAATAACCATTTCAATGTTCAAGTATCGATACTAGGATGAAT
515 TTTTAGGTGTTTTCTCGAGCCTAAAATAACCATTTCAA-GTTCAAGTATCGATACT-GGATGAAC
* * *
689989 AATATCGATACTGGATGAATTAGGGTAAAAATAAGGATTTAAGCTAGGAGTATCGATATTGTAAA
578 AATATCGATACTAGATGAATTAGGGTAAAAATAAGGATTTAAGCTAGGAGTATCGATACTCTAAA
690054 CCCTAAACTCTAAATCCTAAACC
643 CCCTAAACTCTAAATCCTAAACC
* ** * *
690077 CTAAAAAATATAATTACCCATTTTA-AGGATGAGAGGTTTTATATTTCTCATTTTATTTTTTTCC
1 C-CAAAAGCATAATTACCCATTTTAGAGGATGAGAGGTTTTATATCTCTCATTTCATTTTTTTCC
*
690141 TTTTATTTCCATTTCTTCCTTCTTTCTTCTCAAACTCCATAAGCCAAAAGTGAGTCCTCTAAACC
65 TTTTATTTCCATTTCTTCCTTCTTCCTTCTCAAACTCCATAAGCCAAAAGTGAGTCCTCTAAACC
690206 ATTTCTTACATTTTTCATACTTCATTTTCATCCTAACTACCCTCAGCAACATTGTTATGAAGATT
130 ATTTCTTACATTTTTCATACTTCATTTTCATCCTAACTACCC-CAGCAACATTGTTATGAAGATT
*
690271 CAAGCTTTGGGTTTTTATTTTTGTAAGAAAAAGAGTGGTTTTATCATCCAAGCTTTAAGGAGAGT
194 CAAGCTTTGGGTTTTTATTTTTGTAAGAAAAAGAGGGGTTTTATCATCCAAGCTTTAAGGAGAGT
** *
690336 GTTTGCTAGCTAAAGAAGCTTTATTTTGGGATTCAATCATCAAGGTAGTATATTTATAATACTTT
259 -TTTGCTAGCTAAAGAAGCTTTATTTCAGGATTCAATCATCAAGGTAGTATATTTCTAATACTTT
* *
690401 GGAGTATTAATCTTTCATAGATTTCAAGAATTTGCTAAGATTTAGTAGTTGAGCATTTTGGGGTT
323 GGAGTATTAAACTTTCATAGATTTCAAGAATTTGCTAAGATTTAGTAGTTGAGCATTTTAGGGTT
* * *
690466 TCATGTTTGATTCATGCCATAAATCACGAATTTGTTAAAAGCATGTGTTTTATGACACATTCATG
388 TCATGTTTGATTCATGCCATAAATCATGAATTTGTTAAAAGCATGTGTTTTATGACACATTAATA
* * * *
690531 CCCTAAATAACTACCCACATTATTAGTACGTGATTTAGAATCAAACTATAGTCTTTAGCGTATTT
453 CCCTAAATAACTACCCACATCATCAGTACATGATTTAGAATCAAACTATAGTCTTTAGAGTATTT
690596 TAGGTGTTTTCTCGAGCCTAAAATAACCATTTCAAGATTCAAGTATCGATACTGGGATGAACAAT
518 TAGGTGTTTTCTCGAGCCTAAAATAACCATTTCAAG-TTCAAGTATCGATACT-GGATGAACAAT
* * * *
690661 ATTGATACTAGATGAATT-GTGGTAAAATTAGGGATTTCAAGCTGGGAGTATCGATACTCTAAAC
581 ATCGATACTAGATGAATTAG-GGTAAAAATAAGGATTT-AAGCTAGGAGTATCGATACTCTAAAC
* *
690725 CTTAAACTCTAAATCTTAAACC
644 CCTAAACTCTAAATCCTAAACC
*
690747 CCAAAAGCATAATGACCCATTTTAGAGGATGAGAGGTTTTATATCTCTCATTTCA-TTTTTTCCT
1 CCAAAAGCATAATTACCCATTTTAGAGGATGAGAGGTTTTATATCTCTCATTTCATTTTTTTCCT
*
690811 TTTATTTCCATTTCTTCCTTCTTGCTTCTCAAACTCCATAAGCCAAAAGTGAGTCCTCTAAACCA
66 TTTATTTCCATTTCTTCCTTCTTCCTTCTCAAACTCCATAAGCCAAAAGTGAGTCCTCTAAACCA
690876 TTTCTTACATTTTTCATACTTCATTTTCATCCTAACTACCCCCAGCAACATTGTTATGAAGATTC
131 TTTCTTACATTTTTCATACTTCATTTTCATCCTAACTA-CCCCAGCAACATTGTTATGAAGATTC
* * *
690941 AAGCTTTGGG-TATTATTTTTGTAATAAAAAGAGGGGTTTTATCATCCAAGCTTTAAGGAGATTT
195 AAGCTTTGGGTTTTTATTTTTGTAAGAAAAAGAGGGGTTTTATCATCCAAGCTTTAAGGAGAGTT
* * *
691005 TTTCTAGCTAAAGAACCTTTATTTCAGGATTCAATCATCAAGGTAATATATTTCTAATACTTTGG
260 TTGCTAGCTAAAGAAGCTTTATTTCAGGATTCAATCATCAAGGTAGTATATTTCTAATACTTTGG
*
691070 AGTATTAAGCTTTCATAGATTTCAAAGAATTTGCTAAGATTTAGTAGTTGAGCATTTTAGGGTTT
325 AGTATTAAACTTTCATAGATTTC-AAGAATTTGCTAAGATTTAGTAGTTGAGCATTTTAGGGTTT
* * * *
691135 CATGTTTGATTCATGCGATAAATCATGAATTTGTTGTAAAGCATGTGTTTTATGACACTTTTATA
389 CATGTTTGATTCATGCCATAAATCATGAATTTGTT-AAAAGCATGTGTTTTATGACACATTAATA
* *
691200 CCCTAAATAACTACCCAGATCATCA-TAAATGATTTAGAATCAAACTATAGTCTTTAGAGTATTT
453 CCCTAAATAACTACCCACATCATCAGTACATGATTTAGAATCAAACTATAGTCTTTAGAGTATTT
*
691264 TAGGTGCTTTTCT-AAGCCTAAAATAACCATTTCAAGGTTCAAGTATCGATACTGGATGAA
518 TAGGTG-TTTTCTCGAGCCTAAAATAACCATTTCAA-GTTCAAGTATCGATACTGGATGAA
691324 TTTGGGCAAA
Statistics
Matches: 1141, Mismatches: 90, Indels: 34
0.90 0.07 0.03
Matches are distributed among these distances:
667 89 0.08
668 341 0.30
669 571 0.50
670 140 0.12
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (665 bp):
CCAAAAGCATAATTACCCATTTTAGAGGATGAGAGGTTTTATATCTCTCATTTCATTTTTTTCCT
TTTATTTCCATTTCTTCCTTCTTCCTTCTCAAACTCCATAAGCCAAAAGTGAGTCCTCTAAACCA
TTTCTTACATTTTTCATACTTCATTTTCATCCTAACTACCCCAGCAACATTGTTATGAAGATTCA
AGCTTTGGGTTTTTATTTTTGTAAGAAAAAGAGGGGTTTTATCATCCAAGCTTTAAGGAGAGTTT
TGCTAGCTAAAGAAGCTTTATTTCAGGATTCAATCATCAAGGTAGTATATTTCTAATACTTTGGA
GTATTAAACTTTCATAGATTTCAAGAATTTGCTAAGATTTAGTAGTTGAGCATTTTAGGGTTTCA
TGTTTGATTCATGCCATAAATCATGAATTTGTTAAAAGCATGTGTTTTATGACACATTAATACCC
TAAATAACTACCCACATCATCAGTACATGATTTAGAATCAAACTATAGTCTTTAGAGTATTTTAG
GTGTTTTCTCGAGCCTAAAATAACCATTTCAAGTTCAAGTATCGATACTGGATGAACAATATCGA
TACTAGATGAATTAGGGTAAAAATAAGGATTTAAGCTAGGAGTATCGATACTCTAAACCCTAAAC
TCTAAATCCTAAACC
Found at i:692503 original size:20 final size:20
Alignment explanation
Indices: 692480--692518 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
692470 AACTACAAGG
692480 AAAGTTTTAAAACTCTTGTC
1 AAAGTTTTAAAACTCTTGTC
*
692500 AAAGTTTTGAAACTCTTGT
1 AAAGTTTTAAAACTCTTGT
692519 GAAGTTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (20 bp):
AAAGTTTTAAAACTCTTGTC
Found at i:694470 original size:15 final size:15
Alignment explanation
Indices: 694452--694492 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
694442 TTTTTACCTC
*
694452 ATTCTTTTTCTTATT
1 ATTCTTCTTCTTATT
694467 ATTC-TCTTCTTTATT
1 ATTCTTCTTC-TTATT
694482 -TTCTTCTTCTT
1 ATTCTTCTTCTT
694493 GATCCTCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.71
Consensus pattern (15 bp):
ATTCTTCTTCTTATT
Found at i:696825 original size:32 final size:32
Alignment explanation
Indices: 696789--696898 Score: 123
Period size: 32 Copynumber: 3.4 Consensus size: 32
696779 TCAGCATTTT
* *
696789 ATTCAGATAGTGCATAGTAGATTCAATATTGC
1 ATTCAGATAATGCATAGAAGATTCAATATTGC
* * **
696821 ATTCAAATAGTGCATAGAAGATTCAATATCAC
1 ATTCAGATAATGCATAGAAGATTCAATATTGC
* * *
696853 ATTCAGATAATGCATAGCAGAGTT-AGTGTTGC
1 ATTCAGATAATGCATAGAAGA-TTCAATATTGC
696885 ATTCAGATAATGCA
1 ATTCAGATAATGCA
696899 CAACAGAGTC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
32 64 0.97
33 2 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (32 bp):
ATTCAGATAATGCATAGAAGATTCAATATTGC
Found at i:696906 original size:32 final size:32
Alignment explanation
Indices: 696852--696963 Score: 154
Period size: 32 Copynumber: 3.5 Consensus size: 32
696842 TTCAATATCA
* *
696852 CATTCAGATAATGCATAGCAGAGTTAGTGTTG
1 CATTCAGATAATGCACAACAGAGTTAGTGTTG
*
696884 CATTCAGATAATGCACAACAGAGTCAGTGTTG
1 CATTCAGATAATGCACAACAGAGTTAGTGTTG
* * * *
696916 CATTTAGATGATGCACATCAGAGTTA-TGTTA
1 CATTCAGATAATGCACAACAGAGTTAGTGTTG
696947 CATTCAGATAATGCACA
1 CATTCAGATAATGCACA
696964 TGAACGTCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
31 19 0.27
32 51 0.73
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (32 bp):
CATTCAGATAATGCACAACAGAGTTAGTGTTG
Found at i:696999 original size:63 final size:64
Alignment explanation
Indices: 696859--697000 Score: 180
Period size: 63 Copynumber: 2.2 Consensus size: 64
696849 TCACATTCAG
* * * *
696859 ATAATGCATAGCAGAGTTAGTGTTGCATTCAGATAATGCACAACAGAGTCAGTGTTGCATTTAG
1 ATAATGCATATCAGAGTTAGTGTTACATTCAGATAATGCACAACAGAGTCAGTATTGCATTTAA
* * **
696923 ATGATGCACATCAGAGTTA-TGTTACATTCAGATAATGCACATGA-ACGTCAGTATTGCATTTAA
1 ATAATGCATATCAGAGTTAGTGTTACATTCAGATAATGCACAACAGA-GTCAGTATTGCATTTAA
*
696986 ATAATGCGTATCAGA
1 ATAATGCATATCAGA
697001 TATAGTATCT
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
62 1 0.02
63 49 0.74
64 16 0.24
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (64 bp):
ATAATGCATATCAGAGTTAGTGTTACATTCAGATAATGCACAACAGAGTCAGTATTGCATTTAA
Found at i:701758 original size:16 final size:16
Alignment explanation
Indices: 701739--701771 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
701729 ATACCGTTGG
701739 ATTTGTATACCAGTCT
1 ATTTGTATACCAGTCT
701755 ATTTGTATACCAGTCT
1 ATTTGTATACCAGTCT
701771 A
1 A
701772 GTTTCTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.42
Consensus pattern (16 bp):
ATTTGTATACCAGTCT
Found at i:703200 original size:37 final size:37
Alignment explanation
Indices: 703127--703200 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
703117 AGACAAGTTA
* *
703127 TGGTACATTCGTGTACATTACGTATTGAACTTTTGGT
1 TGGTACATTCGTGTACATTACGAATTGAACTGTTGGT
*
703164 TGGTACATTTGTGTACATTACGAATT-ACACTGTTGGT
1 TGGTACATTCGTGTACATTACGAATTGA-ACTGTTGGT
703201 GCACAAGTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.23, C:0.14, G:0.22, T:0.42
Consensus pattern (37 bp):
TGGTACATTCGTGTACATTACGAATTGAACTGTTGGT
Found at i:711298 original size:20 final size:20
Alignment explanation
Indices: 711269--711425 Score: 212
Period size: 20 Copynumber: 8.0 Consensus size: 20
711259 AAATTCAAAA
711269 TTTA-TTTCAGATTCATAGC
1 TTTACTTTCAGATTCATAGC
**
711288 TTTACTTTCAGATTCATAAA
1 TTTACTTTCAGATTCATAGC
*
711308 TTTA-TTTCATATTCATAGC
1 TTTACTTTCAGATTCATAGC
*
711327 TTTACTTTCA-ATTCATAGT
1 TTTACTTTCAGATTCATAGC
*
711346 TTTACTTTCAGATTCATAAC
1 TTTACTTTCAGATTCATAGC
*
711366 TTTACTTTCATATTCATAGC
1 TTTACTTTCAGATTCATAGC
* * *
711386 TTTACTTTCATATCCATAAC
1 TTTACTTTCAGATTCATAGC
711406 TTTACTTTCAGATTCATAGC
1 TTTACTTTCAGATTCATAGC
711426 CCAATGTATA
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
19 38 0.32
20 82 0.68
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.48
Consensus pattern (20 bp):
TTTACTTTCAGATTCATAGC
Found at i:711392 original size:40 final size:39
Alignment explanation
Indices: 711269--711425 Score: 208
Period size: 39 Copynumber: 4.0 Consensus size: 39
711259 AAATTCAAAA
* **
711269 TTTATTTCAGATTCATAGCTTTACTTTCAGATTCATAAA
1 TTTATTTCAGATTCATAACTTTACTTTCAGATTCATAGC
* * *
711308 TTTATTTCATATTCATAGCTTTACTTTCA-ATTCATAGT
1 TTTATTTCAGATTCATAACTTTACTTTCAGATTCATAGC
*
711346 TTTACTTTCAGATTCATAACTTTACTTTCATATTCATAGC
1 TTTA-TTTCAGATTCATAACTTTACTTTCAGATTCATAGC
* *
711386 TTTACTTTCATATCCATAACTTTACTTTCAGATTCATAGC
1 TTTA-TTTCAGATTCATAACTTTACTTTCAGATTCATAGC
711426 CCAATGTATA
Statistics
Matches: 107, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
38 11 0.10
39 51 0.48
40 45 0.42
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.48
Consensus pattern (39 bp):
TTTATTTCAGATTCATAACTTTACTTTCAGATTCATAGC
Found at i:713354 original size:90 final size:90
Alignment explanation
Indices: 713201--713377 Score: 318
Period size: 90 Copynumber: 2.0 Consensus size: 90
713191 ATTTCATAAA
*
713201 TACCTTTAAACCCTACAAACTTTCCAAACTACTCACCAAACTTACCAAGTTTACAAAATGATCCA
1 TACCTTTAAACCCTACAAACTTTCCAAACTACTCACCAAACTTACCAAGTTTACAAAACGATCCA
713266 ATTTCACATTCTGACATCAATTAAT
66 ATTTCACATTCTGACATCAATTAAT
*
713291 TACCTTTAAACCCTACAAACTTTCCAAACTACTCACCAAACTTACCAAGTTTCCAAAACGATCCA
1 TACCTTTAAACCCTACAAACTTTCCAAACTACTCACCAAACTTACCAAGTTTACAAAACGATCCA
* *
713356 ATTTTACATTCTGACATTAATT
66 ATTTCACATTCTGACATCAATT
713378 TTAACACTCT
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.31
Consensus pattern (90 bp):
TACCTTTAAACCCTACAAACTTTCCAAACTACTCACCAAACTTACCAAGTTTACAAAACGATCCA
ATTTCACATTCTGACATCAATTAAT
Found at i:713379 original size:19 final size:20
Alignment explanation
Indices: 713355--713399 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
713345 AAAACGATCC
* *
713355 AATTTT-ACATTCTGACATT
1 AATTTTAACACTCTAACATT
713374 AATTTTAACACTCTAACATT
1 AATTTTAACACTCTAACATT
713394 AATTTT
1 AATTTT
713400 CAGAATAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.47
Consensus pattern (20 bp):
AATTTTAACACTCTAACATT
Found at i:715290 original size:25 final size:25
Alignment explanation
Indices: 715257--715307 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
715247 ATCTTTTATA
*
715257 TTTCTCATTTCATT-TTCTTCCTTTT
1 TTTCCCATTTC-TTCTTCTTCCTTTT
715282 TTTCCCATTTCTTCCTTCTTCCTTTT
1 TTTCCCATTTCTT-CTTCTTCCTTTT
715308 AAAACTCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 2 0.09
25 10 0.43
26 11 0.48
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTCCCATTTCTTCTTCTTCCTTTT
Found at i:717082 original size:32 final size:32
Alignment explanation
Indices: 717046--717138 Score: 132
Period size: 32 Copynumber: 2.9 Consensus size: 32
717036 TATAATAGTA
*
717046 TCAGTATTTCATTCATATAGTGCATAGCAAAT
1 TCAGTATTTCATTCAGATAGTGCATAGCAAAT
* * *
717078 TCAGTATTGCATTCAGATAGTGCGTAGCATAT
1 TCAGTATTTCATTCAGATAGTGCATAGCAAAT
* *
717110 TCAGTATCTCATTCAGATAATGCATAGCA
1 TCAGTATTTCATTCAGATAGTGCATAGCA
717139 GAGTTAGTGT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (32 bp):
TCAGTATTTCATTCAGATAGTGCATAGCAAAT
Found at i:717155 original size:32 final size:31
Alignment explanation
Indices: 717046--717191 Score: 118
Period size: 32 Copynumber: 4.6 Consensus size: 31
717036 TATAATAGTA
* * *
717046 TCAGTATTTCATTCATATAGTGCATAGCAAAT
1 TCAGTATTGCATTCAGATAATGCATAGC-AAT
* *
717078 TCAGTATTGCATTCAGATAGTGCGTAGCATAT
1 TCAGTATTGCATTCAGATAATGCATAGCA-AT
717110 TCAGTATCT-CATTCAGATAATGCATAGCAGAGT
1 TCAGTAT-TGCATTCAGATAATGCATAGCA-A-T
* * * *
717143 T-AGTGTTGCATTCAAATAATGCACAAG-AACG
1 TCAGTATTGCATTCAGATAATGCA-TAGCAA-T
*
717174 TCAGTATTGCATTTAGAT
1 TCAGTATTGCATTCAGAT
717192 GATGAACATC
Statistics
Matches: 94, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
31 4 0.04
32 85 0.90
33 5 0.05
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (31 bp):
TCAGTATTGCATTCAGATAATGCATAGCAAT
Found at i:717713 original size:22 final size:23
Alignment explanation
Indices: 717661--717714 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
717651 CCCTAGTGTT
* *
717661 AAGGCACTTTTGTATTAGTTCTA
1 AAGGCACTTTAGTATTAGTGCTA
717684 AAGGCACTTTAGTATTAGTGCT-
1 AAGGCACTTTAGTATTAGTGCTA
*
717706 CAGGCACTT
1 AAGGCACTT
717715 CTGTGATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 8 0.29
23 20 0.71
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (23 bp):
AAGGCACTTTAGTATTAGTGCTA
Found at i:718097 original size:13 final size:12
Alignment explanation
Indices: 718053--718096 Score: 79
Period size: 12 Copynumber: 3.6 Consensus size: 12
718043 TGCATTATTG
718053 TATTTTGAGATT
1 TATTTTGAGATT
718065 TATTTTGAGATT
1 TATTTTGAGATT
718077 TATTTTGGAGATT
1 TATTTT-GAGATT
718090 TATTTTG
1 TATTTTG
718097 GGAGCTCCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 19 0.61
13 12 0.39
ACGTcount: A:0.23, C:0.00, G:0.18, T:0.59
Consensus pattern (12 bp):
TATTTTGAGATT
Found at i:719791 original size:5 final size:5
Alignment explanation
Indices: 719770--719852 Score: 152
Period size: 5 Copynumber: 17.0 Consensus size: 5
719760 GTGCACACAC
719770 ATATA ATAT- ATAT- ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
719818 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA
719853 TCCCACTGAC
Statistics
Matches: 77, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.10
5 69 0.90
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:720178 original size:20 final size:20
Alignment explanation
Indices: 720103--720451 Score: 447
Period size: 20 Copynumber: 17.5 Consensus size: 20
720093 GCGAATATGA
* *
720103 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
720123 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
720143 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
720163 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
720183 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
720203 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
720223 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* *
720243 AAACCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
720263 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
720283 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
720303 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
720323 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
720343 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
720363 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
720383 -AATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
720402 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
720422 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
720442 AAATCACAAC
1 AAATCGCAAC
720452 ACTGAAATTT
Statistics
Matches: 290, Mismatches: 31, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
19 17 0.06
20 270 0.93
21 3 0.01
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:721170 original size:24 final size:24
Alignment explanation
Indices: 721131--721177 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
721121 AAATTTGGTC
721131 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
721155 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
721178 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:721369 original size:12 final size:12
Alignment explanation
Indices: 721352--721376 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
721342 ATATAATCCT
721352 GAAGAAGAAAAA
1 GAAGAAGAAAAA
721364 GAAGAAGAAAAA
1 GAAGAAGAAAAA
721376 G
1 G
721377 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:722484 original size:28 final size:28
Alignment explanation
Indices: 722444--722505 Score: 124
Period size: 28 Copynumber: 2.2 Consensus size: 28
722434 GGTGTTCATT
722444 TGTATAGAAATCTAAAATCAAGGTCTGC
1 TGTATAGAAATCTAAAATCAAGGTCTGC
722472 TGTATAGAAATCTAAAATCAAGGTCTGC
1 TGTATAGAAATCTAAAATCAAGGTCTGC
722500 TGTATA
1 TGTATA
722506 AAAAAGCACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.31
Consensus pattern (28 bp):
TGTATAGAAATCTAAAATCAAGGTCTGC
Found at i:723690 original size:19 final size:19
Alignment explanation
Indices: 723668--723973 Score: 351
Period size: 19 Copynumber: 17.4 Consensus size: 19
723658 ACGGAAATAC
*
723668 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
723687 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
723701 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
723721 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
723735 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
723753 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
723772 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
723786 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
723805 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
723824 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
*
723838 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
723857 AATCGCAATGCGAAGA-GAA
1 AATCGCAATGCGAA-ATGAA
723876 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
723895 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
723914 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
723928 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
723947 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
723966 AATCGCAA
1 AATCGCAA
723974 CGAGATAATC
Statistics
Matches: 248, Mismatches: 10, Indels: 58
0.78 0.03 0.18
Matches are distributed among these distances:
14 48 0.19
15 2 0.01
16 16 0.06
17 14 0.06
18 21 0.08
19 133 0.54
20 14 0.06
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:723740 original size:14 final size:15
Alignment explanation
Indices: 723721--723798 Score: 52
Period size: 14 Copynumber: 4.8 Consensus size: 15
723711 CGGAAATGAA
723721 AATCGCAA-CGAGAG
1 AATCGCAAGCGAGAG
*
723735 AATCGCAATGCGAAATG
1 AATCGCAA-GCGAGA-G
*
723752 AAATCGCAATGCGAAATGAA
1 -AATCGCAA-GCG--A-GAG
723772 AATCGCAA-CGAGAG
1 AATCGCAAGCGAGAG
723786 AATCGCAATGCGA
1 AATCGCAA-GCGA
723799 AATGAAAATC
Statistics
Matches: 51, Mismatches: 4, Indels: 16
0.72 0.06 0.23
Matches are distributed among these distances:
14 18 0.35
15 1 0.02
16 7 0.14
17 3 0.06
18 12 0.24
19 8 0.16
20 1 0.02
21 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (15 bp):
AATCGCAAGCGAGAG
Found at i:723756 original size:52 final size:52
Alignment explanation
Indices: 723696--723973 Score: 363
Period size: 52 Copynumber: 5.2 Consensus size: 52
723686 AAATCCCAAC
723696 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
723749 ATG-AAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
723800 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
723852 ATTAAAATCGCAATGCGAAGA-GAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAA-ATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAA
*
723909 ATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAA
723961 ATGAAAATCGCAA
1 ATGAAAATCGCAA
723974 CGAGATAATC
Statistics
Matches: 213, Mismatches: 5, Indels: 15
0.91 0.02 0.06
Matches are distributed among these distances:
51 39 0.18
52 134 0.63
53 4 0.02
54 4 0.02
55 4 0.02
56 1 0.00
57 27 0.13
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.14
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:723930 original size:142 final size:137
Alignment explanation
Indices: 723668--724011 Score: 516
Period size: 142 Copynumber: 2.5 Consensus size: 137
723658 ACGGAAATAC
* * *
723668 AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAA--CG
1 AATCGCAATGCGAAATGAAAATCGCAAC--GAAAATCGCAATGC-GAAATTAAAATCGCAATGCG
*
723731 -AGAGAATCGCAATGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAAT
63 AAGAGAATCGCAATGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAAT
723795 GCGAAATGAA
128 GCGAAATGAA
723805 AATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAAATTAAAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-A-AATCGCAATGCGAAATTAAAATCGCAATGCGA
723870 AGAGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCA
64 AGAG--AATCGCAATGCGAAATG-AAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCA
723935 ATGCGAAATGAA
126 ATGCGAAATGAA
*
723947 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAATTATAAA-CGCATTGCG
1 AATCGCAATGCGAAATGAAAATCGCAACGA-A-AATCGCAATGCGAAATTA-AAATCGCAATGCG
724011 A
63 A
724012 TTTTCATTTC
Statistics
Matches: 191, Mismatches: 7, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
135 2 0.01
136 16 0.08
137 37 0.19
138 2 0.01
139 4 0.02
141 17 0.09
142 110 0.58
143 3 0.02
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (137 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAAAATCGCAATGCGAAATTAAAATCGCAATGCGAAG
AGAATCGCAATGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCG
AAATGAA
Found at i:723974 original size:52 final size:54
Alignment explanation
Indices: 723668--723995 Score: 294
Period size: 52 Copynumber: 6.3 Consensus size: 54
723658 ACGGAAATAC
* *
723668 AATCGCAACGCGAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GC-GAAA-G-A
*
723721 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATG-AAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAA-G-A
*
723772 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAA-G-A
* *
723824 AATCGCAA--CGACA-G--AATCGCAATGCGAAATTAAAATCGCAATGCGAAGAGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAA-AG-A
723876 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-CGAAAG-
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAAAGA
723928 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-CG--AGA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAAAGA
723979 TAATCGCAATGCGAAAT
1 -AATCGCAATGCGAAAT
723996 TATAAACGCA
Statistics
Matches: 254, Mismatches: 5, Indels: 33
0.87 0.02 0.11
Matches are distributed among these distances:
48 9 0.04
49 1 0.00
50 3 0.01
51 41 0.16
52 149 0.59
53 12 0.05
54 8 0.03
55 5 0.02
57 26 0.10
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.14
Consensus pattern (54 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAAAGA
Found at i:723984 original size:33 final size:33
Alignment explanation
Indices: 723668--723995 Score: 257
Period size: 33 Copynumber: 9.5 Consensus size: 33
723658 ACGGAAATAC
* *
723668 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAA
*
723701 AATCGCAATGCGGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGAGAA
723735 AATCGCAATGCGAAATG-AAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
*
723772 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
* *
723805 AATCGCAATGCGAAATGAAAATCGCAACGACAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAA
*
723838 AATCGCAATGCGAAATTAAAATCGCAATGCGAAGAGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--C---GAGAA
723876 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
723914 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
*
723947 AATCGCAATGCGAAATGAAAATCGCAACGAGAT
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAA
723980 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
723996 TATAAACGCA
Statistics
Matches: 256, Mismatches: 13, Indels: 52
0.80 0.04 0.16
Matches are distributed among these distances:
32 10 0.04
33 116 0.45
34 33 0.13
35 13 0.05
36 11 0.04
37 12 0.05
38 61 0.24
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.14
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAA
Found at i:724111 original size:19 final size:19
Alignment explanation
Indices: 724002--724103 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
723992 AAATTATAAA
724002 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
724021 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
724041 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
724057 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
724074 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
724093 CGCATTGCGAT
1 CGCATTGCGAT
724104 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:724228 original size:14 final size:14
Alignment explanation
Indices: 724209--724245 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
724199 CATCAATTAC
724209 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
724223 ACAAATCATCTTTT
1 ACAAATCAACTTTT
724237 ACAAATCAA
1 ACAAATCAA
724246 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:726202 original size:19 final size:19
Alignment explanation
Indices: 726157--726220 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
726147 TAGTTTACTT
* *
726157 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
726177 T-GACAACGCGAAACCAAAA
1 TCG-CAACGCGAAACCAAAA
**
726196 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
726215 TCGCAA
1 TCGCAA
726221 TGACAGAATC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
19 26 0.68
20 12 0.32
ACGTcount: A:0.48, C:0.25, G:0.16, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:726232 original size:33 final size:33
Alignment explanation
Indices: 726194--726288 Score: 163
Period size: 33 Copynumber: 2.9 Consensus size: 33
726184 GCGAAACCAA
*
726194 AATCGCAACGCGAAATGAAAATCGCAATGACAG
1 AATCGCAACGCGAAATGAAAATCGCAATGAAAG
* *
726227 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAATGAAAG
726260 AATCGCAACGCGAAATGAAAATCGCAATG
1 AATCGCAACGCGAAATGAAAATCGCAATG
726289 CGATTTTGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.46, C:0.20, G:0.21, T:0.13
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAATGAAAG
Found at i:726265 original size:14 final size:14
Alignment explanation
Indices: 726213--726269 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
726203 GCGAAATGAA
* *
726213 AATCGCAATGACAG
1 AATCGCAACGAAAG
726227 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
726244 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
726260 AATCGCAACG
1 AATCGCAACG
726270 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 18 0.50
16 4 0.11
17 6 0.17
19 8 0.22
ACGTcount: A:0.46, C:0.21, G:0.21, T:0.12
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:726309 original size:19 final size:19
Alignment explanation
Indices: 726287--726414 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
726277 AAAATCGCAA
726287 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
726306 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
726320 TGCGA-TTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
726338 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
726352 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
726371 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
726390 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
726410 TGCGA
1 TGCGA
726415 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
13 2 0.02
14 20 0.23
16 3 0.03
17 1 0.01
18 10 0.11
19 39 0.44
20 13 0.15
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.45
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:726372 original size:33 final size:34
Alignment explanation
Indices: 726287--726377 Score: 143
Period size: 32 Copynumber: 2.8 Consensus size: 34
726277 AAAATCGCAA
726287 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTTGTCGT
726320 TGCGA-TTTGGTTTCGCGTTGCGATTC-TGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTTGTCGT
**
726352 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
726378 TTGGTTTCGC
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
32 29 0.54
33 25 0.46
ACGTcount: A:0.08, C:0.19, G:0.29, T:0.45
Consensus pattern (34 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTTGTCGT
Found at i:726627 original size:93 final size:93
Alignment explanation
Indices: 726458--726919 Score: 850
Period size: 93 Copynumber: 5.1 Consensus size: 93
726448 TTGAATGGAT
726458 AAATTTACTTTCAACC-AAA-ACAAAACAAAGACAAATACTATTTCACAG-GTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
726520 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
726548 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
726613 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
726641 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
726706 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
726734 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATAC-ATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
726798 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
726826 AAA-TTACTTTCAACCAAAAGACAAAACAAAGAC-AATACTA-TTCACAGT-TTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
* *
726887 AGTTTAGTAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
726915 AAATT
1 AAATT
726920 ACTAAGCAAT
Statistics
Matches: 365, Mismatches: 2, Indels: 10
0.97 0.01 0.03
Matches are distributed among these distances:
89 42 0.12
90 30 0.08
91 34 0.09
92 84 0.23
93 175 0.48
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:726796 original size:185 final size:186
Alignment explanation
Indices: 726458--726919 Score: 850
Period size: 185 Copynumber: 2.5 Consensus size: 186
726448 TTGAATGGAT
726458 AAATTTACTTTCAACC-AAA-ACAAAACAAAGACAAATACTATTTCACAG-GTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
726520 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
726585 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
726641 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
726706 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
726771 TAC-ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
726826 AAA-TTACTTTCAACCAAAAGACAAAACAAAGAC-AATACTA-TTCACAGT-TTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
* *
726887 AGTTTAGTAGAATTGGCAGCAACCGAATAAATT
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATT
726920 ACTAAGCAAT
Statistics
Matches: 274, Mismatches: 2, Indels: 8
0.96 0.01 0.03
Matches are distributed among these distances:
181 44 0.16
182 8 0.03
183 23 0.08
184 33 0.12
185 84 0.31
186 82 0.30
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Done.