Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009075.1 Hibiscus syriacus cultivar Beakdansim tig00112508_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1223780
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 7
Found at i:518891 original size:99 final size:99
Alignment explanation
Indices: 518719--518910 Score: 285
Period size: 99 Copynumber: 1.9 Consensus size: 99
518709 GGATAGCTCA
* * * ** *
518719 ATATTATAATCATCTTTATTAGGCTAGTTGAATATTATCCATAAAGTTGGGGCATTTAACCAATT
1 ATATTATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGAGCATTTAACCAATT
*
518784 GCTTTAGAGGGACAGCGCAAGCTTTATTGTATAG
66 GCTCTAGAGGGACAGCGCAAGCTTTATTGTATAG
* *
518818 ATATTATAATCACCTTTATCAGGCTAGCTGAATCTTATCCATAAAGCCGGAGCATTTAACTAATT
1 ATATTATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGAGCATTTAACCAATT
* *
518883 GCTCTAGAGGGATAGCTCAAGCTTTATT
66 GCTCTAGAGGGACAGCGCAAGCTTTATT
518911 ATAATCTGGG
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 82 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (99 bp):
ATATTATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGAGCATTTAACCAATT
GCTCTAGAGGGACAGCGCAAGCTTTATTGTATAG
Found at i:519434 original size:10 final size:11
Alignment explanation
Indices: 519405--519435 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
519395 AATATCCATA
519405 TAAAAAGAAAGT
1 TAAAAA-AAAGT
519417 TAAAAAAAAGT
1 TAAAAAAAAGT
519428 TAAAAAAA
1 TAAAAAAA
519436 TATGAGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.68
12 6 0.32
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (11 bp):
TAAAAAAAAGT
Found at i:525157 original size:84 final size:83
Alignment explanation
Indices: 525060--525323 Score: 250
Period size: 84 Copynumber: 3.2 Consensus size: 83
525050 TTTTGTTAAT
** * *
525060 AGATAGCTTTTCTCATCTTAAGCTATGATGTAAATTTGATACGCCCTTGAGCTAAATAAATTAAA
1 AGATAGCCCTTCTC-TCTTAAGCTATGATGTAAATTTGATATGCCCTTGAGCTGAATAAATTAAA
*
525125 CTCGACGGTTTTGTTTGAC
65 CTCGAAGGTTTTGTTTGAC
* * * * * * *
525144 AGATAGTCCTTCTCTCCTTGAGCTATGCTGTAAATTTGATATGTCCTTCAGCTGAATGTAATTGA
1 AGATAGCCCTTCTCT-CTTAAGCTATGATGTAAATTTGATATGCCCTTGAGCTGAAT-AAATTAA
*
525209 ACTCAAAGG-TTTG-TTGAC
64 ACTCGAAGGTTTTGTTTGAC
* * * * *
525227 AGATAGCCCTTCTCGTCTTCAGTTAT-ATTGTAAATTCG-TATTCCCTTGAGCTGAATAGAATCA
1 AGATAGCCCTTCTC-TCTTAAGCTATGA-TGTAAATTTGATATGCCCTTGAGCTGAATA-AATTA
*
525290 AACTCGAAGGTTTT-TATTGAT
63 AACTCGAAGGTTTTGT-TTGAC
*
525311 AGATAGCACTTCT
1 AGATAGCCCTTCT
525324 TTCCTTCAAC
Statistics
Matches: 145, Mismatches: 27, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
82 27 0.19
83 39 0.27
84 67 0.46
85 12 0.08
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (83 bp):
AGATAGCCCTTCTCTCTTAAGCTATGATGTAAATTTGATATGCCCTTGAGCTGAATAAATTAAAC
TCGAAGGTTTTGTTTGAC
Found at i:527117 original size:99 final size:99
Alignment explanation
Indices: 526945--527136 Score: 269
Period size: 99 Copynumber: 1.9 Consensus size: 99
526935 GGATAGCTCA
* * * * * *
526945 ATATTATAATCACCTTTATCAGTCTAGTTGAATCTTATCCATATAGTCGTGGCGTTTAACCAATT
1 ATATTATAATCACCTTTATCAGGCTAGCTAAATCTTATCCATAAAGTCGGGGCATTTAACCAATT
*
527010 GATTTAGAGGGACAACTCAAGCTTTATTGTATAG
66 GATCTAGAGGGACAACTCAAGCTTTATTGTATAG
*
527044 ATATTATAATCACCTTTATCAGGCTAGCTAAATCTTATCCATAAAG-CTGGGGCATTTAACTAAT
1 ATATTATAATCACCTTTATCAGGCTAGCTAAATCTTATCCATAAAGTC-GGGGCATTTAACCAAT
* **
527108 TGCTCTAGAGGGACTGCTCAAGCTTTATT
65 TGATCTAGAGGGACAACTCAAGCTTTATT
527137 ATAATCTGTG
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
98 1 0.01
99 80 0.99
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (99 bp):
ATATTATAATCACCTTTATCAGGCTAGCTAAATCTTATCCATAAAGTCGGGGCATTTAACCAATT
GATCTAGAGGGACAACTCAAGCTTTATTGTATAG
Found at i:530435 original size:20 final size:20
Alignment explanation
Indices: 530412--530452 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
530402 ATTTTCATGG
530412 AAATAAATAAAA-TAATAAAT
1 AAATAAATAAAAGTAA-AAAT
530432 AAATAAATAAAAGTAAAAAT
1 AAATAAATAAAAGTAAAAAT
530452 A
1 A
530453 TGTTAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (20 bp):
AAATAAATAAAAGTAAAAAT
Found at i:531228 original size:20 final size:20
Alignment explanation
Indices: 531191--531229 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
531181 AACTCATTCT
*
531191 CTCTTTCTCTTATTTTTTTA
1 CTCTTTCTCTTATATTTTTA
* *
531211 CTCTTTCTTTTCTATTTTT
1 CTCTTTCTCTTATATTTTT
531230 GAATATATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.72
Consensus pattern (20 bp):
CTCTTTCTCTTATATTTTTA
Found at i:534256 original size:42 final size:42
Alignment explanation
Indices: 534209--534300 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
534199 ACTTCAACAA
* *
534209 TGACAAAAATAATTGTCGTCATAAATCACAAACTAGGATTAG
1 TGACAAAAATAATTGTCGTCATAAATCACAAACTAAGACTAG
*
534251 TGACAAAAATAATTGTCGTCATAAATCACCAACTAAGACTAG
1 TGACAAAAATAATTGTCGTCATAAATCACAAACTAAGACTAG
534293 TGACAAAA
1 TGACAAAA
534301 TAGTTTCGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (42 bp):
TGACAAAAATAATTGTCGTCATAAATCACAAACTAAGACTAG
Found at i:535670 original size:3 final size:3
Alignment explanation
Indices: 535662--535689 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
535652 GAATAGGGTT
535662 TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG T
535690 ACTCACTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:536101 original size:70 final size:73
Alignment explanation
Indices: 535925--536101 Score: 213
Period size: 71 Copynumber: 2.5 Consensus size: 73
535915 AAAAAAATCA
* * *
535925 AAAGTATTGATATTTGTGGAAAAA-TATCGATACTTTGCAGCCTTCTCATTTTTAATGTTTTTCT
1 AAAGTATCGATATTTGT-GAAAAAGTATCGATACTTTACAGCCTTCTCATTTATAATGTTTTTCT
535989 TTAAATTCG
65 TTAAATTCG
* * *
535998 --AGTATCGATATTTGTGGAAAAGTATTGATACTTTACAGCCTTCTCATTTATCATG-TTTT-TT
1 AAAGTATCGATATTTGTGAAAAAGTATCGATACTTTACAGCCTTCTCATTTATAATGTTTTTCTT
* *
536059 T-AGTTTG
66 TAAATTCG
* *
536066 AAAGTATCGATACTTGTGAAAAAGTATCCATACTTT
1 AAAGTATCGATATTTGTGAAAAAGTATCGATACTTT
536102 CGAATTTAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
68 4 0.04
69 3 0.03
70 39 0.44
71 43 0.48
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (73 bp):
AAAGTATCGATATTTGTGAAAAAGTATCGATACTTTACAGCCTTCTCATTTATAATGTTTTTCTT
TAAATTCG
Found at i:536325 original size:77 final size:77
Alignment explanation
Indices: 536188--536484 Score: 289
Period size: 77 Copynumber: 3.8 Consensus size: 77
536178 CTTTCAATTT
* * * * *
536188 TTTTA-TAATAAAGATATTAACATTCCAGATCGGAAC-TACTTTCTAATTGAACTATAACATTTT
1 TTTTATTAATAAAAATATTAACATTCCAGATCGTAACATA-TTTCTTAGTGAACTATGACATTTT
*
536251 TTGGCACAACCTA
65 TTGGCACAACCCA
** * * *
536264 TTTTATTAATAAAAATATTAACATTTTATATCGTAACATATTTCTTAGTGAACCATGACATTCTT
1 TTTTATTAATAAAAATATTAACATTCCAGATCGTAACATATTTCTTAGTGAACTATGACATTTTT
* *
536329 AGGCGCAACCCA
66 TGGCACAACCCA
* * *
536341 TTTTATTAATAAAAATATTAACATTCCAGAACGTAACATTTTTCTTAGTGAATTATGACATTTTT
1 TTTTATTAATAAAAATATTAACATTCCAGATCGTAACATATTTCTTAGTGAACTATGACA-TTTT
*
536406 TTAGCGA-AACCCA
65 TTGGC-ACAACCCA
* * * *** *
536419 TATTATTAATAAAAAATATCAATATTCCAGATAACAACCTATTTCTTTA-TGAA-TCATGACATT
1 TTTTATTAAT-AAAAATATTAACATTCCAGATCGTAACATATTTC-TTAGTGAACT-ATGACATT
536482 TTT
63 TTT
536485 AGGCGCAATC
Statistics
Matches: 181, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
76 5 0.03
77 108 0.60
78 29 0.16
79 36 0.20
80 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.39
Consensus pattern (77 bp):
TTTTATTAATAAAAATATTAACATTCCAGATCGTAACATATTTCTTAGTGAACTATGACATTTTT
TGGCACAACCCA
Found at i:540739 original size:21 final size:21
Alignment explanation
Indices: 540713--540764 Score: 95
Period size: 21 Copynumber: 2.4 Consensus size: 21
540703 GTGGAGTCTG
540713 AACACAAGAACTTTGGTGCAA
1 AACACAAGAACTTTGGTGCAA
540734 AACACAAGAACTTTGGTGCAA
1 AACACAAGAACTTTGGTGCAA
540755 AACACCAAGA
1 AACA-CAAGA
540765 GAAGAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.15
Consensus pattern (21 bp):
AACACAAGAACTTTGGTGCAA
Found at i:549032 original size:26 final size:27
Alignment explanation
Indices: 548974--549025 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
548964 AGTAAAAAAC
**
548974 TTAATAAAAAATAAATAATTATTTTAA
1 TTAATAAAAAATAAATAAAAATTTTAA
549001 TTAATAAAAAAT-AATAAAAATTTTA
1 TTAATAAAAAATAAATAAAAATTTTA
549026 CATAATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
TTAATAAAAAATAAATAAAAATTTTAA
Found at i:549504 original size:13 final size:13
Alignment explanation
Indices: 549486--549510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
549476 AATTTTAGAT
549486 ATTTAAAAAAAAA
1 ATTTAAAAAAAAA
549499 ATTTAAAAAAAA
1 ATTTAAAAAAAA
549511 TTACAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
ATTTAAAAAAAAA
Found at i:549837 original size:20 final size:20
Alignment explanation
Indices: 549812--549850 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
549802 GAGTCCAAGA
549812 GACTTACATATAAATTTGGC
1 GACTTACATATAAATTTGGC
549832 GACTTACATATAAATTTGG
1 GACTTACATATAAATTTGG
549851 GGGAGACGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (20 bp):
GACTTACATATAAATTTGGC
Found at i:554301 original size:32 final size:33
Alignment explanation
Indices: 554228--554302 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 33
554218 TAGTTAAACA
*
554228 ATTAAAAATATAAAAAAATTAACTTTATTATTTT
1 ATTAAAAATATAAAAAAA-TAAATTTATTATTTT
* * *
554262 ATTAAATATAGAAAGAAA-AAATTTA-TA-TTT
1 ATTAAAAATATAAAAAAATAAATTTATTATTTT
554292 ATTAAAAATAT
1 ATTAAAAATAT
554303 CCATTTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
30 12 0.34
31 2 0.06
32 6 0.17
34 15 0.43
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (33 bp):
ATTAAAAATATAAAAAAATAAATTTATTATTTT
Found at i:555721 original size:61 final size:59
Alignment explanation
Indices: 555608--555721 Score: 151
Period size: 59 Copynumber: 1.9 Consensus size: 59
555598 TAATAATATC
*
555608 TTTTAATTTGAAATATCAAAAGATATAAACACTTTTACTATTCAAACTTAAATAAATTA
1 TTTTAATTTGAAATATCAAAAGATATAAACACTTTTAATATTCAAACTTAAATAAATTA
* *
555667 TTTTAATTTGAAATATTCAAAAG-TATATACTTA-TATTTAATATTCAAAGTTAAAT
1 TTTTAATTTGAAATA-TCAAAAGATATAAAC--ACT-TTTAATATTCAAACTTAAAT
555722 GGATAATAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
59 21 0.44
60 8 0.17
61 19 0.40
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (59 bp):
TTTTAATTTGAAATATCAAAAGATATAAACACTTTTAATATTCAAACTTAAATAAATTA
Found at i:556913 original size:137 final size:139
Alignment explanation
Indices: 556643--556918 Score: 522
Period size: 137 Copynumber: 2.0 Consensus size: 139
556633 GATCATTATG
556643 GCGAGGGTCGACTCGAATTATTCCCTAAATTAAGAGGACTATATTAAAATCTAGCCAAAAGTGGA
1 GCGAGGGTCGACTCGAATTATTCCCTAAATTAAGAGGACTATATTAAAATCTAGCCAAAAGTGGA
556708 GACTCTATTTAACCTATTTAATTATGTAATATTAAACTCTAATCGAAGTTCGGGATTAAAAGGGT
66 GACTCTATTTAACCTATTTAATTATGTAATATTAAACTCTAATCGAAGTTCGGGATTAAAAGGGT
556773 CAAGATCTA
131 CAAGATCTA
556782 GCGAGGGTCGACTCGAATTATTCCCTAAATTAAGAGGACTATATTAAAATCTAGCCAAAAGT-G-
1 GCGAGGGTCGACTCGAATTATTCCCTAAATTAAGAGGACTATATTAAAATCTAGCCAAAAGTGGA
556845 GACTCTATTTAACCTATTTAATTATGTAA-ATTAAAACTCTAATCGAAGTTCGGGATTAAAAGGG
66 GACTCTATTTAACCTATTTAATTATGTAATATT-AAACTCTAATCGAAGTTCGGGATTAAAAGGG
556909 TCAAGATCTA
130 TCAAGATCTA
556919 AAATATCGAG
Statistics
Matches: 136, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
136 3 0.02
137 70 0.51
138 1 0.01
139 62 0.46
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (139 bp):
GCGAGGGTCGACTCGAATTATTCCCTAAATTAAGAGGACTATATTAAAATCTAGCCAAAAGTGGA
GACTCTATTTAACCTATTTAATTATGTAATATTAAACTCTAATCGAAGTTCGGGATTAAAAGGGT
CAAGATCTA
Found at i:559681 original size:21 final size:21
Alignment explanation
Indices: 559657--559696 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
559647 GAAATCAAGT
559657 TTTAA-AATTACTCCCCCTTAC
1 TTTAACAATT-CTCCCCCTTAC
*
559678 TTTAACACTTCTCCCCCTT
1 TTTAACAATTCTCCCCCTT
559697 TTTGTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.40
Consensus pattern (21 bp):
TTTAACAATTCTCCCCCTTAC
Found at i:561720 original size:21 final size:23
Alignment explanation
Indices: 561651--561731 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 23
561641 GACCCCGTGG
*
561651 GGGGGTATCGATTCCC--T-AAA
1 GGGGGAATCGATTCCCATTCAAA
*
561671 GGGAAGAATCGATTCCCATTCAAAA
1 GGG-GGAATCGATTCCCATTC-AAA
*
561696 GGGGGAATCG-TTCCCCTTC-AA
1 GGGGGAATCGATTCCCATTCAAA
*
561717 GGGGGTATCGATTCC
1 GGGGGAATCGATTCC
561732 TCCTACACTA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
20 3 0.06
21 22 0.44
22 4 0.08
23 9 0.18
24 6 0.12
25 6 0.12
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (23 bp):
GGGGGAATCGATTCCCATTCAAA
Found at i:562043 original size:262 final size:263
Alignment explanation
Indices: 561565--562076 Score: 940
Period size: 262 Copynumber: 2.0 Consensus size: 263
561555 ATTTTGGGAT
*
561565 GATAGAGAGTGACGACATGAGAGAATAGGATGAAGGGTTTTTGAGAGAAAATGGTTTATTTGGGT
1 GATAGAGAGTGACGACATGAGAGAAGAGGATGAAGGGTTTTTGAGAGAAAATGGTTTATTTGGGT
561630 GTAATAAACCAGACCCCGTGGGGGGGTATCGATTCCCTAAAGGGAAGAATCGATTCCCATTCAAA
66 GTAATAAACCAGACCCCGTGGGGGGGTATCGATTCCCTAAAGGGAAGAATCGATTCCCATTCAAA
* *
561695 AGGGGGAATCGTTCCCCTTCAAGGGGGTATCGATTCCTCCTACACTAAAATTCAAAAATCTGTAT
131 AGGGGGAATCGTTCCCCTTCAAGGGGGTATCGAATCCTCCTACACTAAAATTCAAAAATCTATAT
*
561760 TTTAAACACTCAAAATGCTAAATTAATTTTCTCTAGTGGTATTGGCAACTCATATTGTTAAATTA
196 TTTAAACACTCAAAATGCTAAATTAATTTGCTCTAGTGGTATTGGCAACTCATATTGTTAAATTA
561825 ATC
261 ATC
561828 GATAGAGAGTGAACGACATGAGAGAAGAGGATGAAGGG-TTTTGA-AGAAAATGGTTTATTTGGG
1 GATAGAGAGTG-ACGACATGAGAGAAGAGGATGAAGGGTTTTTGAGAGAAAATGGTTTATTTGGG
561891 TGTAATAAACCAGACCCCGT-GGGGGGTATCGATTCCCTAAAGGGAAGAATCGATTCCCATTCAA
65 TGTAATAAACCAGACCCCGTGGGGGGGTATCGATTCCCTAAAGGGAAGAATCGATTCCCATTCAA
561955 AAGGGGGAATCAGTTCCCCTTCAAGGGGGTATCGAATCCTCCTACACTAAAATTCAAAAATCTAT
130 AAGGGGGAATC-GTTCCCCTTCAAGGGGGTATCGAATCCTCCTACACTAAAATTCAAAAATCTAT
*
562020 ATTTTAAACACTCAAAATGCTAAATTAATTTGCTCTAGTGGTATTGGCAATTCATAT
194 ATTTTAAACACTCAAAATGCTAAATTAATTTGCTCTAGTGGTATTGGCAACTCATAT
562077 ATTGAAAATT
Statistics
Matches: 242, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
261 55 0.23
262 145 0.60
263 17 0.07
264 25 0.10
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (263 bp):
GATAGAGAGTGACGACATGAGAGAAGAGGATGAAGGGTTTTTGAGAGAAAATGGTTTATTTGGGT
GTAATAAACCAGACCCCGTGGGGGGGTATCGATTCCCTAAAGGGAAGAATCGATTCCCATTCAAA
AGGGGGAATCGTTCCCCTTCAAGGGGGTATCGAATCCTCCTACACTAAAATTCAAAAATCTATAT
TTTAAACACTCAAAATGCTAAATTAATTTGCTCTAGTGGTATTGGCAACTCATATTGTTAAATTA
ATC
Found at i:568501 original size:59 final size:59
Alignment explanation
Indices: 568424--568535 Score: 197
Period size: 59 Copynumber: 1.9 Consensus size: 59
568414 GAGTAGTAGG
*
568424 AAATGTTAATCCCTCAAGTGGGGCGTTACTGATTCAAAATACCGTGAATCGAGAAAAGA
1 AAATGTTAATCCCTCAAGTGAGGCGTTACTGATTCAAAATACCGTGAATCGAGAAAAGA
* *
568483 AAATGTTGATCCCTCAAGTGAGGCGTTGCTGATTCAAAATACCGTGAATCGAG
1 AAATGTTAATCCCTCAAGTGAGGCGTTACTGATTCAAAATACCGTGAATCGAG
568536 CAATAGGAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (59 bp):
AAATGTTAATCCCTCAAGTGAGGCGTTACTGATTCAAAATACCGTGAATCGAGAAAAGA
Found at i:568615 original size:41 final size:39
Alignment explanation
Indices: 568570--568682 Score: 100
Period size: 41 Copynumber: 2.7 Consensus size: 39
568560 TCTTGAATGT
*
568570 CTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAAA
1 CTTAT-GATGGCCCGAAGGACTTATCATCATGCTCG-AAAA
** * * * *
568611 CTTATAGATAACCCAAAGGATTTAAACATCATGCTCGAAGA
1 CTTAT-GATGGCCCGAAGGACTT-ATCATCATGCTCGAAAA
*
568652 CTTACTGATGGCCCGAATGACTTACTCATCA
1 CTTA-TGATGGCCCGAAGGACTTA-TCATCA
568683 AGAAACCCTT
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
40 1 0.02
41 42 0.76
42 12 0.22
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (39 bp):
CTTATGATGGCCCGAAGGACTTATCATCATGCTCGAAAA
Found at i:568973 original size:108 final size:110
Alignment explanation
Indices: 568734--569012 Score: 318
Period size: 108 Copynumber: 2.5 Consensus size: 110
568724 TTACATTTAT
* * * *
568734 CATCAAGAAACCCCTAAAAATTAGGCTTAGATTCTTTTAAAAATTCATTGGAAGTAATCATCAAG
1 CATCAAGAAACCCCT-AAAATTAGGCTTAGCTTCTTTTAAAAA-TC-TTTGAAATCATCATCAAG
* *
568799 AAACCCCTGAAAATCATGCTTAGCTTATTTAAAAATTCATTGGAAATA
63 AAACCCCTGAAAATCAGGCTTAGCTTATCTAAAAATTCATTGGAAATA
*
568847 -ATCATAAAAACCCCTAAAATTAGGCTTAGCTTCTTTTAAAAATCTTTAGAAATCATCATCAAGA
1 CATCA-AGAAACCCCTAAAATTAGGCTTAGCTTCTTTTAAAAATCTTT-GAAATCATCATCAAGA
** * *
568911 AACTTCTG-AAATTAGGCTTAG-TT-TCTAAAAATCTCATTTGAAA-A
64 AACCCCTGAAAATCAGGCTTAGCTTATCTAAAAAT-TCATTGGAAATA
* * * *
568955 CATCAAGAAACCCCTAAAATTAAGTTTAGCTTC-TTTCAAAATCATTTGAAAACATCAT
1 CATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTTAAAAATC-TTTGAAATCATCAT
569013 ATTGCTTAGG
Statistics
Matches: 145, Mismatches: 16, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
107 19 0.13
108 37 0.26
109 15 0.10
110 13 0.09
111 22 0.15
112 30 0.21
113 9 0.06
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.32
Consensus pattern (110 bp):
CATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTTAAAAATCTTTGAAATCATCATCAAGAAA
CCCCTGAAAATCAGGCTTAGCTTATCTAAAAATTCATTGGAAATA
Found at i:571216 original size:2 final size:2
Alignment explanation
Indices: 571209--571238 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
571199 ACAACAACGG
571209 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
571239 TTGATAGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:575960 original size:31 final size:31
Alignment explanation
Indices: 575922--576072 Score: 247
Period size: 31 Copynumber: 5.0 Consensus size: 31
575912 GGGTCGAGGG
575922 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
575953 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
575984 TTACCTATGTTCTTCGGGACATAT-GACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
576014 TTACCTATGTTCTTC-GGAC-TATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
576043 TTACCTAGGTTCTTCGGAATC-TATGGACTG
1 TTACCTATGTTCTTCGGGA-CATATGGACTG
576073 GTCCTTTGGG
Statistics
Matches: 115, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
28 3 0.03
29 24 0.21
30 23 0.20
31 65 0.57
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:580313 original size:31 final size:31
Alignment explanation
Indices: 580275--580397 Score: 212
Period size: 31 Copynumber: 4.0 Consensus size: 31
580265 GGGTCGAGGG
580275 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
580306 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
580337 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
580368 TTACCTAGGTTCTTCGGAATC-TATGGACTG
1 TTACCTATGTTCTTCGGGA-CATATGGACTG
580398 GTCCTTTGGG
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
31 88 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:591994 original size:45 final size:46
Alignment explanation
Indices: 591905--591995 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 46
591895 TAGTATTATT
* * * *
591905 TTATTTTTCAAATAAATGCATGCGAACTAGAAATCATGTGGTTAGG
1 TTATTTTTCAAACAAATGCATGCGAACTAAAAAGCATGAGGTTAGG
591951 TTATTTTTCCAAACAAA-GCATG-GAACTAAAAAGCATGAGGTTAGG
1 TTATTTTT-CAAACAAATGCATGCGAACTAAAAAGCATGAGGTTAGG
591996 ATATGATTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
45 20 0.50
46 13 0.32
47 7 0.17
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (46 bp):
TTATTTTTCAAACAAATGCATGCGAACTAAAAAGCATGAGGTTAGG
Found at i:598054 original size:46 final size:48
Alignment explanation
Indices: 597949--598056 Score: 114
Period size: 46 Copynumber: 2.3 Consensus size: 48
597939 ATCTTAACTC
* * *
597949 CACAAAAGAATAGT-GAAATGAATTTTTTTAGCAAAGTATGAAATCGT
1 CACAAAAGAGTAGTGGAAAAGAATTTTTTCAGCAAAGTATGAAATCGT
** * * * *
597996 CACGGAATAGTAGTGGAAAAG-A-TTTTTCAGCAAATTATGGAATCTT
1 CACAAAAGAGTAGTGGAAAAGAATTTTTTCAGCAAAGTATGAAATCGT
598042 CACAAAAGAGTAGTG
1 CACAAAAGAGTAGTG
598057 AATCAATCCA
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
46 32 0.67
47 11 0.23
48 5 0.10
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (48 bp):
CACAAAAGAGTAGTGGAAAAGAATTTTTTCAGCAAAGTATGAAATCGT
Found at i:599681 original size:22 final size:21
Alignment explanation
Indices: 599643--599683 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
599633 AGTTTTGTAG
*
599643 TTTTTTAATTTGGTTTTAGCA
1 TTTTTTAATTTGATTTTAGCA
*
599664 TTTTTTATATTTTATTTTAG
1 TTTTTTA-ATTTGATTTTAG
599684 TCCTTATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.20, C:0.02, G:0.10, T:0.68
Consensus pattern (21 bp):
TTTTTTAATTTGATTTTAGCA
Found at i:600952 original size:60 final size:59
Alignment explanation
Indices: 600846--600981 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 59
600836 ATATCTACGT
* * *
600846 ATAGTTTGGGATGAAATTGGAATGTTCAAAAAGTTTGGGACCAATTTAGAATGAAGCTC
1 ATAGTTTGGGATGAAATTGAAATGTTCAAAAACTTTGGGACCAATTTAAAATGAAGCTC
** *
600905 ATAGTTTGGGAATGAAATT-AATATGTTC-AAAACTTTGAGGATTAATTTAAAATGATAG-TT
1 ATAGTTTGGG-ATGAAATTGAA-ATGTTCAAAAACTTTG-GGACCAATTTAAAATGA-AGCTC
*
600965 ATAATTTAGGGATGAAA
1 ATAGTTT-GGGATGAAA
600982 ATAAAATATT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
59 19 0.29
60 41 0.63
61 5 0.08
ACGTcount: A:0.39, C:0.05, G:0.22, T:0.34
Consensus pattern (59 bp):
ATAGTTTGGGATGAAATTGAAATGTTCAAAAACTTTGGGACCAATTTAAAATGAAGCTC
Found at i:601574 original size:22 final size:23
Alignment explanation
Indices: 601541--601585 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
601531 ATTTGAGGTA
*
601541 AGAGTTTTAGGGTTTATTATTTT
1 AGAGTTTTAGGGTTTATGATTTT
601564 AGAG-TTTAGGGTTTATGATTTT
1 AGAGTTTTAGGGTTTATGATTTT
601586 TTATTATGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.53
Consensus pattern (23 bp):
AGAGTTTTAGGGTTTATGATTTT
Found at i:613486 original size:24 final size:24
Alignment explanation
Indices: 613450--613504 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
613440 ATTTTTTTGA
613450 TTATTT-TTCTTTT-TTACTAACTT
1 TTATTTATTCTTTTGTTACTAAC-T
* * *
613473 TTATTTATTGTTTTGTTATTTACT
1 TTATTTATTCTTTTGTTACTAACT
613497 TTATTTAT
1 TTATTTAT
613505 CATTATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 6 0.22
24 15 0.56
25 6 0.22
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (24 bp):
TTATTTATTCTTTTGTTACTAACT
Found at i:615383 original size:3 final size:3
Alignment explanation
Indices: 615375--615403 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
615365 GTGCATTTTG
615375 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
615404 TTTTTACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:618258 original size:106 final size:106
Alignment explanation
Indices: 617424--618246 Score: 1391
Period size: 106 Copynumber: 7.8 Consensus size: 106
617414 GGGTCGCTCA
* *
617424 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAAC-ATTTCTCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
617488 CAGAGCCAATTTCAACTTCACAACG-AGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
617528 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
*
617593 CTGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
617634 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
*
617699 CTGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
617740 AGACAACGCAAGTTCAACTTTACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCTCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
*
617805 TAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
617846 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTAAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
617911 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * *
617952 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
618017 CAAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
66 C-AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * * *
618059 AGACAACGCAAGTTTAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
* * * *
618124 CAGAGTCAATTTAAACTTCACAGCGAAGGATATTGGACTCA
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* * *
618165 AGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA-TTTTCCAGTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT-CAATT
* *
618229 CCAGAACCAATTTCAACT
65 TCAGAGCCAATTTCAACT
618247 CTACGACGAA
Statistics
Matches: 685, Mismatches: 30, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
104 51 0.07
105 37 0.05
106 492 0.72
107 105 0.15
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTT
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
Found at i:618258 original size:319 final size:318
Alignment explanation
Indices: 617424--618246 Score: 1427
Period size: 319 Copynumber: 2.6 Consensus size: 318
617414 GGGTCGCTCA
617424 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAAC-ATTTCTCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCTCAATTT
617488 CAGAGCCAATTTCAACTTCACAACG-AGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
617552 ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCTGAGCCAATTTCAACTTCACAAC
131 ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
617617 GAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
196 GAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
* *
617682 AAACAACTTCTCAATTTCTGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
261 AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
617740 AGACAACGCAAGTTCAACTTTACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCTCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCTCAATTT
*
617805 TAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
617870 ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTAAATTTCAGAGCCAATTTCAACTTCACAAC
131 ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
*
617935 GAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT
196 GAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
*
618000 AAACAATTTCCCAATTTCAAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
261 AAACAACTTCCCAATTTC-AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
618059 AGACAACGCAAGTTTAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTT
1 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCTCAATTT
* * * * *
618124 CAGAGTCAATTTAAACTTCACAGCGAAGGATATTGGACTCAAGACAATGCAAGTTCAACTTCACG
66 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * * *
618189 ACGAAGGGACCGCTGGTTGTCAACAAACAA-TTTTCCAGTTCCAGAACCAATTTCAACT
131 ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT-CAATTTCAGAGCCAATTTCAACT
618247 CTACGACGAA
Statistics
Matches: 479, Mismatches: 24, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
316 51 0.11
317 35 0.07
318 185 0.39
319 208 0.43
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (318 bp):
AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCTCAATTT
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
GAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
AAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
Found at i:618684 original size:36 final size:36
Alignment explanation
Indices: 618639--618743 Score: 183
Period size: 36 Copynumber: 2.9 Consensus size: 36
618629 GAAACTAAAG
*
618639 ATTTTGTCTCTCTTGAGACAATTTCTCTTGAAACAA
1 ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAA
*
618675 ATTTTGTCTCTCTTGAGACGGTTTCTCTTGAAACAA
1 ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAA
*
618711 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAA
1 ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAA
618744 TACCAACCAA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.42
Consensus pattern (36 bp):
ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAA
Found at i:618687 original size:21 final size:21
Alignment explanation
Indices: 618662--618726 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 21
618652 TGAGACAATT
618662 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
* * *
618683 TCTCTTGAGAC------GGTT
1 TCTCTTGAAACAAATTTTGTC
618698 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAACAAATTTTGTC
618719 TCTCTTGA
1 TCTCTTGA
618727 GACAGTTTCC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
15 12 0.38
21 20 0.62
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (21 bp):
TCTCTTGAAACAAATTTTGTC
Found at i:620368 original size:24 final size:24
Alignment explanation
Indices: 620332--620386 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
620322 ATTTTTTTGA
620332 TTATTT-TTCTTTT-TTACTAACTT
1 TTATTTATTCTTTTGTTACTAAC-T
* * *
620355 TTATTTATTGTTTTGTTATTTACT
1 TTATTTATTCTTTTGTTACTAACT
620379 TTATTTAT
1 TTATTTAT
620387 CATTATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 6 0.22
24 15 0.56
25 6 0.22
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (24 bp):
TTATTTATTCTTTTGTTACTAACT
Found at i:625516 original size:158 final size:160
Alignment explanation
Indices: 625209--625529 Score: 592
Period size: 158 Copynumber: 2.0 Consensus size: 160
625199 AATCCTTGGT
*
625209 TTTCGGTTTGATTTTCATTGAGCTTCATTTAAGTTGAACTCCTTTGACTGCTTACTTTTGCTTCA
1 TTTCGGTTTGATTTTCATTGAGCTTCATGTAAGTTGAACTCCTTTGACTGCTTACTTTTGCTTCA
625274 AAGTATCTGTTCCTGATTTTCCTTTGATCTTGTTGATCTTATGAGGTTAGAGATATAAATGTTTT
66 AAGTATCTGTTCCTGATTTTCCTTTGATCTTGTTGATCTTATGAGGTTAGAGATATAAATGTTTT
625339 GGAGGAGTTTTCAATGGCTTTATGTTCTTG
131 GGAGGAGTTTTCAATGGCTTTATGTTCTTG
625369 TTTCGGTTTGATTTTCA-TGAGCTTCATGTAAGTTGAACTCCTTTGACTGCTTAC-TTTGCTTCA
1 TTTCGGTTTGATTTTCATTGAGCTTCATGTAAGTTGAACTCCTTTGACTGCTTACTTTTGCTTCA
* * *
625432 AAGTATCTGTTTCTGATTTTCCTTTGATTTTGTTGATCTTATGAGGTTAGAGATATGAATGTTTT
66 AAGTATCTGTTCCTGATTTTCCTTTGATCTTGTTGATCTTATGAGGTTAGAGATATAAATGTTTT
625497 GGAGGAGTTTTCAATGGCTTTATGTTCTTG
131 GGAGGAGTTTTCAATGGCTTTATGTTCTTG
625527 TTT
1 TTT
625530 TAATAGCATT
Statistics
Matches: 157, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
158 104 0.66
159 36 0.23
160 17 0.11
ACGTcount: A:0.19, C:0.13, G:0.20, T:0.48
Consensus pattern (160 bp):
TTTCGGTTTGATTTTCATTGAGCTTCATGTAAGTTGAACTCCTTTGACTGCTTACTTTTGCTTCA
AAGTATCTGTTCCTGATTTTCCTTTGATCTTGTTGATCTTATGAGGTTAGAGATATAAATGTTTT
GGAGGAGTTTTCAATGGCTTTATGTTCTTG
Found at i:629685 original size:106 final size:106
Alignment explanation
Indices: 629500--631496 Score: 3700
Period size: 106 Copynumber: 18.9 Consensus size: 106
629490 CAACCTCGAG
*
629500 CATAGTGGATTTTGTAACATCTTACACAAAAAACGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
629565 GATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
629606 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
629671 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
* *
629712 CATAGTGGGTTTTGTAACATC-TACACAAAAATCAAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
629776 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
629817 CATAGTGGGTTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
629882 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
629923 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
629988 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
630029 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
630094 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630135 CATAGTGGGTTTTGTAACATC-TACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
630199 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630240 CATAGTGG-GTTTGTAACATCTTACACAAAAATCGAAAAAACAACTATTTTTATGTAACTTCAAT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCG-AAAAACAACTATTTTTATGTAACTTCAAT
630304 TAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
65 TAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630346 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
630411 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
630452 CATAGTGGATTTTGTAACATCTTACAC-AAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
630516 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630557 CATAGTGGGTTTTGTAACATC-TACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
630621 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
* *
630662 CATAGTGGGTTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
630727 AATAATTTCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630768 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
630833 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630874 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAAACAACTATTTTTATGCAACTTCAAT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCG-AAAAACAACTATTTTTATGTAACTTCAAT
630939 TAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
65 TAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630981 CATAGTGGATTTTGTAACATCTTACACAAAAATTGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
631046 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
631087 CATAGTGGGTTTTGTAACATC-TACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
631151 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
631192 CATAGTGGGTTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
631257 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
631298 CATAGTGGGTTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
631363 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
631404 CATAGTGGATTTTGTAACATCTTACACAAAAACCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
631469 AATAATTCCATGGAATATGTTGTAACTT
66 AATAATTCCATAGAATATGTTGTAACTT
631497 GTAGCCTTAA
Statistics
Matches: 1850, Mismatches: 33, Indels: 16
0.97 0.02 0.01
Matches are distributed among these distances:
104 16 0.01
105 505 0.27
106 1199 0.65
107 130 0.07
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (106 bp):
CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
Found at i:629865 original size:211 final size:212
Alignment explanation
Indices: 629500--631496 Score: 3709
Period size: 211 Copynumber: 9.4 Consensus size: 212
629490 CAACCTCGAG
*
629500 CATAGTGGATTTTGTAACATCTTACACAAAAAACGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
* *
629565 GATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
629630 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
629695 ACTTCAATTAATAATTC
196 ACTTCAATTAATAATTC
* *
629712 CATAGTGGGTTTTGTAACATC-TACACAAAAATCAAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
629776 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTCCATAGTGGGTTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
629841 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
629906 ACTTCAATTAATAATTC
196 ACTTCAATTAATAATTC
*
629923 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
629988 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
630053 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
630118 ACTTCAATTAATAATTC
196 ACTTCAATTAATAATTC
*
630135 CATAGTGGGTTTTGTAACATC-TACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
630199 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTCCATAGTGGG-TTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
630263 CACAAAAATCGAAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGT
131 CACAAAAATCG-AAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGT
630328 AACTTCAATTAATAATTC
195 AACTTCAATTAATAATTC
*
630346 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
630411 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
630476 CAC-AAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
630540 ACTTCAATTAATAATTC
196 ACTTCAATTAATAATTC
*
630557 CATAGTGGGTTTTGTAACATC-TACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
630621 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTCCATAGTGGGTTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
* *
630686 CACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATTAATAATTTCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
630751 ACTTCAATTAATAATTC
196 ACTTCAATTAATAATTC
*
630768 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
630833 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
*
630898 CACAAAAATCGAAAAAACAACTATTTTTATGCAACTTCAATTAATAATTCCATAGAATATGTTGT
131 CACAAAAATCG-AAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGT
630963 AACTTCAATTAATAATTC
195 AACTTCAATTAATAATTC
*
630981 CATAGTGGATTTTGTAACATCTTACACAAAAATTGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
631046 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATC-TA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
631110 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
*
631175 ACTTCAATCAATAATTC
196 ACTTCAATTAATAATTC
*
631192 CATAGTGGGTTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
631257 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTCCATAGTGGGTTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
631322 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
631387 ACTTCAATTAATAATTC
196 ACTTCAATTAATAATTC
*
631404 CATAGTGGATTTTGTAACATCTTACACAAAAACCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
631469 AATAATTCCATGGAATATGTTGTAACTT
66 AATAATTCCATAGAATATGTTGTAACTT
631497 GTAGCCTTAA
Statistics
Matches: 1735, Mismatches: 42, Indels: 16
0.97 0.02 0.01
Matches are distributed among these distances:
210 133 0.08
211 766 0.44
212 625 0.36
213 211 0.12
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (212 bp):
CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATCTTA
CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
ACTTCAATTAATAATTC
Found at i:630162 original size:317 final size:318
Alignment explanation
Indices: 629500--631496 Score: 3700
Period size: 317 Copynumber: 6.3 Consensus size: 318
629490 CAACCTCGAG
*
629500 CATAGTGGATTTTGTAACATCTTACACAAAAAACGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
629565 GATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
629630 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
* *
629695 ACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATC-TACACAAAAATCAAAAAACAACTATT
196 ACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATT
*
629759 TTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTC
261 TTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
629817 CATAGTGGGTTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
629882 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
*
629947 CACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
630012 ACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATT
196 ACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATT
630077 TTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
261 TTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630135 CATAGTGGGTTTTGTAACATC-TACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
* *
630199 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTCCATAGTGG-GTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
630263 CACAAAAATCGAAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGT
131 CACAAAAATCG-AAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGT
630328 AACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTAT
195 AACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTAT
*
630393 TTTTATGCAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
260 TTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
630452 CATAGTGGATTTTGTAACATCTTACAC-AAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
630516 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGGTTTTGTAACATC-TA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
630580 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
* *
630645 ACTTCAATCAATAATTCCATAGTGGGTTTTGTAACATCTTACACAAAAATCGAAAAACAACTATT
196 ACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATT
* *
630710 TTTATGCAACTTCAATTAATAATTTCATAGAATATGTTGTAACTTCAATTAATAATTC
261 TTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
630768 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGCAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
630833 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
*
630898 CACAAAAATCGAAAAAACAACTATTTTTATGCAACTTCAATTAATAATTCCATAGAATATGTTGT
131 CACAAAAATCG-AAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGT
*
630963 AACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATTGAAAAACAACTAT
195 AACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTAT
631028 TTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
260 TTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
631087 CATAGTGGGTTTTGTAACATC-TACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
* *
631151 AATAATTCCATAGAATATGTTGTAACTTCAATCAATAATTCCATAGTGGGTTTTGTAACATCTTA
66 AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
631216 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
131 CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
* *
631281 ACTTCAATCAATAATTCCATAGTGGGTTTTGTAACATCTTACACAAAAATCGAAAAACAACTATT
196 ACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATT
631346 TTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
261 TTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
*
631404 CATAGTGGATTTTGTAACATCTTACACAAAAACCGAAAAACAACTATTTTTATGTAACTTCAATT
1 CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
*
631469 AATAATTCCATGGAATATGTTGTAACTT
66 AATAATTCCATAGAATATGTTGTAACTT
631497 GTAGCCTTAA
Statistics
Matches: 1636, Mismatches: 36, Indels: 15
0.97 0.02 0.01
Matches are distributed among these distances:
316 226 0.14
317 902 0.55
318 317 0.19
319 191 0.12
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (318 bp):
CATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATT
AATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTA
CACAAAAATCGAAAAACAACTATTTTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTA
ACTTCAATTAATAATTCCATAGTGGATTTTGTAACATCTTACACAAAAATCGAAAAACAACTATT
TTTATGTAACTTCAATTAATAATTCCATAGAATATGTTGTAACTTCAATTAATAATTC
Found at i:649406 original size:18 final size:18
Alignment explanation
Indices: 649380--649414 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
649370 AATGGTCCTT
*
649380 CTTGGTAGCCTTATTGAA
1 CTTGATAGCCTTATTGAA
649398 CTTGATAGCCTTATTGA
1 CTTGATAGCCTTATTGA
649415 TCAAGCATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (18 bp):
CTTGATAGCCTTATTGAA
Found at i:655270 original size:77 final size:77
Alignment explanation
Indices: 655182--655337 Score: 287
Period size: 77 Copynumber: 2.0 Consensus size: 77
655172 ACGGTCACAC
*
655182 ACACTATAAGAAAGGCGAAAACAACA-ACAACAACAATCGCAGTAATCAGAATCCAATCCAAAAC
1 ACACTATAAGAAAGGCGAAAACAACAGA-AACAACAATCACAGTAATCAGAATCCAATCCAAAAC
655246 TTAATATGGAGAA
65 TTAATATGGAGAA
655259 ACACTATAAGAAAGGCGAAAACAACAGAAACAACAATCACAGTAATCAGAATCCAATCCAAAACT
1 ACACTATAAGAAAGGCGAAAACAACAGAAACAACAATCACAGTAATCAGAATCCAATCCAAAACT
655324 TAATATGGAGAA
66 TAATATGGAGAA
655336 AC
1 AC
655338 CATTAGACTC
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
77 76 0.99
78 1 0.01
ACGTcount: A:0.53, C:0.21, G:0.13, T:0.14
Consensus pattern (77 bp):
ACACTATAAGAAAGGCGAAAACAACAGAAACAACAATCACAGTAATCAGAATCCAATCCAAAACT
TAATATGGAGAA
Found at i:660971 original size:911 final size:910
Alignment explanation
Indices: 659212--661949 Score: 5109
Period size: 911 Copynumber: 3.0 Consensus size: 910
659202 CTTGCACGTG
659212 TTTTGCAAAATATTCACCTGTAGGGATCGATTCTATAATTTACCCACTTTTGTGCATGTTATATA
1 TTTTG-AAAATATTCACCTGTAGGGATCGATTCTATAATTTACCCACTTTTGTGCATGTTATATA
* *
659277 TTTTTATGGTTATTTGCATTTTAATCCCCCCATGTTTAGCTTTTTTTACATTTTAGTCATGTGTA
65 TTTTTATGGTTATTTGCGTTTTAATCCCTCCATGTTTAGCTTTTTTTACATTTTAGTCATGTGTA
659342 GTGATGATTTAATTTTTTAAAATACTTCTGGACTGATTTAGTAATTTAATCATTTTTTAGAAGCA
130 GTGATGATTTAATTTTTTAAAATACTTCTGGACTGATTTAGTAATTTAATCA-TTTTTAGAAGCA
* *
659407 TGATTTAGTCTCATAGGAAAGGAATAATTAGTAAATAGTCCCTGTAAATTTTGAACTATAATATT
194 TGATTTAGTCTCATAGAAAAGGAATAATTAGGAAATAGTCCCTGTAAATTTTGAACTATAATATT
*
659472 TTTTATTTAATTTAATTTGGCCATGCAAATTTTTTTATTTCAATTTGGTCCCCATGTTTTATTTA
259 TTTTATTTAATTTAATTTGGTCATGC-AATTTTTTTATTTCAATTTGGTCCCCATGTTTTATTTA
*
659537 ATTTTATCCTTTGTAATTTTAGCACTTAATATTAAAAATGTTCA---T--T---TTTTACACTTT
323 TTTTTATCCTTTGTAATTTTAGCACTTAATATTAAAAATGTTCATTTTAGTCACTTTTACACTTT
*
659594 ATTTTCTTTTAATTTTTGACTTGATGATTTGATTGTTTATATTTTAGTCCTATTTTCATTTTATT
388 ATTTTCTTTTAATTTTTGACATGATGATTTGATTGTTTATATTTTAGTCCTATTTTCATTTTATT
659659 TTATTCTAATTTTTGCATGTTATTTCATTTTAGTCATTAATTGATTTTGCATGATACCCTCATAA
453 TTATTCTAATTTTTGCATGTTATTTCATTTTAGTCATTAATTGATTTTGCATGATACCCTCATAA
659724 GCATTTCTTTCGAATCAAAATAATTTGACTAGGGTAATATTCGTTCATTTTAATATTGTCGTAAA
518 GCATTTCTTTCGAATCAAAATAATTTGACTAGGGTAATATTCGTTCATTTTAATATTGTCGTAAA
*
659789 GTGACTGTCTTAATGTATAACAAAGTTATTTTCGATAGTTTTAAAATGAAAGTCTATCCCACTTA
583 GTGACTATCTTAATGTATAACAAAGTTATTTTCGATAGTTTTAAAATGAAAGTCTATCCCACTTA
659854 GTGACACGAATTAAATTGAATCCATTTTAAAATTTGGTGATTGGGAAAAAGATTATGTTCTTTTA
648 GTGACACGAATTAAATTGAATCCATTTTAAAATTTGGTGATTGGGAAAAAGATTATGTTCTTTTA
* *
659919 ATTAAATTCACAGAGAAAAGACTGTTAGATCAAATCTAAGTTCTTGTCTCGACGTATTTAAATAA
713 ATTAAATTCACCGAGAAAAGACTGTTAGATCAAATCTAAGTTCTCGTCTCGACGTATTTAAATAA
659984 TTGAACATCCTTATTCTCTTTAAGTATTGGTAAAATAAATAATTAATTGTACTTGCTTGGGGTAT
778 TTGAACATCCTTATTCTCTTTAAGTATTGGTAAAATAAATAATTAATTGTACTTGCTTGGGGTAT
660049 GCTTTTAATTTGCTTTATTTTTGCATGTGTTTTCCAATGGGTTATCAAAGTAGTAACACTCGAAT
843 GCTTTTAATTTGCTTTATTTTTGCATGTGTTTTCCAATGGGTTATCAAAGTAGTAACACTCGAAT
660114 CGA
908 CGA
660117 TTTTGAAAATATTCACCTGTAGGGATCGATTCTATAATTTACCCACTTTTGTGCATAG-TATATA
1 TTTTGAAAATATTCACCTGTAGGGATCGATTCTATAATTTACCCACTTTTGTGCAT-GTTATATA
*
660181 TTTTTATGGTTATTTGCGTTTTAATCCCTCCATGTTTAGCTTTTTTTACAATTTAGTCATGTGTA
65 TTTTTATGGTTATTTGCGTTTTAATCCCTCCATGTTTAGCTTTTTTTACATTTTAGTCATGTGTA
*
660246 GTGATGATTTAATTTTTTAAAATACTTCTGGATTGATTTAGTAATTTAATCATTTTTAGAAGCAT
130 GTGATGATTTAATTTTTTAAAATACTTCTGGACTGATTTAGTAATTTAATCATTTTTAGAAGCAT
*
660311 GATTTAGTCTCATAGAAAATGAATAATTAGGAAATAGTCCCTGTAAATTTTGAACTATAATATTT
195 GATTTAGTCTCATAGAAAAGGAATAATTAGGAAATAGTCCCTGTAAATTTTGAACTATAATATTT
660376 TTTATTTAATTTAATTTGGTCATGCAATTTTTTTTATTTCAATTTGGTCCCCATGTTTTATTTAT
260 TTTATTTAATTTAATTTGGTCATGCAA-TTTTTTTATTTCAATTTGGTCCCCATGTTTTATTTAT
660441 TTTTATCCTTTGTAATTTTAGCACTTAATATTAAAAATGTTCATTTTAGTCACTTTTACACTTTA
324 TTTTATCCTTTGTAATTTTAGCACTTAATATTAAAAATGTTCATTTTAGTCACTTTTACACTTTA
660506 TTTTCTTTTAATTTTTGACATGATGATTTGATTGTTTATATTTTAGTCCTATTTTCATTTTATTT
389 TTTTCTTTTAATTTTTGACATGATGATTTGATTGTTTATATTTTAGTCCTATTTTCATTTTATTT
660571 TATTCTAATTTTTGCATGTTATTTCATTTTAGTCATTAATTGATTTTGCATGATACCCTCATAAG
454 TATTCTAATTTTTGCATGTTATTTCATTTTAGTCATTAATTGATTTTGCATGATACCCTCATAAG
* *
660636 CATTTCTTTCGAATTAAAATAATTTGACTAGGGTAATATTCATTCATTTTAATATTGTCGTAAAG
519 CATTTCTTTCGAATCAAAATAATTTGACTAGGGTAATATTCGTTCATTTTAATATTGTCGTAAAG
660701 TGACTATCTTAATGTATAACAAAGTTATTTTCGATAGTTTTAAAATGAAAGTCTATCCCACTTAG
584 TGACTATCTTAATGTATAACAAAGTTATTTTCGATAGTTTTAAAATGAAAGTCTATCCCACTTAG
660766 TGACACGAATTAAATTGAATCCATTTTAAAATTTGGTGATTGGGAAAAAGATTATGTTCTTTTAA
649 TGACACGAATTAAATTGAATCCATTTTAAAATTTGGTGATTGGGAAAAAGATTATGTTCTTTTAA
*
660831 TTAAATTCACCGAGAAAAGACTGTTAGATCAAATCTAAGTTCTCATCTCGACGTATTTAAATAAT
714 TTAAATTCACCGAGAAAAGACTGTTAGATCAAATCTAAGTTCTCGTCTCGACGTATTTAAATAAT
660896 TGAACATCCTTATTCTCTTTAAGTATTGGTAAAATAAATAATTAATTGTACTTGCTTGGGGTATG
779 TGAACATCCTTATTCTCTTTAAGTATTGGTAAAATAAATAATTAATTGTACTTGCTTGGGGTATG
660961 CTTTTAATTTGCTTTATTTTTGCATGTGTTTTCCAATGGGTTATCAAAGTAGTAACACTCGAATC
844 CTTTTAATTTGCTTTATTTTTGCATGTGTTTTCCAATGGGTTATCAAAGTAGTAACACTCGAATC
661026 GA
909 GA
*
661028 TTTTGAAAATATTCACCTGTAGGGATCGATTCTATAATTTACCCACTTTTGTGCATGTTCTATAT
1 TTTTGAAAATATTCACCTGTAGGGATCGATTCTATAATTTACCCACTTTTGTGCATGTTATATAT
* *
661093 TTTTATGGTTATTTTCGTTTTAATCCCTCCATGTTTAGTTTTTTTTTACATTTTAGTCATGTGTA
66 TTTTATGGTTATTTGCGTTTTAATCCCTCCATGTTTAG-CTTTTTTTACATTTTAGTCATGTGTA
*
661158 GTGATGATTTAATTGTTTAAAATACTTCTGGACTGATTTAGTAATTTAATCATTTTTAGAAGCAT
130 GTGATGATTTAATTTTTTAAAATACTTCTGGACTGATTTAGTAATTTAATCATTTTTAGAAGCAT
*
661223 GATTTAGTCTCATAGAAAAGGAATAATTAGGAAATAGTCCCTTTAAATTTTGAACTATAATATTT
195 GATTTAGTCTCATAGAAAAGGAATAATTAGGAAATAGTCCCTGTAAATTTTGAACTATAATATTT
*
661288 TTTATTTAATTTAATTTGGTCATGCAATTTTTTTATTTCAATTTGGTTCCCATGTTTTATTTATT
260 TTTATTTAATTTAATTTGGTCATGCAATTTTTTTATTTCAATTTGGTCCCCATGTTTTATTTATT
661353 TTTATCCTTTGTAATTTTAGCACTTAATATTAAAAATGTTCATTTTAGTCACTTTTACACTTTAT
325 TTTATCCTTTGTAATTTTAGCACTTAATATTAAAAATGTTCATTTTAGTCACTTTTACACTTTAT
661418 TTTCTTTTAATTTTTGACATGATGATTTGATTGTTTATATTTTAGTCCTATTTTCATTTTATTTT
390 TTTCTTTTAATTTTTGACATGATGATTTGATTGTTTATATTTTAGTCCTATTTTCATTTTATTTT
661483 ATTCTAATTTTTGCATGTTATTTCATTTTAGTCATTAATTGATTTTGCATGATACCCTCATAAGC
455 ATTCTAATTTTTGCATGTTATTTCATTTTAGTCATTAATTGATTTTGCATGATACCCTCATAAGC
661548 ATTTCTTTCGAATCAAAATAATTTGACTAGGGTAATATTCGTTCATTTTAATATTGTCGTAAAGT
520 ATTTCTTTCGAATCAAAATAATTTGACTAGGGTAATATTCGTTCATTTTAATATTGTCGTAAAGT
*
661613 GACTATCTTAATGTATAACAAAGTTATTTTCGATAGTTTTAAAATGAAAGTCTATCCCACTTAGC
585 GACTATCTTAATGTATAACAAAGTTATTTTCGATAGTTTTAAAATGAAAGTCTATCCCACTTAGT
661678 GACACGAATTAAATTGAATCCATTTTAAAATTTGGTGATTGGGAAAAAG-TTAATGTTCTTTTAA
650 GACACGAATTAAATTGAATCCATTTTAAAATTTGGTGATTGGGAAAAAGATT-ATGTTCTTTTAA
* *
661742 TTAAATTCACCGAGAAAAGACTGTTAGATCAAATCTAAGTTCTCGTCTTGACGCATTTAAATAAT
714 TTAAATTCACCGAGAAAAGACTGTTAGATCAAATCTAAGTTCTCGTCTCGACGTATTTAAATAAT
*
661807 TGAACATCCTTATTCTCATTAAGTATTGGTAAAATAAATAATTAATTGTACTTGCTTGGGGTATG
779 TGAACATCCTTATTCTCTTTAAGTATTGGTAAAATAAATAATTAATTGTACTTGCTTGGGGTATG
661872 CTTTTAATTTGCTTTATTTTTGCATGTGTTTTCCAATGGGTTATCAAAGTAGTAACACTCGAATC
844 CTTTTAATTTGCTTTATTTTTGCATGTGTTTTCCAATGGGTTATCAAAGTAGTAACACTCGAATC
661937 GA
909 GA
661939 TTTTGAAAATA
1 TTTTGAAAATA
661950 GTAACATCTC
Statistics
Matches: 1788, Mismatches: 32, Indels: 20
0.97 0.02 0.01
Matches are distributed among these distances:
902 2 0.00
903 178 0.10
904 170 0.10
905 6 0.00
906 1 0.00
908 1 0.00
910 3 0.00
911 1250 0.70
912 177 0.10
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.46
Consensus pattern (910 bp):
TTTTGAAAATATTCACCTGTAGGGATCGATTCTATAATTTACCCACTTTTGTGCATGTTATATAT
TTTTATGGTTATTTGCGTTTTAATCCCTCCATGTTTAGCTTTTTTTACATTTTAGTCATGTGTAG
TGATGATTTAATTTTTTAAAATACTTCTGGACTGATTTAGTAATTTAATCATTTTTAGAAGCATG
ATTTAGTCTCATAGAAAAGGAATAATTAGGAAATAGTCCCTGTAAATTTTGAACTATAATATTTT
TTATTTAATTTAATTTGGTCATGCAATTTTTTTATTTCAATTTGGTCCCCATGTTTTATTTATTT
TTATCCTTTGTAATTTTAGCACTTAATATTAAAAATGTTCATTTTAGTCACTTTTACACTTTATT
TTCTTTTAATTTTTGACATGATGATTTGATTGTTTATATTTTAGTCCTATTTTCATTTTATTTTA
TTCTAATTTTTGCATGTTATTTCATTTTAGTCATTAATTGATTTTGCATGATACCCTCATAAGCA
TTTCTTTCGAATCAAAATAATTTGACTAGGGTAATATTCGTTCATTTTAATATTGTCGTAAAGTG
ACTATCTTAATGTATAACAAAGTTATTTTCGATAGTTTTAAAATGAAAGTCTATCCCACTTAGTG
ACACGAATTAAATTGAATCCATTTTAAAATTTGGTGATTGGGAAAAAGATTATGTTCTTTTAATT
AAATTCACCGAGAAAAGACTGTTAGATCAAATCTAAGTTCTCGTCTCGACGTATTTAAATAATTG
AACATCCTTATTCTCTTTAAGTATTGGTAAAATAAATAATTAATTGTACTTGCTTGGGGTATGCT
TTTAATTTGCTTTATTTTTGCATGTGTTTTCCAATGGGTTATCAAAGTAGTAACACTCGAATCGA
Found at i:662185 original size:131 final size:131
Alignment explanation
Indices: 661974--662218 Score: 341
Period size: 131 Copynumber: 1.9 Consensus size: 131
661964 TTTCGGTTAG
* * *
661974 AGTAATAAATTACTGCTTTAAGGCATGAAAGGTCATTTATTCTCGATTGAAAATAATTAGATATT
1 AGTAATAAATGAATGCTTTAACGCATGAAAGGTCATTTATTCTCGATTGAAAATAATTAGATATT
* * * *
662039 ACCGTTTTCTCTCGAATTAATATTG-ATCTTTAAGACT-AAATAGTTATATCTCTTCATTTTGAT
66 ACCATTTACTCTCGAATCAATATTGAAT-TTTAAGA-TGAAATAGTGATATCTCTTCATTTTGAT
662102 TAA
129 TAA
** *
662105 AGTAATAAATGAATGCTTTAACGCATGGGAGGTCATTTATTCTCGATTGTAAATAATTAGATATT
1 AGTAATAAATGAATGCTTTAACGCATGAAAGGTCATTTATTCTCGATTGAAAATAATTAGATATT
** *
662170 ATTATTTACTTTCGAATCAATATTGAATTTTAAGATGAAATAGTGATAT
66 ACCATTTACTCTCGAATCAATATTGAATTTTAAGATGAAATAGTGATAT
662219 ATCCTCTCGA
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
130 1 0.01
131 96 0.97
132 2 0.02
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (131 bp):
AGTAATAAATGAATGCTTTAACGCATGAAAGGTCATTTATTCTCGATTGAAAATAATTAGATATT
ACCATTTACTCTCGAATCAATATTGAATTTTAAGATGAAATAGTGATATCTCTTCATTTTGATTA
A
Found at i:663292 original size:41 final size:41
Alignment explanation
Indices: 663239--663423 Score: 144
Period size: 41 Copynumber: 4.5 Consensus size: 41
663229 GGTTCAACGA
* * * *
663239 TAGTGGCTTTTTTCA-ATAAACGCCGCAAAAGAGTAGTACTT
1 TAGTGGCGTTTTT-ATACAAACGCCGCAAAAGACTAGTAATT
* *
663280 TAGTGGCGTTTTTATACAAACGCCGCTAAAGACTCGTAATT
1 TAGTGGCGTTTTTATACAAACGCCGCAAAAGACTAGTAATT
** * * *
663321 TAGTGGTATTTTTATACAAACGCTGCTATAAA-A-TTGTACTT
1 TAGTGGCGTTTTTATACAAACGCCGC-A-AAAGACTAGTAATT
* ** * * * *
663362 TATTGGCGTTTTTATACAAACGCCGTTATACAC-ATGTACTA
1 TAGTGGCGTTTTTATACAAACGCCGCAAAAGACTA-GTAATT
663403 TAGTGGCGTTTTTATACAAAC
1 TAGTGGCGTTTTTATACAAAC
663424 ACCGTTATAC
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 108 0.93
42 1 0.01
43 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (41 bp):
TAGTGGCGTTTTTATACAAACGCCGCAAAAGACTAGTAATT
Found at i:663429 original size:41 final size:41
Alignment explanation
Indices: 663274--663453 Score: 211
Period size: 41 Copynumber: 4.4 Consensus size: 41
663264 CAAAAGAGTA
* *
663274 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTAAAGAC-T
1 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACAT
* ** * *
663314 CGTAATTTAGTGGTATTTTTATACAAACGCTGCTATA-AAATT
1 -GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACA-T
* *
663356 GTACTTTATTGGCGTTTTTATACAAACGCCGTTATACACAT
1 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACAT
* * *
663397 GTACTATAGTGGCGTTTTTATACAAACACCGTTATACACAT
1 GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACAT
*
663438 GTACTATAGTGGCGTT
1 GTACTTTAGTGGCGTT
663454 GTCAATCCTC
Statistics
Matches: 120, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
40 1 0.01
41 116 0.97
42 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (41 bp):
GTACTTTAGTGGCGTTTTTATACAAACGCCGCTATACACAT
Found at i:665704 original size:80 final size:79
Alignment explanation
Indices: 665593--665756 Score: 249
Period size: 80 Copynumber: 2.1 Consensus size: 79
665583 TTAGATTATG
* *
665593 TTGCAATGAGCAGATGTCTTAAATATTTGTTATAAATTTGATCTGAATGAAAATTGAGAAGTTTA
1 TTGCAATGAGCAGATGTCTTAAATATCTGTTATAAATTTGACCTGAATGAAAATTGAGAAGTTTA
*
665658 GTCCTTCATTTTAC
66 GTCCTTCATATTAC
* * *
665672 TTGCAATTAGCAG-TGGTCTGTAAATATCTGTTATCAATTTGACCTGAATGTAAATTGAGAAGTT
1 TTGCAATGAGCAGAT-GTCT-TAAATATCTGTTATAAATTTGACCTGAATGAAAATTGAGAAGTT
665736 TAGTCCTTCATATTAC
64 TAGTCCTTCATATTAC
665752 TTGCA
1 TTGCA
665757 GGGATTCCGT
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
78 1 0.01
79 16 0.21
80 60 0.78
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (79 bp):
TTGCAATGAGCAGATGTCTTAAATATCTGTTATAAATTTGACCTGAATGAAAATTGAGAAGTTTA
GTCCTTCATATTAC
Found at i:665776 original size:80 final size:78
Alignment explanation
Indices: 665610--665778 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 78
665600 GAGCAGATGT
* * *
665610 CTTAAATATTTGTTATAAATTTGATCTGAATGAAAATTGAGAAGTTTAGTCCTTCATTTTACTTG
1 CTTAAATATCTGTTATAAATTTGACCTGAATGAAAATTGAGAAGTTTAGTCCTTCATATTACTTG
***
665675 CAATTAGCAGTGGT
66 CAATTA-CAGTAAA
* *
665689 CTGTAAATATCTGTTATCAATTTGACCTGAATGTAAATTGAGAAGTTTAGTCCTTCATATTACTT
1 CT-TAAATATCTGTTATAAATTTGACCTGAATGAAAATTGAGAAGTTTAGTCCTTCATATTACTT
*
665754 GCAGGGATT-CCGTAAA
65 GCA---ATTACAGTAAA
665770 CTTAAATAT
1 CTTAAATAT
665779 GCCGATTTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
79 2 0.03
80 67 0.87
81 5 0.06
83 3 0.04
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (78 bp):
CTTAAATATCTGTTATAAATTTGACCTGAATGAAAATTGAGAAGTTTAGTCCTTCATATTACTTG
CAATTACAGTAAA
Found at i:668361 original size:85 final size:87
Alignment explanation
Indices: 668133--668456 Score: 297
Period size: 85 Copynumber: 3.8 Consensus size: 87
668123 AAGGTAATTA
* * *
668133 GCGGCGTTTGTATCCAAAAACGCCGCTATAGGTCT-GACTTTTTGCGGTGTTTGTGT-TCAAAAA
1 GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTAGACCTTTTGCGGCGTTTGT-TCT-AAAAA
*
668196 CGCCGTTATAGGTCTAAC-CTTTT
64 CGCCGCTATAGGTCTAACTCTTTT
* * * * * * * ** *
668219 GCGGCGTTTGTGTCTAAAAATGCCGCAAAAGGT-TAGACCTATAACGGCATTTGTTCTAAAAACG
1 GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTAGACCTTTTGCGGCGTTTGTTCTAAAAACG
* *
668283 CTAG-TATAGGTCT-TCTCTTTT
66 C-CGCTATAGGTCTAACTCTTTT
* * * *
668304 GCGGCGTTTGTATCAAAAAACGCCGCTATAGATCT-GACTTTTTGCGGCGTTTTTTCTAGAAACG
1 GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTAGACCTTTTGCGGCGTTTGTTCTAAAAACG
**
668368 CCGCTATATATCATAACT-TTTT
66 CCGCTATAGGTC-TAACTCTTTT
* * * * * *
668390 GTGGCGTTTAT-TCCAAAAACGCCGCTATAGATATCGACCTTTTGCGGCGTTTGTTCAAAAAATG
1 GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTAGACCTTTTGCGGCGTTTGTTCTAAAAACG
668454 CCG
66 CCG
668457 TAATAGATAT
Statistics
Matches: 190, Mismatches: 39, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
84 2 0.01
85 101 0.53
86 85 0.45
87 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (87 bp):
GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTAGACCTTTTGCGGCGTTTGTTCTAAAAACG
CCGCTATAGGTCTAACTCTTTT
Found at i:668451 original size:43 final size:42
Alignment explanation
Indices: 668133--668480 Score: 238
Period size: 43 Copynumber: 8.1 Consensus size: 42
668123 AAGGTAATTA
* * * *
668133 GCGGCGTTTGTATCCAAAAACGCCGCTATAGGTCTGACTTTTT
1 GCGGCGTTTGT-TCTAAAAACGCCGCTATAGATATGACCTTTT
* * * * *
668176 GCGGTGTTTGTGT-TCAAAAACGCCGTTATAGGTCTAACCTTTT
1 GCGGCGTTTGT-TCT-AAAAACGCCGCTATAGATATGACCTTTT
* * * * * *
668219 GCGGCGTTTGTGTCTAAAAATGCCGCAAAAGGT-TAGACCTATA
1 GCGGCGTTTGT-TCTAAAAACGCCGCTATAGATAT-GACCTTTT
* * * * * *
668262 ACGGCATTTGTTCTAAAAACGCTAG-TATAGGTCT-TCTCTTTT
1 GCGGCGTTTGTTCTAAAAACGC-CGCTATAGATATGAC-CTTTT
* * *
668304 GCGGCGTTTGTATCAAAAAACGCCGCTATAGATCTGACTTTTT
1 GCGGCGTTTGT-TCTAAAAACGCCGCTATAGATATGACCTTTT
* * * * *
668347 GCGGCGTTTTTTCTAGAAACGCCGCTATATATCATAACTTTTT
1 GCGGCGTTTGTTCTAAAAACGCCGCTATAGAT-ATGACCTTTT
* * *
668390 GTGGCGTTTATTCCAAAAACGCCGCTATAGATATCGACCTTTT
1 GCGGCGTTTGTTCTAAAAACGCCGCTATAGATAT-GACCTTTT
* * *
668433 GCGGCGTTTGTTCAAAAAATGCCG-TAATAGATATTGACCTATT
1 GCGGCGTTTGTTCTAAAAACGCCGCT-ATAGATA-TGACCTTTT
668476 GCGGC
1 GCGGC
668481 ATTTTTTGTT
Statistics
Matches: 244, Mismatches: 48, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.00
42 50 0.20
43 190 0.78
44 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
GCGGCGTTTGTTCTAAAAACGCCGCTATAGATATGACCTTTT
Found at i:671850 original size:17 final size:18
Alignment explanation
Indices: 671823--671873 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 18
671813 AGGATTAAAA
*
671823 ATTAAACAAATTATATGT
1 ATTAAATAAATTATATGT
*
671841 -TTAAATAAATTATTATTT
1 ATTAAATAAATTA-TATGT
671859 AATTAAATAAATTAT
1 -ATTAAATAAATTAT
671874 TCACAACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 11 0.39
18 4 0.14
19 1 0.04
20 12 0.43
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATAAATTATATGT
Found at i:671865 original size:16 final size:17
Alignment explanation
Indices: 671824--671866 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
671814 GGATTAAAAA
* *
671824 TTAAACAAATTATATGT
1 TTAAATAAATTATATAT
671841 TTAAATAAATTAT-TAT
1 TTAAATAAATTATATAT
*
671857 TTAATTAAAT
1 TTAAATAAAT
671867 AAATTATTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TTAAATAAATTATATAT
Found at i:672110 original size:29 final size:29
Alignment explanation
Indices: 672073--672229 Score: 125
Period size: 29 Copynumber: 5.2 Consensus size: 29
672063 ATCGAACCAA
* * *
672073 AATTTATTTTAAAATTATTAACCGAACTG
1 AATTAATTTGAAAATTATTAACCGAACAG
*
672102 AATTAATTTGAAAATTATTAACCGAACCGGATT
1 AATTAATTTGAAAATTATTAACCGAA-C--A-G
* *** * * *
672135 AACTTATTTTTTTAATCATTAATCGAACCAA
1 AA-TTAATTTGAAAATTATTAACCGAA-CAG
* * *
672166 AATTTATTTGAAAATTATTAACTGAACCG
1 AATTAATTTGAAAATTATTAACCGAACAG
*
672195 AATTAATTTGAAAATTATTAACTGAACAG
1 AATTAATTTGAAAATTATTAACCGAACAG
672224 AATTAA
1 AATTAA
672230 CCGATTATTT
Statistics
Matches: 100, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
29 58 0.58
30 17 0.17
31 2 0.02
32 1 0.01
33 2 0.02
34 20 0.20
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (29 bp):
AATTAATTTGAAAATTATTAACCGAACAG
Found at i:672120 original size:103 final size:106
Alignment explanation
Indices: 671920--672127 Score: 278
Period size: 112 Copynumber: 1.9 Consensus size: 106
671910 TTAACGGTTA
* * *
671920 AAGAAAAATTTCGGTTAATTCGGTTCGGTTAATTGAACCAAAATTTATTTGAAAATTATTAATCG
1 AAGAAAAAATTCGGTTAATTCGGTTCGGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCG
671985 AACCGAATTAACCAATTTTTTTAAAAAATTATTAACCGAATTAATCG
66 AACCGAATT-A--AA---TTTTAAAAAATTATTAACCGAATTAATCG
* *
672032 AAGAAAAAATTCGGTTAATTCGGTTTGGTTAATCGAACCAAAATTTATTTTAAAATTATTAACCG
1 AAGAAAAAATTCGGTTAATTCGGTTCGGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCG
* *
672097 AACTGAATT-AA-TTT-GAAAATTATTAACCGAA
66 AACCGAATTAAATTTTAAAAAATTATTAACCGAA
672128 CCGGATTAAC
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
103 16 0.18
104 3 0.03
108 2 0.02
112 68 0.76
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (106 bp):
AAGAAAAAATTCGGTTAATTCGGTTCGGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCG
AACCGAATTAAATTTTAAAAAATTATTAACCGAATTAATCG
Found at i:672163 original size:93 final size:93
Alignment explanation
Indices: 672060--672230 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
672050 TTCGGTTTGG
* *
672060 TTAATCGAACCAAAATTTATTTTAAAATTATTAACCGAACTGAATTAATTTGAAAATTATTAACC
1 TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCGAATTAATTTGAAAATTATTAACC
* *
672125 GAACCGGATTAACTTATTTTTTTAATCA
66 GAACAGAATTAACTTATTTTTTTAATCA
* *
672153 TTAATCGAACCAAAATTTATTTGAAAATTATTAACTGAACCGAATTAATTTGAAAATTATTAACT
1 TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCGAATTAATTTGAAAATTATTAACC
672218 GAACAGAATTAAC
66 GAACAGAATTAAC
672231 CGATTATTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.36
Consensus pattern (93 bp):
TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCGAATTAATTTGAAAATTATTAACC
GAACAGAATTAACTTATTTTTTTAATCA
Found at i:672348 original size:29 final size:29
Alignment explanation
Indices: 672299--672370 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
672289 TTGGTTAATT
*
672299 GAACCAAAATTTATTAGAAAATTATTAACC
1 GAACC-AAATTAATTAGAAAATTATTAACC
** *
672329 GAACTGAATTAATTTGAAAATTATTAACC
1 GAACCAAATTAATTAGAAAATTATTAACC
672358 GAACCAAATTAAT
1 GAACCAAATTAAT
672371 CGATTTTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 32 0.89
30 4 0.11
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (29 bp):
GAACCAAATTAATTAGAAAATTATTAACC
Found at i:672379 original size:233 final size:235
Alignment explanation
Indices: 671961--672395 Score: 680
Period size: 233 Copynumber: 1.9 Consensus size: 235
671951 ATTGAACCAA
* * *
671961 AATTTATTTGAAAATTATTAATCGAACCGAATTAACCAATTTTTTTAAAAAATTATTAACCGAAT
1 AATTAATTTGAAAATTATTAATCGAACAGAATTAACCAATTATTTTAAAAAATTATTAACCGAAT
** **
672026 TAATCGAAGAAAAAATTCGGTTAATTCGGTTTGGTTAATCGAACCAAAATTTATTTTAAAATTAT
66 TAATCGAAGAAAAAATTCGGTTAATTAAGTTTGGTTAATCGAACCAAAATTTATTAGAAAATTAT
** *
672091 TAACCGAACTGAATTAATTTGAAAATTATTAACCGAACCGGATTAACTTA-TTTTTTTAATCATT
131 TAACCGAACTGAATTAATTTGAAAATTATTAACCGAACCAAATTAACTGATTTTTTTTAATCATT
672155 AATCGAACCAAAATTTATTTGAAAATTATTAACTGAACCG
196 AATCGAACCAAAATTTATTTGAAAATTATTAACTGAACCG
* *
672195 AATTAATTTGAAAATTATTAA-CTGAACAGAATTAACCGATTATTTT-GAAAATTATTAACCGAA
1 AATTAATTTGAAAATTATTAATC-GAACAGAATTAACCAATTATTTTAAAAAATTATTAACCGAA
* * *
672258 TTAATCGAAGCAAAAATTTGGTTAATTAAGTTTGGTTAATTGAACCAAAATTTATTAGAAAATTA
65 TTAATCGAAGAAAAAATTCGGTTAATTAAGTTTGGTTAATCGAACCAAAATTTATTAGAAAATTA
*
672323 TTAACCGAACTGAATTAATTTGAAAATTATTAACCGAACCAAATTAA-TCGATTTTTTTTAATTA
130 TTAACCGAACTGAATTAATTTGAAAATTATTAACCGAACCAAATTAACT-GATTTTTTTTAATCA
672387 TTAATCGAA
194 TTAATCGAA
672396 TTAATCGAAG
Statistics
Matches: 182, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
232 1 0.01
233 121 0.66
234 60 0.33
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.37
Consensus pattern (235 bp):
AATTAATTTGAAAATTATTAATCGAACAGAATTAACCAATTATTTTAAAAAATTATTAACCGAAT
TAATCGAAGAAAAAATTCGGTTAATTAAGTTTGGTTAATCGAACCAAAATTTATTAGAAAATTAT
TAACCGAACTGAATTAATTTGAAAATTATTAACCGAACCAAATTAACTGATTTTTTTTAATCATT
AATCGAACCAAAATTTATTTGAAAATTATTAACTGAACCG
Found at i:672457 original size:138 final size:138
Alignment explanation
Indices: 672153--672654 Score: 713
Period size: 138 Copynumber: 3.6 Consensus size: 138
672143 TTTTTAATCA
* *
672153 TTAATCGAACCAAAATTTATTTGAAAATTATTAACTGAACCGAATTAATTTGAAAATTATTAACT
1 TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCGAATTAATTTGAAAATTATTAACC
** *
672218 GAA-CAGAATTAACCGATTATTTTGAAAATTATTAACCGAATTAATCGAAGCAAAAATTTGGTTA
66 GAACCA-AATTAACCGATT-TTTT-TTAATTATTAATCGAATTAATCGAAGCAAAAATTTGGTTA
672282 ATTAAGTTTGG
128 ATTAAGTTTGG
* * *
672293 TTAATTGAACCAAAATTTATTAGAAAATTATTAACCGAACTGAATTAATTTGAAAATTATTAACC
1 TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCGAATTAATTTGAAAATTATTAACC
* * * *
672358 GAACCAAATTAATCGATTTTTTTTAATTATTAATCGAATTAATCGAAGTAAAACTTTGATTAATT
66 GAACCAAATTAACCGATTTTTTTTAATTATTAATCGAATTAATCGAAGCAAAAATTTGGTTAATT
** * *
672423 GGGCTCGG
131 AAGTTTGG
*
672431 TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGATCCGAATTAATTTGAAAATTATTAACC
1 TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCGAATTAATTTGAAAATTATTAACC
* * * *
672496 GAACCGAATTAACC-AATTTTTTTAATTATTAATTGAATTAATCGAAGCAAAAAATTGGTTAATT
66 GAACCAAATTAACCGATTTTTTTTAATTATTAATCGAATTAATCGAAGCAAAAATTTGGTTAATT
* *
672560 CAGTTTGA
131 AAGTTTGG
* * *
672568 TTAATCGAACCAAACTTT-TTTGTAAATTATTAACCGAACCGAATTAATTTGAAAATTATTCACC
1 TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCGAATTAATTTGAAAATTATTAACC
*
672632 GAACCGAATTAACCGATTTTTTT
66 GAACCAAATTAACCGATTTTTTT
672655 CTTTAACCAT
Statistics
Matches: 322, Mismatches: 38, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
136 57 0.18
137 71 0.22
138 114 0.35
139 4 0.01
140 74 0.23
141 2 0.01
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (138 bp):
TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCGAATTAATTTGAAAATTATTAACC
GAACCAAATTAACCGATTTTTTTTAATTATTAATCGAATTAATCGAAGCAAAAATTTGGTTAATT
AAGTTTGG
Found at i:672486 original size:29 final size:29
Alignment explanation
Indices: 672444--672507 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
672434 ATCGAACCAA
* *
672444 AATTTATTTGAAAATTATTAACCGATCCG
1 AATTAATTTGAAAATTATTAACCGAACCG
672473 AATTAATTTGAAAATTATTAACCGAACCG
1 AATTAATTTGAAAATTATTAACCGAACCG
672502 AATTAA
1 AATTAA
672508 CCAATTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.34
Consensus pattern (29 bp):
AATTAATTTGAAAATTATTAACCGAACCG
Found at i:672606 original size:29 final size:29
Alignment explanation
Indices: 672567--672643 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
672557 ATTCAGTTTG
* * *
672567 ATTAATCGAACCAAACTT-TTTTGTAAATT
1 ATTAACCGAACCAAA-TTAATTTGAAAATT
*
672596 ATTAACCGAACCGAATTAATTTGAAAATT
1 ATTAACCGAACCAAATTAATTTGAAAATT
* *
672625 ATTCACCGAACCGAATTAA
1 ATTAACCGAACCAAATTAA
672644 CCGATTTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.05
29 40 0.95
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (29 bp):
ATTAACCGAACCAAATTAATTTGAAAATT
Found at i:673449 original size:22 final size:22
Alignment explanation
Indices: 673419--673467 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
673409 AAACAACTGA
673419 AAAACATGCCAAAAAGAATAA-G
1 AAAACATGCCAAAAAG-ATAATG
* * *
673441 AAAATATGCTATAAAGATAATG
1 AAAACATGCCAAAAAGATAATG
673463 AAAAC
1 AAAAC
673468 GTACAACACA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.61, C:0.10, G:0.12, T:0.16
Consensus pattern (22 bp):
AAAACATGCCAAAAAGATAATG
Found at i:677721 original size:5 final size:5
Alignment explanation
Indices: 677713--677873 Score: 322
Period size: 5 Copynumber: 32.2 Consensus size: 5
677703 TTAAATATTA
677713 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
1 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
677763 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
1 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
677813 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
1 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
677863 TATCT TATCT T
1 TATCT TATCT T
677874 TTTATTAGGT
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 156 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (5 bp):
TATCT
Found at i:677941 original size:21 final size:24
Alignment explanation
Indices: 677915--677967 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 24
677905 AGTATTTTAA
677915 TTAGGATTTAT-TTT-CTTT-ATT
1 TTAGGATTTATCTTTACTTTGATT
*
677936 TTAGGA-TTATCTTTACTTTGTTT
1 TTAGGATTTATCTTTACTTTGATT
677959 TTAGGATTT
1 TTAGGATTT
677968 TGAAGGCTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 4 0.15
21 9 0.33
22 4 0.15
23 8 0.30
24 2 0.07
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.62
Consensus pattern (24 bp):
TTAGGATTTATCTTTACTTTGATT
Found at i:680335 original size:21 final size:20
Alignment explanation
Indices: 680311--680378 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
680301 AATTTCACAA
680311 GAAAAGATGGTTACATCCCAT
1 GAAAAGATGGTT-CATCCCAT
* *
680332 GAAAA-ATTGGTCTTATCCCAA
1 GAAAAGA-TGGT-TCATCCCAT
* *
680353 GAAACGTTGGTTGCATCCCAT
1 GAAAAGATGGTT-CATCCCAT
680374 GAAAA
1 GAAAA
680379 ATTCCAGAGA
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
20 2 0.06
21 33 0.92
22 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (20 bp):
GAAAAGATGGTTCATCCCAT
Found at i:688928 original size:17 final size:18
Alignment explanation
Indices: 688895--688928 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
688885 TTCATTCTGT
*
688895 CTTATTATTTAATTCCAA
1 CTTATCATTTAATTCCAA
688913 CTTATCATTT-ATTCCA
1 CTTATCATTTAATTCCA
688929 GACCTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
CTTATCATTTAATTCCAA
Found at i:691915 original size:43 final size:43
Alignment explanation
Indices: 691828--691916 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
691818 ATACGTCTAA
* * * *
691828 CGACGTAATTTTCGTGAGAGTTGATTGGAGGGGAAGGATGGAC
1 CGACGTAATTTTCGTGAGAGTTGATTGGAGAGAAAGCATAGAC
*
691871 CGACGTAATTTTCGTGAGAGTTG-TTCGGAGAGAAATCATAGAC
1 CGACGTAATTTTCGTGAGAGTTGATT-GGAGAGAAAGCATAGAC
691914 CGA
1 CGA
691917 TGTGAGAGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 2 0.05
43 38 0.95
ACGTcount: A:0.28, C:0.12, G:0.34, T:0.26
Consensus pattern (43 bp):
CGACGTAATTTTCGTGAGAGTTGATTGGAGAGAAAGCATAGAC
Found at i:695340 original size:17 final size:17
Alignment explanation
Indices: 695308--695345 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
695298 AACAACCAAG
695308 AATAAAATATATAAATA
1 AATAAAATATATAAATA
695325 AATATAAATATA-AAATA
1 AATA-AAATATATAAATA
695342 AATA
1 AATA
695346 CAAGGACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAAATATATAAATA
Found at i:696074 original size:2 final size:2
Alignment explanation
Indices: 696067--696099 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
696057 ATATGATGTT
696067 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
696100 TGTTTTTCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:699947 original size:24 final size:20
Alignment explanation
Indices: 699891--699948 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 20
699881 TCCCCTTTGA
*
699891 AGTGCATCGATACATTCTAC
1 AGTGCATCGATGCATTCTAC
*
699911 AGTGCATCAATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
699934 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
699949 CTACCCATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 15 0.48
22 1 0.03
23 3 0.10
24 12 0.39
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:701327 original size:20 final size:19
Alignment explanation
Indices: 701302--701341 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
701292 TTCGACCCCT
*
701302 TTCATTTCTTTATTCCATTA
1 TTCATTTATTTATTCC-TTA
701322 TTCATTTATTTATTCCTTA
1 TTCATTTATTTATTCCTTA
701341 T
1 T
701342 ACACAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.62
Consensus pattern (19 bp):
TTCATTTATTTATTCCTTA
Found at i:704884 original size:24 final size:20
Alignment explanation
Indices: 704831--704888 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
704821 TCCCCTTTGA
*
704831 AGTGCATCGATACATTCTAC
1 AGTGCATCGATGCATTCTAC
704851 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
704874 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
704889 CTACCCATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:708923 original size:76 final size:74
Alignment explanation
Indices: 708825--709052 Score: 245
Period size: 76 Copynumber: 3.1 Consensus size: 74
708815 CTTGAGGTTG
* *
708825 TTTTTCTTAAAAAAGACTTTGTCTCACTTGAGACAATTTTACTCGAAAGAATACATTTCATTTTA
1 TTTTTCTTAAAAAAGA-TTTGTCTCGCTTGAGACAATTTTACTCGAAAGAA-ACATTTCATTTCA
708890 CTCAAGATTTT
64 CTCAAGATTTT
*
708901 TTTTTCTTAAAATAAGATTTGTCTCGCTTGAGACAATTTTTACTCGAAACAAGAAAGATTT-ATT
1 TTTTTCTTAAAA-AAGATTTGTCTCGCTTGAGACAA-TTTTACTCG--A-AAGAAACATTTCATT
708965 TCACTCAAGA--TT
61 TCACTCAAGATTTT
* * ** *
708977 GTTTTCTTAAAACA-ATTTGTCTCGCTT--GACGGTTTTTACTC-AAAAAAGACATTTCATTTCA
1 TTTTTCTTAAAAAAGATTTGTCTCGCTTGAGAC-AATTTTACTCGAAAGAA-ACATTTCATTTCA
*
709038 CTCAAGATTGT
64 CTCAAGATTTT
709049 TTTT
1 TTTT
709053 AAAGAATTTT
Statistics
Matches: 131, Mismatches: 11, Indels: 24
0.79 0.07 0.14
Matches are distributed among these distances:
68 4 0.03
69 6 0.05
70 13 0.10
72 15 0.11
74 13 0.10
75 1 0.01
76 43 0.33
77 13 0.10
78 12 0.09
79 6 0.05
80 5 0.04
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (74 bp):
TTTTTCTTAAAAAAGATTTGTCTCGCTTGAGACAATTTTACTCGAAAGAAACATTTCATTTCACT
CAAGATTTT
Found at i:709115 original size:39 final size:39
Alignment explanation
Indices: 709058--709311 Score: 320
Period size: 39 Copynumber: 6.6 Consensus size: 39
709048 TTTTTAAAGA
* *
709058 ATTTTATCT--CTTGAGATAGTTTCCCTTGAAACATAAG
1 ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAGAAG
709095 ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAGAAG
1 ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAGAAG
* *
709134 ATTTTATCTCGCTTGAGATAGTTTCTCTTGAAACAGAAG
1 ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAGAAG
* *
709173 ATTTTATCTCGGTTGA-ATAGTTTCCCTCG-AATAGAAG
1 ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAGAAG
* * * *
709210 ATTTTATCTGGTTTAAGATAGTTTACCTCGAAACAGAAG
1 ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAGAAG
* * *
709249 ATTTTATCTCACTTGAAATAGTTTCCCTTGAAACAAGAA-
1 ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC-AGAAG
** *
709288 ATTTTATCTTACTTGAGATGGTTT
1 ATTTTATCTCGCTTGAGATAGTTT
709312 TTATTAAAAC
Statistics
Matches: 189, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
37 29 0.15
38 23 0.12
39 133 0.70
40 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (39 bp):
ATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAGAAG
Found at i:709243 original size:76 final size:76
Alignment explanation
Indices: 709058--709296 Score: 306
Period size: 76 Copynumber: 3.1 Consensus size: 76
709048 TTTTTAAAGA
* *
709058 ATTTTATCT--CTTGAGATAGTTTCCCTTGAAACATAAGATTTTATCTCGCTTGAGATAGTTTCC
1 ATTTTATCTCGCTTAAGATAGTTT-CCTTGAAACAGAAGATTTTATCTCGCTTGA-ATAGTTTCC
709121 CTCGAAACAGAAG
64 CTCGAAACAGAAG
* *
709134 ATTTTATCTCGCTTGAGATAGTTTCTCTTGAAACAGAAGATTTTATCTCGGTTGAATAGTTTCCC
1 ATTTTATCTCGCTTAAGATAGTTTC-CTTGAAACAGAAGATTTTATCTCGCTTGAATAGTTTCCC
*
709199 TCG-AATAGAAG
65 TCGAAACAGAAG
* * * *
709210 ATTTTATCTGGTTTAAGATAGTTTACCTCGAAACAGAAGATTTTATCTCACTTGAAATAGTTTCC
1 ATTTTATCTCGCTTAAGATAGTTT-CCTTGAAACAGAAGATTTTATCTCGCTTG-AATAGTTTCC
*
709275 CTTGAAACAAGAA-
64 CTCGAAAC-AGAAG
709288 ATTTTATCT
1 ATTTTATCT
709297 TACTTGAGAT
Statistics
Matches: 145, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
76 62 0.43
77 28 0.19
78 51 0.35
79 4 0.03
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.38
Consensus pattern (76 bp):
ATTTTATCTCGCTTAAGATAGTTTCCTTGAAACAGAAGATTTTATCTCGCTTGAATAGTTTCCCT
CGAAACAGAAG
Found at i:709264 original size:115 final size:115
Alignment explanation
Indices: 709057--709311 Score: 345
Period size: 115 Copynumber: 2.2 Consensus size: 115
709047 GTTTTTAAAG
* * * *
709057 AATTTTATCTCTTGAGATAGTTTCCCTTGAAACATAAGATTTTATCTCGCTTGAGATAGTTTCCC
1 AATTTTATCTCTTGAGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTAAGATAGTTTACC
* * *
709122 TCGAAACAGAAGATTTTATCTCGCTTGAGATAGTTTCTCTTGAAAC-AGA
66 TCGAAACAGAAGATTTTATCTCACTTGAAATAGTTTCCCTTGAAACAAGA
* * *
709171 AGATTTTATCTCGGTTGA-ATAGTTTCCCTCG-AATAGAAGATTTTATCTGGTTTAAGATAGTTT
1 A-ATTTTATCTC--TTGAGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTAAGATAGTTT
709234 ACCTCGAAACAGAAGATTTTATCTCACTTGAAATAGTTTCCCTTGAAACAAGA
63 ACCTCGAAACAGAAGATTTTATCTCACTTGAAATAGTTTCCCTTGAAACAAGA
*
709287 AATTTTATCTTACTTGAGATGGTTT
1 AATTTTATC-T-CTTGAGATAGTTT
709312 TTATTAAAAC
Statistics
Matches: 123, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
114 1 0.01
115 94 0.76
116 23 0.19
117 5 0.04
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (115 bp):
AATTTTATCTCTTGAGATAGTTTCCCTCGAAACAGAAGATTTTATCTCGCTTAAGATAGTTTACC
TCGAAACAGAAGATTTTATCTCACTTGAAATAGTTTCCCTTGAAACAAGA
Found at i:709974 original size:87 final size:86
Alignment explanation
Indices: 709787--710028 Score: 369
Period size: 87 Copynumber: 2.8 Consensus size: 86
709777 AAACTTTTAG
* *
709787 CTCAAATCTATCACAGAAGGAGGTAGATCAGCACCAACATCTCGTTCGATCCCATCACAGAAGGA
1 CTCAAATCTATCACAGAAGGAGGTAGATCAGCACCAATATCTCGTTCGATCCCATCACAGAATGA
** *
709852 TGATAATTGACATTTTCATTTCA
66 -G-GGATCGACATTTTCATTTCA
* * *
709875 CTCAAATCTATCAAAGAATGAGGTAGATCAGCACACAATATCTCGTTCGATCCCATCACATAATG
1 CTCAAATCTATCACAGAAGGAGGTAGATCAGCAC-CAATATCTCGTTCGATCCCATCACAGAATG
709940 AGGGATCGACATTTTCATTTCA
65 AGGGATCGACATTTTCATTTCA
*
709962 CTCAAATCTATCACAGAAGGAGGTAGATCAGCACCAATATCTCGTTCAATCCCATCACAGAAT-A
1 CTCAAATCTATCACAGAAGGAGGTAGATCAGCACCAATATCTCGTTCGATCCCATCACAGAATGA
710026 GGG
66 GGG
710029 GGAAGCTTGA
Statistics
Matches: 141, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
85 4 0.03
86 27 0.19
87 49 0.35
88 33 0.23
89 28 0.20
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (86 bp):
CTCAAATCTATCACAGAAGGAGGTAGATCAGCACCAATATCTCGTTCGATCCCATCACAGAATGA
GGGATCGACATTTTCATTTCA
Found at i:710691 original size:8 final size:8
Alignment explanation
Indices: 710672--710743 Score: 56
Period size: 8 Copynumber: 8.8 Consensus size: 8
710662 TAGGTCCTTG
710672 TATTTATTT
1 TATTT-TTT
710681 TATTTTTT
1 TATTTTTT
710689 TATTTATTT
1 TATTT-TTT
* *
710698 TATTCTTA
1 TATTTTTT
* *
710706 TGTTTTTAC
1 TATTTTT-T
*
710715 TATTTTTA
1 TATTTTTT
*
710723 TACTTTTT
1 TATTTTTT
710731 TATTTTTT
1 TATTTTTT
710739 T-TTTT
1 TATTTT
710744 AAAAGTTTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
7 4 0.08
8 29 0.57
9 18 0.35
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (8 bp):
TATTTTTT
Found at i:710698 original size:9 final size:9
Alignment explanation
Indices: 710672--710701 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
710662 TAGGTCCTTG
710672 TATTTATTT
1 TATTTATTT
710681 TATTT-TTT
1 TATTTATTT
710689 TATTTATTT
1 TATTTATTT
710698 TATT
1 TATT
710702 CTTATGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TATTTATTT
Found at i:710721 original size:23 final size:22
Alignment explanation
Indices: 710674--710723 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
710664 GGTCCTTGTA
* *
710674 TTTATTTTATTTTTTTATTTAT
1 TTTATTTTATGTTTTTATATAT
710696 TTTATTCTTATGTTTTTACTAT-T
1 TTTATT-TTATGTTTTTA-TATAT
710719 TTTAT
1 TTTAT
710724 ACTTTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.25
23 16 0.67
24 2 0.08
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTATTTTATGTTTTTATATAT
Found at i:713530 original size:21 final size:20
Alignment explanation
Indices: 713444--713601 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
713434 AAATGACCAA
**
713444 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
713463 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
713483 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
713503 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
713524 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
713545 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
713565 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
713586 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
713602 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:713630 original size:20 final size:20
Alignment explanation
Indices: 713568--713755 Score: 183
Period size: 20 Copynumber: 9.7 Consensus size: 20
713558 CGATTTTCCA
* ** *
713568 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
713588 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
713608 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
713628 AAAT-GCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
713647 -AATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
713666 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
713686 ATATCGCAA--CGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
713704 -AATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
713723 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
713743 AAATCGCAACGCG
1 AAATCGCAACGCG
713756 ATATTTAAAG
Statistics
Matches: 137, Mismatches: 22, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
17 7 0.05
18 13 0.09
19 31 0.23
20 83 0.61
21 3 0.02
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:713726 original size:57 final size:57
Alignment explanation
Indices: 713589--713753 Score: 208
Period size: 57 Copynumber: 2.9 Consensus size: 57
713579 CGAATATGAA
** *
713589 AATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTAAAT-GCAACGTGTATCCGT
1 AATCGCAACGATAATACATAAATCGCAACGCGTATCCGTAAATCGCAAC--GTATCCGT
* *** * *
713647 AATCGCAACGCGT-ATGGGTAAATCGCAATGCGTATCCGTATATCGCAACGTATCCGT
1 AATCGCAACG-ATAATACATAAATCGCAACGCGTATCCGTAAATCGCAACGTATCCGT
713704 AATCGCAACGATAATACATAAATCGCAACGCGTATCCGTAAATCGCAACG
1 AATCGCAACGATAATACATAAATCGCAACGCGTATCCGTAAATCGCAACG
713754 CGATATTTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
56 1 0.01
57 50 0.56
58 34 0.38
59 5 0.06
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (57 bp):
AATCGCAACGATAATACATAAATCGCAACGCGTATCCGTAAATCGCAACGTATCCGT
Found at i:713923 original size:21 final size:22
Alignment explanation
Indices: 713897--713950 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
713887 CACTCTACGG
713897 CGAAGAAATCCGT-CCCATCTC
1 CGAAGAAATCCGTCCCCATCTC
**
713918 CGAAGATTTCCGTCCCCATCTC
1 CGAAGAAATCCGTCCCCATCTC
**
713940 CGGTGAAATCC
1 CGAAGAAATCC
713951 CTCACAACCA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.24, C:0.37, G:0.17, T:0.22
Consensus pattern (22 bp):
CGAAGAAATCCGTCCCCATCTC
Found at i:714168 original size:33 final size:33
Alignment explanation
Indices: 714129--714199 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
714119 TTCACTTAGA
*
714129 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
714162 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
714195 TTTCA
1 TTTCA
714200 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:714322 original size:20 final size:20
Alignment explanation
Indices: 714278--714387 Score: 108
Period size: 21 Copynumber: 5.8 Consensus size: 20
714268 TGCAGAAGAG
*
714278 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-GAATGAAAA
***
714299 TCGCAACGAGAGAATGACTG
1 TCGCAACGAGAGAATGAAAA
714319 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAG-AATGAAAA
714340 TCGCAAC--GAG-A-G--AA
1 TCGCAACGAGAGAATGAAAA
*
714354 TCGCAACGCGA-AATGAAAA
1 TCGCAACGAGAGAATGAAAA
714373 TCGCAACGAGAGAAT
1 TCGCAACGAGAGAAT
714388 CGCAACGCGA
Statistics
Matches: 73, Mismatches: 8, Indels: 17
0.74 0.08 0.17
Matches are distributed among these distances:
14 9 0.12
16 4 0.05
17 2 0.03
19 15 0.21
20 20 0.27
21 23 0.32
ACGTcount: A:0.45, C:0.18, G:0.25, T:0.12
Consensus pattern (20 bp):
TCGCAACGAGAGAATGAAAA
Found at i:714335 original size:41 final size:38
Alignment explanation
Indices: 714271--714387 Score: 145
Period size: 41 Copynumber: 3.1 Consensus size: 38
714261 TTCAATTTGC
* *
714271 AGAAGAGTCGCAACGAGATAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
714309 AGAATGACTGTCGCAACGAGAGAAATGAAAATCGCAACGAG
1 AGAAT-A--GTCGCAACGAGAGAAATGAAAATCGCAACGAG
*
714350 AG-A-A-TCGCAAC--GCGAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
714383 AGAAT
1 AGAAT
714388 CGCAACGCGA
Statistics
Matches: 71, Mismatches: 3, Indels: 13
0.82 0.03 0.15
Matches are distributed among these distances:
33 23 0.32
34 1 0.01
35 7 0.10
38 5 0.07
39 1 0.01
40 1 0.01
41 33 0.46
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (38 bp):
AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
Found at i:714357 original size:14 final size:14
Alignment explanation
Indices: 714338--714394 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
714328 GAGAAATGAA
714338 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
714352 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
714371 AATCGCAACGAGAG
1 AATCGCAACGAGAG
714385 AATCGCAACG
1 AATCGCAACG
714395 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:714370 original size:33 final size:33
Alignment explanation
Indices: 714330--714410 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
714320 CGCAACGAGA
714330 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
714363 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
714396 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
714411 TTGCGATTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:714447 original size:14 final size:14
Alignment explanation
Indices: 714428--714516 Score: 79
Period size: 14 Copynumber: 5.7 Consensus size: 14
714418 TTTCATTTCG
714428 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
714442 CGTTGCGATTTCATTTCG
1 CGTTGCGA-TTC---TCT
714460 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
714474 CGTTGCGATTGTCATTTCG
1 CGTTGCGA-T-TC---TCT
714493 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
714507 CGTTGCGATT
1 CGTTGCGATT
714517 TTCATTTCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
14 30 0.48
15 4 0.06
16 2 0.03
17 5 0.08
18 11 0.18
19 10 0.16
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:714494 original size:33 final size:33
Alignment explanation
Indices: 714411--714524 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
714401 CAAAATCGCA
714411 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
714444 TTGCGA-TTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
714476 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
714509 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
714525 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
32 32 0.41
33 46 0.59
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:716367 original size:93 final size:93
Alignment explanation
Indices: 716208--716669 Score: 859
Period size: 93 Copynumber: 5.1 Consensus size: 93
716198 TAGATTGCTT
*
716208 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
716273 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
716301 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
716366 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
716394 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
716459 TTTG--TTTG-TTTGTC-TTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
716483 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAAC--TGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
716546 TTTGTCTTTGTTTTGTC-TTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
716573 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
716638 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
716665 AGTAA
1 AGTAA
716670 TGCAATCCAT
Statistics
Matches: 362, Mismatches: 1, Indels: 13
0.96 0.00 0.03
Matches are distributed among these distances:
87 31 0.09
89 50 0.14
90 58 0.16
91 4 0.01
92 50 0.14
93 169 0.47
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:716810 original size:19 final size:19
Alignment explanation
Indices: 716719--716843 Score: 94
Period size: 19 Copynumber: 7.2 Consensus size: 19
716709 GTTTACTTTT
* *
716719 GCAACACGAAACTTAAAATC
1 GCAACGCGAAAC-CAAAATC
*
716739 GCAACGCGAAACCAAAATT
1 GCAACGCGAAACCAAAATC
**
716758 GCAACGCG-AATGAAAATC
1 GCAACGCGAAACCAAAATC
*
716776 GCAA--CG--A-CAGAATC
1 GCAACGCGAAACCAAAATC
716790 GCAACGCGAAACCAAAATC
1 GCAACGCGAAACCAAAATC
*
716809 GCAA--CG--A-CAAGATC
1 GCAACGCGAAACCAAAATC
716823 GCAACGCGAAACC-AAATC
1 GCAACGCGAAACCAAAATC
716841 GCA
1 GCA
716844 TTGCGATTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
14 19 0.23
15 2 0.02
16 6 0.07
17 2 0.02
18 20 0.24
19 24 0.29
20 11 0.13
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.09
Consensus pattern (19 bp):
GCAACGCGAAACCAAAATC
Found at i:716812 original size:33 final size:33
Alignment explanation
Indices: 716770--716843 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
716760 AACGCGAATG
716770 AAAATCGCAACGAC-AGAATCGCAACGCGAAACC
1 AAAATCGCAACGACAAG-ATCGCAACGCGAAACC
716803 AAAATCGCAACGACAAGATCGCAACGCGAAACC
1 AAAATCGCAACGACAAGATCGCAACGCGAAACC
716836 -AAATCGCA
1 AAAATCGCA
716844 TTGCGATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
32 8 0.20
33 30 0.75
34 2 0.05
ACGTcount: A:0.46, C:0.30, G:0.18, T:0.07
Consensus pattern (33 bp):
AAAATCGCAACGACAAGATCGCAACGCGAAACC
Found at i:716841 original size:51 final size:49
Alignment explanation
Indices: 716734--716843 Score: 114
Period size: 51 Copynumber: 2.2 Consensus size: 49
716724 ACGAAACTTA
* * * *
716734 AAATCGCAACGCGAAACCAAAATTGCAACGCGAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGCAAATGAAAAGCGAAAC-AC
* *
716784 AGAATCGCAACGCGAAACCAAAATCGCAACGACAAGATCGCAACGCGAAAC-C
1 A-AATCGCAACGCGAAACCAAAATCGCAACG-CAA-AT-GAAAAGCGAAACAC
716836 AAATCGCA
1 AAATCGCA
716844 TTGCGATTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
50 1 0.02
51 35 0.70
52 4 0.08
53 2 0.04
54 8 0.16
ACGTcount: A:0.45, C:0.28, G:0.18, T:0.08
Consensus pattern (49 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGCAAATGAAAAGCGAAACAC
Found at i:716866 original size:19 final size:19
Alignment explanation
Indices: 716839--716957 Score: 123
Period size: 19 Copynumber: 6.8 Consensus size: 19
716829 CGAAACCAAA
*
716839 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
716858 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
716874 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
716891 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
716907 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
716924 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
716943 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
716958 AAGTTTCGTG
Statistics
Matches: 83, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
14 15 0.18
16 11 0.13
17 11 0.13
19 46 0.55
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:716880 original size:14 final size:14
Alignment explanation
Indices: 716861--716917 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
716851 TTTCATTTCG
716861 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
716875 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
716892 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
716908 CGTTGCGATT
1 CGTTGCGATT
716918 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:716886 original size:33 final size:33
Alignment explanation
Indices: 716844--716936 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
716834 CCAAATCGCA
*
716844 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
716877 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
716910 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
716937 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:717450 original size:21 final size:20
Alignment explanation
Indices: 717393--717451 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
717383 CTCGAGAGTC
*
717393 CCCTCCCACCGTTCAAGAGG
1 CCCTCCCACCATTCAAGAGG
* * * *
717413 CACT-GCATCATTGAAGAGG
1 CCCTCCCACCATTCAAGAGG
717432 TCCCTCCCACCATTCAAGAG
1 -CCCTCCCACCATTCAAGAG
717452 CCCGATTCAC
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
19 11 0.39
20 6 0.21
21 11 0.39
ACGTcount: A:0.25, C:0.37, G:0.19, T:0.19
Consensus pattern (20 bp):
CCCTCCCACCATTCAAGAGG
Found at i:718848 original size:13 final size:14
Alignment explanation
Indices: 718840--718876 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
718830 GATTGTTTAA
718840 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
*
718854 ATGATTTGTAAAAG
1 TTGATTTGTAAAAG
718868 TTGATTTGT
1 TTGATTTGT
718877 GTAATTGATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:718999 original size:19 final size:19
Alignment explanation
Indices: 718983--719080 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
718973 AAAAATGACT
718983 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
719002 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
719021 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
719035 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
719054 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
719074 ATCGCAA
1 ATCGCAA
719081 CGAGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:719112 original size:53 final size:53
Alignment explanation
Indices: 718983--719098 Score: 225
Period size: 53 Copynumber: 2.2 Consensus size: 53
718973 AAAAATGACT
718983 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
719035 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
719088 ATCGCAATGCG
1 ATCGCAATGCG
719099 TTTATAATTT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 29 0.46
53 34 0.54
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:719142 original size:33 final size:33
Alignment explanation
Indices: 719105--719362 Score: 215
Period size: 33 Copynumber: 7.5 Consensus size: 33
719095 TGCGTTTATA
719105 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
*
719138 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATT-T-TC
* * * * *
719178 GTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTC
1 ATTTCGCA-TTGCGATTCTCTCGTTGCGATTTTC
719209 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
*
719242 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATT-T-TC
* * *
719282 GTTGCG-ATTTTC-ATT-TC-CGCATTGCGATTTTC
1 ATTTCGCA-TTGCGATTCTCTCG--TTGCGATTTTC
719314 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
719347 ATTTCGCATTGCGATT
1 ATTTCGCATTGCGATT
719363 TTCATTTCGC
Statistics
Matches: 182, Mismatches: 20, Indels: 46
0.73 0.08 0.19
Matches are distributed among these distances:
31 9 0.05
32 14 0.08
33 82 0.45
34 14 0.08
35 11 0.06
36 8 0.04
37 4 0.02
38 16 0.09
39 6 0.03
40 18 0.10
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (33 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
Found at i:719151 original size:19 final size:19
Alignment explanation
Indices: 719127--719420 Score: 350
Period size: 19 Copynumber: 16.7 Consensus size: 19
719117 GATTCTCTCG
719127 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
719146 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
719165 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
719179 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
719198 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
719217 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
719231 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
719250 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
719269 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
719283 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
719303 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
719322 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
719336 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
719355 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
719374 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
719388 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
719408 TTGCGATTTTCAT
1 TTGCGATTTTCAT
719421 GTTGGGATTT
Statistics
Matches: 238, Mismatches: 10, Indels: 53
0.79 0.03 0.18
Matches are distributed among these distances:
14 30 0.13
16 35 0.15
17 31 0.13
18 4 0.02
19 110 0.46
20 28 0.12
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:719162 original size:52 final size:52
Alignment explanation
Indices: 719105--719420 Score: 614
Period size: 52 Copynumber: 6.0 Consensus size: 52
719095 TGCGTTTATA
719105 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
719157 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
719209 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
719261 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
719314 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
719366 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
719419 AT
1 AT
719421 GTTGGGATTT
Statistics
Matches: 262, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
52 193 0.74
53 69 0.26
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (52 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
Found at i:719376 original size:105 final size:105
Alignment explanation
Indices: 719105--719420 Score: 625
Period size: 105 Copynumber: 3.0 Consensus size: 105
719095 TGCGTTTATA
719105 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
719170 ATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
66 ATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
719209 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
719274 ATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
66 ATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
719314 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
719379 ATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
66 ATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
719419 AT
1 AT
719421 GTTGGGATTT
Statistics
Matches: 211, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
104 89 0.42
105 122 0.58
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (105 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
ATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
Found at i:719470 original size:33 final size:33
Alignment explanation
Indices: 719146--719462 Score: 270
Period size: 33 Copynumber: 9.2 Consensus size: 33
719136 TCATTTCGCA
719146 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
719179 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG
* * * * *
719215 CATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCA
1 --TTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG
719250 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
719283 TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTT-CGCATTGCGA--TTC-TCTCG
* * * * *
719320 CATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCA
1 --TTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG
719355 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
719388 TTGCGATTTTCATTTCCGCATTGCGATTTTCAT-G
1 TTGCGATTTTCATTT-CGCATTGCGATTCTC-TCG
* * *
719422 TTGGGATTTTCATTTCGTATTGCAATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
719455 TTGCGATT
1 TTGCGATT
719463 GTAATTTCCG
Statistics
Matches: 228, Mismatches: 30, Indels: 52
0.74 0.10 0.17
Matches are distributed among these distances:
31 18 0.08
32 11 0.05
33 97 0.43
34 39 0.17
35 8 0.04
36 7 0.03
37 8 0.04
38 8 0.04
39 13 0.06
40 15 0.07
41 4 0.02
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:721972 original size:24 final size:24
Alignment explanation
Indices: 721938--721984 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
721928 CTGAAACATC
721938 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
721962 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
721985 GACCAAATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:722694 original size:20 final size:20
Alignment explanation
Indices: 722666--722895 Score: 230
Period size: 20 Copynumber: 11.5 Consensus size: 20
722656 AAATTTCAGT
* * *
722666 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
722686 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
722706 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
722726 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
722746 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
722766 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* ** *
722786 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATTCGC
* *
722806 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
*
722826 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
722846 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
**
722866 GTTGCGATTTTA-ATATTCGC
1 GTTGCGA-TTTACGGATTCGC
722886 GTTGCGATTT
1 GTTGCGATTT
722896 TGGAAAATCG
Statistics
Matches: 183, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
19 3 0.02
20 175 0.96
21 5 0.03
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:722896 original size:20 final size:20
Alignment explanation
Indices: 722862--722959 Score: 83
Period size: 21 Copynumber: 4.8 Consensus size: 20
722852 ATTTATGTGT
*
722862 TCGCGTTGCGATTTTAATAT
1 TCGCGTTGCGATTTTAATAA
722882 TCGCGTTGCGATTTTGGAA-AA
1 TCGCGTTGCGATTTT--AATAA
** *
722903 TCGCAATGCGAATTTGTACT-A
1 TCGCGTTGCG-ATTT-TAATAA
* *
722924 TCGCATTGCGATTTTCAAGAA
1 TCGCGTTGCGATTTT-AATAA
722945 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
722960 GGAAACTGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
19 1 0.02
20 20 0.32
21 35 0.56
22 6 0.10
23 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTAATAA
Found at i:722955 original size:42 final size:43
Alignment explanation
Indices: 722862--722960 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 43
722852 ATTTATGTGT
* *
722862 TCGCGTTGCG-ATTT-TAATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTAATATTCGCATTGCGATTTTGCAAAA
** *
722903 TCGCAATGCGAATTTGTACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTAATATTCGCATTGCGATTTTGCAA-AA
*
722945 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
722961 GAAACTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
41 10 0.21
42 33 0.70
43 4 0.09
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTAATATTCGCATTGCGATTTTGCAAAA
Found at i:729627 original size:2 final size:2
Alignment explanation
Indices: 729620--729645 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
729610 TGCGCAGATG
729620 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
729646 CATGTAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:735379 original size:14 final size:14
Alignment explanation
Indices: 735347--735376 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
735337 TATGGGAAAG
735347 AAATAACAATAATA
1 AAATAACAATAATA
735361 AAATAA-AATAATA
1 AAATAACAATAATA
735374 AAA
1 AAA
735377 ATAGATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAACAATAATA
Found at i:735384 original size:13 final size:14
Alignment explanation
Indices: 735347--735379 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
735337 TATGGGAAAG
735347 AAATAACAATAAT-A
1 AAATAA-AATAATAA
735361 AAATAAAATAATAA
1 AAATAAAATAATAA
735375 AAATA
1 AAATA
735380 GATAAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAAATAATAA
Found at i:736624 original size:15 final size:15
Alignment explanation
Indices: 736604--736654 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
736594 GACCCTGCAC
736604 AAAAATAAATGAAA-A
1 AAAAATAAAT-AAATA
*
736619 AAAAATAAATAAATT
1 AAAAATAAATAAATA
736634 AAAAAT-AA-AAATA
1 AAAAATAAATAAATA
*
736647 AATAATAA
1 AAAAATAA
736655 TAATATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 9 0.29
14 6 0.19
15 16 0.52
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (15 bp):
AAAAATAAATAAATA
Found at i:736645 original size:21 final size:19
Alignment explanation
Indices: 736606--736651 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 19
736596 CCCTGCACAA
*
736606 AAATAAATGAAAAAAAAAT
1 AAATAAATAAAAAAAAAAT
736625 AAATAAATTAAAAATAAAAAT
1 AAATAAA-TAAAAA-AAAAAT
736646 AAATAA
1 AAATAA
736652 TAATAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.29
20 5 0.21
21 12 0.50
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (19 bp):
AAATAAATAAAAAAAAAAT
Found at i:736657 original size:16 final size:17
Alignment explanation
Indices: 736604--736649 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
736594 GACCCTGCAC
* *
736604 AAAAATAAATGAAAAAAA
1 AAAAATAAAT-TAAAAAT
736622 AATAAATAAATTAAAAAT
1 AA-AAATAAATTAAAAAT
736640 AAAAATAAAT
1 AAAAATAAAT
736650 AATAATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.32
18 9 0.36
19 8 0.32
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (17 bp):
AAAAATAAATTAAAAAT
Found at i:736703 original size:26 final size:27
Alignment explanation
Indices: 736657--736707 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
736647 AATAATAATA
736657 ATATATATATATAAACGTTTTCAAAAAC
1 ATATATATATATAAACGTTTT-AAAAAC
*
736685 ATATA-ATATATAAA-TTTTTAAAA
1 ATATATATATATAAACGTTTTAAAA
736708 TGTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 4 0.18
27 9 0.41
28 5 0.23
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (27 bp):
ATATATATATATAAACGTTTTAAAAAC
Found at i:736713 original size:36 final size:36
Alignment explanation
Indices: 736669--736859 Score: 152
Period size: 38 Copynumber: 5.1 Consensus size: 36
736659 ATATATATAT
*
736669 AAACGTTTTCAAAAACATATAATATATAAATTTTTA
1 AAACGTTTTCAAAAACATATATTATATAAATTTTTA
* * * * *
736705 AAATGTTTTTTTTTAAAAAATATATATTATATATATTTTCA
1 AAACG-----TTTTCAAAAACATATATTATATAAATTTTTA
* * *
736746 AAATGGTTTTTAAAAATTATATATTATATAAATGTTTTCA
1 AAA-CGTTTTCAAAAA-CATATATTATATAAAT-TTTT-A
* ** *
736786 TAACGTTTTCAAAAGTATATATTATATATA-TTTTA
1 AAACGTTTTCAAAAACATATATTATATAAATTTTTA
*
736821 AAACGTTTTCAAAAACTATATATTATAT-AATTTTCA
1 AAACGTTTTCAAAAAC-ATATATTATATAAATTTTTA
736857 AAA
1 AAA
736860 AATATATTTT
Statistics
Matches: 124, Mismatches: 20, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
35 15 0.12
36 26 0.21
37 9 0.07
38 29 0.23
39 12 0.10
40 3 0.02
41 29 0.23
42 1 0.01
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.46
Consensus pattern (36 bp):
AAACGTTTTCAAAAACATATATTATATAAATTTTTA
Done.