genome.fa.s9077.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009077.1 Hibiscus syriacus cultivar Beakdansim tig00112516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204574

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3220--3256	13	2.7	14	91	4	58	27	29	27	16	1.97
3220--3256	7	5.4	7	90	6	58	27	29	27	16	1.97
3253--3290	5	7.8	5	82	5	51	2	18	55	23	1.55
3253--3292	14	2.8	14	88	3	53	5	17	55	22	1.61
9008--9091	21	4.0	21	79	0	96	42	2	22	32	1.66
9267--9310	19	2.3	19	96	0	79	31	20	31	15	1.94
9496--9639	21	6.9	21	78	0	153	33	24	1	40	1.64
9496--9639	42	3.4	42	83	0	171	33	24	1	40	1.64
9496--9639	63	2.3	63	82	0	189	33	24	1	40	1.64
11354--11495	73	1.9	73	88	0	212	29	14	14	41	1.85
11926--12018	30	3.1	30	79	0	96	35	4	36	23	1.75
12944--12972	2	14.5	2	100	0	58	48	0	0	51	1.00
17844--17911	9	7.0	9	71	15	55	13	26	22	38	1.91
17836--17921	30	2.8	30	89	5	120	13	29	22	34	1.93
20290--20415	22	5.7	22	82	5	130	23	36	30	9	1.87
20303--20415	9	11.9	9	72	18	54	23	37	30	8	1.85
20438--20471	14	2.4	14	95	0	59	35	32	26	5	1.81
20525--20589	28	2.3	28	94	0	112	24	24	20	30	1.98
21827--21861	18	1.9	18	88	0	52	54	0	17	28	1.43
25575--25617	4	10.0	4	85	14	59	25	46	27	0	1.53
25575--25617	9	5.0	8	86	13	59	25	46	27	0	1.53
25578--25635	22	2.6	22	88	0	80	25	39	29	5	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25572--25617	13	3.5	13	91	5	67	26	43	30	0	1.55
25666--25718	19	2.8	19	82	0	70	26	37	30	5	1.79
25755--25818	28	2.3	28	97	0	119	25	26	18	29	1.98
34951--35016	18	3.3	22	63	30	56	40	9	19	30	1.83
34938--35164	47	5.3	44	84	8	235	39	7	21	32	1.80
37975--38056	18	4.5	17	75	23	62	80	1	14	3	0.91
37972--38082	25	4.3	24	76	18	84	79	1	15	3	0.96
37996--38079	5	16.8	5	75	20	70	78	1	16	3	0.95
37972--38080	24	4.6	23	78	17	84	78	1	15	3	0.97
37993--38082	28	3.3	27	81	10	103	80	1	15	3	0.91
37996--38074	18	4.5	17	75	13	72	78	1	16	3	0.96
43417--43498	40	2.1	39	86	2	110	43	1	17	37	1.56
43996--44037	15	2.9	15	76	16	52	47	0	0	52	1.00
45383--45535	31	4.9	31	100	0	306	29	3	22	44	1.69
45405--45523	12	11.2	12	70	24	106	30	2	22	44	1.66
45386--45511	19	7.7	19	67	32	105	29	3	22	45	1.68
48006--48057	21	2.5	21	87	0	77	42	11	19	26	1.85
48233--48298	23	3.0	23	75	22	77	25	16	27	30	1.97
52186--52225	20	1.9	20	85	10	53	32	7	32	27	1.85
52278--52344	19	3.3	19	66	22	55	49	11	14	23	1.77
52277--52360	42	2.0	42	97	0	159	44	13	16	26	1.84
52477--52512	15	2.4	15	90	0	54	50	5	0	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56591--56675	43	2.0	42	97	2	161	43	14	16	25	1.85
56792--56827	15	2.4	15	90	0	54	50	5	0	44	1.25
59054--59265	76	2.8	76	79	8	243	29	11	20	38	1.88
59220--59290	25	2.8	25	93	2	115	30	7	25	36	1.83
59159--59366	101	2.1	101	85	0	281	30	7	22	39	1.82
59259--59551	76	3.9	76	88	0	406	30	10	19	39	1.84
59086--59434	177	2.0	177	87	1	511	29	9	20	39	1.84
59424--59685	134	2.0	134	84	1	346	29	11	18	40	1.85
59558--60112	76	7.3	76	87	1	707	27	10	20	41	1.84
59687--59880	25	7.7	25	67	16	89	26	9	22	41	1.85
60271--60504	69	3.4	69	75	4	224	29	20	27	23	1.98
70301--70341	17	2.3	19	83	12	59	26	12	0	60	1.31
86422--86564	71	2.0	71	100	0	286	43	20	12	23	1.86
86733--87000	85	3.2	85	76	11	242	31	18	19	30	1.96
86775--87068	85	3.5	85	76	10	228	32	17	18	30	1.94
88194--88260	27	2.5	26	83	7	89	50	22	4	22	1.66
88869--88896	2	14.0	2	100	0	56	50	0	0	50	1.00
93658--93704	19	2.5	19	100	0	94	25	25	10	38	1.88
94707--94795	44	2.0	44	86	4	126	39	28	13	19	1.89
95690--96023	83	4.0	84	76	6	304	32	16	15	35	1.91
97015--97250	76	3.1	75	83	3	265	29	11	19	39	1.86
97251--97766	76	6.8	76	88	0	701	28	9	19	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97452--97500	25	1.9	25	87	4	71	28	4	22	44	1.71
98844--99334	43	11.4	43	86	1	561	33	19	25	22	1.97
100199--100231	17	1.9	17	88	11	50	36	24	0	39	1.56
102468--102641	69	2.5	69	77	1	179	28	19	27	24	1.98
104115--104153	15	2.8	14	88	7	53	23	30	23	23	1.99
104146--104191	23	2.0	24	82	4	58	21	28	21	28	1.99
111360--112163	402	2.0	410	82	6	990	34	13	28	22	1.93
116390--116559	69	2.5	69	83	0	214	30	19	25	24	1.98
132696--132730	18	1.9	18	88	0	52	28	17	0	54	1.43
139838--139887	23	2.2	23	89	3	75	50	0	4	46	1.20
140825--140929	31	3.4	31	85	1	140	28	30	27	13	1.94
145125--145188	28	2.3	28	97	0	119	31	23	17	28	1.97
145856--146119	135	2.0	135	84	1	350	30	20	14	35	1.92
151867--152156	76	3.8	76	81	3	307	29	12	18	39	1.88
151867--152156	150	1.9	150	85	4	395	29	12	18	39	1.88
152462--152542	28	2.7	31	84	11	123	20	23	38	17	1.93
154402--154664	76	3.4	76	82	3	296	30	9	20	39	1.84
164386--164425	20	2.0	20	100	0	80	30	30	10	30	1.90
166798--167075	85	3.3	86	75	10	219	30	18	20	30	1.97
166862--167135	85	3.2	85	76	11	222	31	17	20	30	1.96
168281--168344	27	2.3	27	86	2	83	46	23	4	25	1.71
170487--170541	23	2.4	23	84	3	67	23	3	9	63	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171413--171608	97	2.0	97	100	0	392	42	14	9	33	1.78
171438--171589	50	3.1	50	62	25	124	41	15	9	33	1.80
179713--179797	44	1.9	44	81	9	102	42	25	11	20	1.86
180686--181012	83	3.9	83	75	5	266	34	15	14	34	1.89
182093--182781	76	9.3	76	78	9	476	28	9	19	42	1.83
182288--182780	228	2.2	228	85	1	675	28	9	19	43	1.82
182288--182782	76	6.5	76	88	0	612	28	9	19	43	1.82
182842--182885	16	2.8	16	96	0	79	38	13	15	31	1.87
183806--184296	43	11.4	43	86	1	552	32	18	25	23	1.97
185229--185261	17	1.9	17	88	11	50	36	24	0	39	1.56
186645--186697	20	2.7	20	85	2	63	43	18	16	20	1.88
187466--187701	69	3.4	69	79	1	267	29	20	26	23	1.99
191994--192039	23	2.0	24	82	4	58	21	28	21	28	1.99
195637--196349	353	2.0	353	86	3	1006	38	17	18	24	1.93
196332--196368	17	2.2	17	90	9	58	32	32	21	13	1.92
198805--198866	24	2.6	24	84	0	88	27	17	16	38	1.91
198796--198883	24	3.7	24	79	0	77	28	13	15	42	1.86
201687--201851	76	2.2	75	86	3	233	30	2	10	56	1.45
203171--203296	47	2.8	45	85	5	164	29	23	7	39	1.83
203401--203562	40	4.1	40	94	1	281	34	26	15	23	1.94

Tables:   1

The End!