Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000908.1 Hibiscus syriacus cultivar Beakdansim tig00001802_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 480356
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 2 of 3
Found at i:203966 original size:14 final size:14
Alignment explanation
Indices: 203947--204000 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
203937 AGAAATGACT
203947 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
203961 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
203980 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
203994 ATCGCAA
1 ATCGCAA
204001 TGCGAAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.30
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:203984 original size:33 final size:33
Alignment explanation
Indices: 203927--204022 Score: 156
Period size: 33 Copynumber: 2.8 Consensus size: 33
203917 AAAACAGACT
**
203927 ATCGCAATGCAGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
203961 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
203994 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
204023 CGAAACTAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
33 32 0.54
34 27 0.46
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:204018 original size:20 final size:19
Alignment explanation
Indices: 203960--204027 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 19
203950 GCAACGAGAG
203960 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
203979 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
203993 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
204013 AATCGCAACGCGAAA
1 AATCGCAATGCGAAA
204028 CTAAATTCGC
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
19 12 0.30
20 13 0.32
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:204098 original size:33 final size:34
Alignment explanation
Indices: 204044--204132 Score: 126
Period size: 33 Copynumber: 2.6 Consensus size: 34
204034 TCGCGTTGCA
204044 ATTTTCATTTTCGCATTGCGATTCTCTCGTTGTG
1 ATTTTCATTTTCGCATTGCGATTCTCTCGTTGTG
*
204078 ATTTTCATTTT-GCATTGCGATTCTCTCGTTGCG
1 ATTTTCATTTTCGCATTGCGATTCTCTCGTTGTG
** * *
204111 ATAGTCATTTCCGCGTTGCGAT
1 ATTTTCATTTTCGCATTGCGAT
204133 AGTCAATTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
33 29 0.59
34 20 0.41
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.46
Consensus pattern (34 bp):
ATTTTCATTTTCGCATTGCGATTCTCTCGTTGTG
Found at i:204129 original size:20 final size:20
Alignment explanation
Indices: 204104--204192 Score: 135
Period size: 20 Copynumber: 4.5 Consensus size: 20
204094 GCGATTCTCT
204104 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
204124 CGTTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
204144 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* *
204164 TGTTGCGATAGTCATATT-CA
1 CGTTGCGATAGTCAT-TTCCG
204184 CGTTGCGAT
1 CGTTGCGAT
204193 TTCCGCGTTG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:206646 original size:24 final size:24
Alignment explanation
Indices: 206619--206672 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
206609 TTGAAAAATC
*
206619 ATCAAAATCTGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
206643 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
206667 ATCAAA
1 ATCAAA
206673 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:206686 original size:24 final size:24
Alignment explanation
Indices: 206635--206686 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
206625 ATCTGAGTAT
** *
206635 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
206659 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
206683 TGAC
1 TGAC
206687 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:207538 original size:20 final size:20
Alignment explanation
Indices: 207513--207596 Score: 141
Period size: 20 Copynumber: 4.2 Consensus size: 20
207503 AAATTCAGTA
207513 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
*
207533 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
*
207553 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
*
207573 TTGCGATAGTCAGATTCGCG
1 TTGCGATAGTCAGAATCGCG
207593 TTGC
1 TTGC
207597 AATTTACATA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:207609 original size:20 final size:20
Alignment explanation
Indices: 207586--207698 Score: 163
Period size: 20 Copynumber: 5.7 Consensus size: 20
207576 CGATAGTCAG
* * *
207586 ATTCGCGTTGCAATTTACAT
1 ATTCGCATTGCGATTTACGT
207606 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
207626 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
207646 ATTCGTATTGCGATATACGT
1 ATTCGCATTGCGATTTACGT
*
207666 ATTCGCATTACGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
207686 ATTTGCATTGCGA
1 ATTCGCATTGCGA
207699 ATTAGAAAAA
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 83 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:207617 original size:40 final size:41
Alignment explanation
Indices: 207573--207698 Score: 134
Period size: 40 Copynumber: 3.1 Consensus size: 41
207563 CAGAATCTCG
*
207573 TTGCGATAGTCA-G-ATTCGCGTTGCAATTTACATATTCGCA
1 TTGCGATA-TCACGTATTCGCATTGCAATTTACATATTCGCA
* * * *
207613 TTGCGAT-TTACGTATTCGCATTGCGATTTACGTATTCGTA
1 TTGCGATATCACGTATTCGCATTGCAATTTACATATTCGCA
* * * *
207653 TTGCGATAT-ACGTATTCGCATTACGATTTACGTATTTGCA
1 TTGCGATATCACGTATTCGCATTGCAATTTACATATTCGCA
207693 TTGCGA
1 TTGCGA
207699 ATTAGAAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.03
39 1 0.01
40 71 0.95
41 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (41 bp):
TTGCGATATCACGTATTCGCATTGCAATTTACATATTCGCA
Found at i:207721 original size:21 final size:21
Alignment explanation
Indices: 207695--207740 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
207685 TATTTGCATT
207695 GCGAATTAGAAAAATCGCAAC
1 GCGAATTAGAAAAATCGCAAC
* *
207716 GCGAATTTGGAAAATCGCAAC
1 GCGAATTAGAAAAATCGCAAC
207737 GCGA
1 GCGA
207741 TAGTCAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.15
Consensus pattern (21 bp):
GCGAATTAGAAAAATCGCAAC
Found at i:208642 original size:2 final size:2
Alignment explanation
Indices: 208635--208665 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
208625 CCGCCCCGAT
208635 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
208666 TTTATATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:223853 original size:182 final size:181
Alignment explanation
Indices: 223560--224209 Score: 944
Period size: 182 Copynumber: 3.6 Consensus size: 181
223550 CGATACAAAT
* * * *
223560 TAAAAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGATAAAACCGGTGTC-ATTATGA
1 TAAAAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTCTCGA-AATGA
** *
223624 TAAAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTGTCGACACT
65 TAAAACCGGTAAAAAGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACT
* *
223689 TTTGTAATCTAAAAGATAAGAAGTTATAGCGCCTAAAAGGTGTCGATACTTTA
130 TTTGTAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAA-GTGTCGATACTTTA
* *
223742 TAAAAATGTGTCGATCCATAGCAATATAACAGGTAATAATATGACAAAACAGGTCTCGAAATGAT
1 TAAAAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTCTCGAAATGAT
*
223807 AAAACCGGTAAAAAGCTACCAGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTT
66 AAAACCGGTAAAAAGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTT
223872 TTGTAATTTAAAAGAGAAGAAGTTATAGCGCCTGAAAAGTGTCGATACTTTA
131 TTGTAATTTAAAAGAGAAGAAGTTATAGCGCCT-AAAAGTGTCGATACTTTA
* * * * * *
223924 TACAAATGTATCGATCCATAGTAATATATCCGGTAATAATATGACAAAAGAGGTCTCGAAATGAT
1 TAAAAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTCTCGAAATGAT
*
223989 AAAACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTT
66 AAAACCGGTAAAAAGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTT
* * *
224054 TCGTACTTTAAAAGAGAAGAAATTATAGCGCCTAAAAAGTGTCGATACTTTA
131 TTGTAATTTAAAAGAGAAGAAGTTATAGCGCCT-AAAAGTGTCGATACTTTA
* * * * * *
224106 -AGAAAATGTTTCGATCCATAACAATATAATAGGTAAAAATATGATAAAACCGGTATCGAAATGA
1 TA-AAAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTCTCGAAATGA
* ** * *
224170 CAAAACCGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCG
65 TAAAACCGGTAAAAAGCTACCGGATATATTGAAAGTGTCG
224210 GTACTTTAAT
Statistics
Matches: 423, Mismatches: 42, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
181 1 0.00
182 417 0.99
183 5 0.01
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (181 bp):
TAAAAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTCTCGAAATGAT
AAAACCGGTAAAAAGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTT
TTGTAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAGTGTCGATACTTTA
Found at i:225466 original size:106 final size:107
Alignment explanation
Indices: 225350--225542 Score: 266
Period size: 106 Copynumber: 1.8 Consensus size: 107
225340 ATGACAAATG
* * *
225350 ATATAATGTAATAGGTAAATTGAC-AATGTAACCAGTA-AACATATACC-GTTTAATTATAAAAC
1 ATATAATGTAATAGGTAAATT-ACTAATGTAACCAGTAGAA-ATATACCGGGTTAATGAGAAAAC
*
225412 AGGTTAACATAAAGTATCGACACTATTAGATTTTGTGTCGATAA
64 AGGTCAACATAAAGTATCGACACTATTAGATTTTGTGTCGATAA
* * * * *
225456 ATATAATGTAATAGGTAAATTTCTAATGTAACCGGTAGAAATATACCGGGTTCATGAGAGAATAG
1 ATATAATGTAATAGGTAAATTACTAATGTAACCAGTAGAAATATACCGGGTTAATGAGAAAACAG
225521 GTCAACATAAAGTATCGACACT
66 GTCAACATAAAGTATCGACACT
225543 TTGTTTAATT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
105 1 0.01
106 40 0.53
107 34 0.45
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (107 bp):
ATATAATGTAATAGGTAAATTACTAATGTAACCAGTAGAAATATACCGGGTTAATGAGAAAACAG
GTCAACATAAAGTATCGACACTATTAGATTTTGTGTCGATAA
Found at i:225915 original size:198 final size:199
Alignment explanation
Indices: 225450--225927 Score: 549
Period size: 198 Copynumber: 2.4 Consensus size: 199
225440 GATTTTGTGT
* * ** *
225450 CGATAAATATAATGTAATAGGTAAATTTCTAATGTAACCGG-TAGAAATATACCGGGTTCATGAG
1 CGATAATTATAATGTAATAGGTAAATTTATAATGTAACCGGTTA-AAATATACCCAGTTAATGAG
* * * *
225514 AGAATAGGTCAACATAAAGTATCGACACTTTGTTTAATTTGTGTCGATACATTTTTTCAAAATGA
65 AAAATAGGTCAACATAAAGTATCGACACTCTGTTAAATATGTGTCGATACATTTTTTCAAAATGA
*
225579 ATAGCAAACGAGGTGTACGCATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCTCGAAACAT
130 ATAGCAAACGAGGTGCACGCATAAAGTGTCGATACA-TTTTAAAAAGTATCGATCCTCGAAACAT
*
225644 CGAAAT
194 CGAAAC
* * * * *
225650 CGATAATTATTATATAACAGGTAAATTTACAATGTAACCGGTTAAAATATA-CCAGTTAATTAGA
1 CGATAATTATAATGTAATAGGTAAATTTATAATGTAACCGGTTAAAATATACCCAGTTAATGAGA
* * *
225714 AAATAGGTCTACATTATGTATCGACACTCT-TTAAATATGTGTCGATAC-TTTTTTCCAAAAT-A
66 AAATAGGTCAACATAAAGTATCGACACTCTGTTAAATATGTGTCGATACATTTTTT-CAAAATGA
* *
225776 A-AGCACAAACGAGTTGCACGCATAAAGTGTCGATACA-TTTAAAATTGTATCGATCCT-GAAAA
130 ATAG--CAAACGAGGTGCACGCATAAAGTGTCGATACATTTTAAAA-AGTATCGATCCTCG-AAA
225838 CATCGAAAC
191 CATCGAAAC
* * ** * * ** *
225847 CGATATTTATAATGTAATAGGTCAATTTATAATGTAATTGGTTTAAATTTACCCTTTTTATGAGA
1 CGATAATTATAATGTAATAGGTAAATTTATAATGTAACCGGTTAAAATATACCCAGTTAATGAGA
* *
225912 AAATATGTCAATATAA
66 AAATAGGTCAACATAA
225928 GCGCTACTTA
Statistics
Matches: 232, Mismatches: 39, Indels: 16
0.81 0.14 0.06
Matches are distributed among these distances:
196 10 0.04
197 71 0.31
198 73 0.31
199 34 0.15
200 42 0.18
201 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (199 bp):
CGATAATTATAATGTAATAGGTAAATTTATAATGTAACCGGTTAAAATATACCCAGTTAATGAGA
AAATAGGTCAACATAAAGTATCGACACTCTGTTAAATATGTGTCGATACATTTTTTCAAAATGAA
TAGCAAACGAGGTGCACGCATAAAGTGTCGATACATTTTAAAAAGTATCGATCCTCGAAACATCG
AAAC
Found at i:225951 original size:23 final size:23
Alignment explanation
Indices: 225922--225980 Score: 118
Period size: 23 Copynumber: 2.6 Consensus size: 23
225912 AAATATGTCA
225922 ATATAAGCGCTACTTATTACATT
1 ATATAAGCGCTACTTATTACATT
225945 ATATAAGCGCTACTTATTACATT
1 ATATAAGCGCTACTTATTACATT
225968 ATATAAGCGCTAC
1 ATATAAGCGCTAC
225981 CTAATTTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACTTATTACATT
Found at i:226039 original size:87 final size:87
Alignment explanation
Indices: 225942--226106 Score: 267
Period size: 87 Copynumber: 1.9 Consensus size: 87
225932 TACTTATTAC
* * * *
225942 ATTATATAAGCGCTACTTATTACATTATATAAGCGCTACCTAATTTGTTATTGTACTTGATAATA
1 ATTATATAAGCGCAACCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATA
*
226007 TTTTCGGTTAAATACCTATTTT
66 TTTTCAGTTAAATACCTATTTT
* *
226029 ATTATATAAGCGCAACCTATTACATTATCTAAGCACTACCTAATATGTTATTGTGCTTGATAATA
1 ATTATATAAGCGCAACCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATA
226094 TTTTCAGTTAAAT
66 TTTTCAGTTAAAT
226107 GATATAACAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (87 bp):
ATTATATAAGCGCAACCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATA
TTTTCAGTTAAATACCTATTTT
Found at i:226069 original size:23 final size:23
Alignment explanation
Indices: 226019--226070 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
226009 TTCGGTTAAA
** *
226019 TACCTATTTTATTATATAAGCGC
1 TACCTATTACATTATATAAGCAC
* *
226042 AACCTATTACATTATCTAAGCAC
1 TACCTATTACATTATATAAGCAC
226065 TACCTA
1 TACCTA
226071 ATATGTTATT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAGCAC
Found at i:231550 original size:684 final size:684
Alignment explanation
Indices: 230217--231584 Score: 1620
Period size: 684 Copynumber: 2.0 Consensus size: 684
230207 TTACTTAGAA
* * * * * *
230217 ACCACCGCGAAGGCGAAGGACAAGATGCAGAGTGGACTCCTTCTGTATGTTGTAATCTGCAAGAG
1 ACCACCACGAAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATGTTATAATCAGCAAGAG
* * *
230282 TTCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATTCCTTCC
66 TTCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGATGAGATTCCTTCC
* * * * * * * *
230347 TTGTCTTGAATCTTTTCCTTAACATTGTCTATGGTGTCTGAACTTTCAACCTCCAATGTTATTGT
131 TTGTCCTGAATCTTTGCCTTAACATTATCAATGGTATCCGAACTCTCAACCTCCAATGTAATTGT
* *
230412 CTTCCCGGTTAAGGTCTTTACAAAGATCTGCATCCCACCACGCAAGCGTAACACCAAGTGAAGGG
196 CTTCCCGGTGAAGGTCTTGACAAAGATCTGCATCCCACCACGCAAGCGTAACACCAAGTGAAGGG
* * * ** *
230477 TTGACTCCTTTTGGATATTATAGTCTGCCAATGTCCTCCCATCTTCAAGCTGCTTGCCGGCAAAG
261 TGGACTCCTTCTGGATATTATAGTCAGCCAATGTCCGACCATCTTCAAGCTGCTTGCCAGCAAAG
* * * * *
230542 ATGAGCCTTTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTTGCCTTCACGTTGTCAAT
326 ATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTAGCCTTCACATTATCAAT
* * * * * *
230607 CGTGTCTGAACTTTCGACCTCCAAAGTGATGGTTTTCCCGGTAAGAGTCTTTACAAAGATCTGCA
391 AGTGTCAGAACTTTCAACCTCCAAAGTGATCGTTTTCCCAGTAAGAGTCTTGACAAAGATCTGCA
*
230672 TACCACCACGCAGGCGCAACACCAAGTGAAGAGTCGACTCCTTTTGGATATTATAGTCAGCCAAC
456 TACCACCACGAAGGCGCAACACCAAGTGAAGAGTCGACTCCTTTTGGATATTATAGTCAGCCAAC
* ** * * *
230737 GTCCTTCCATCTTCAAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTGGTCTGGGGGGATACCCTC
521 GACCGGCCATCTTCAAGTTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGGGGGATACCCTC
* * * * * *
230802 CTTATCTTGGATCTTTGCCTTCACGTTGTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTGATGG
586 CTTATCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCCGAACTCTCAACCTCCAAAGTGATGG
* *
230867 TCTTTCCAGTAAGAGTCTTCACAAAGATCTGCAT
651 TCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT
* * * *
230901 ACCACCACGAAGGCGGAGAACCAGATGGAGAGTAGACTCCTTTTGGATGTTATAATCAGCAAGAG
1 ACCACCACGAAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATGTTATAATCAGCAAGAG
* * * * * * * * *
230966 TTCTTCCATCTTCAAGCTGTTTTCCTGCAAAAATCAATCTTTGTTGGTCTGATGAGATTCCTTCT
66 TTCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGATGAGATTCCTTCC
* * *
231031 TTGTCCTGAAT-TTTGGCTTTCACATTATCAATGGTATCCGAACTCTCGACCTCCAATGTAATTG
131 TTGTCCTGAATCTTT-GCCTTAACATTATCAATGGTATCCGAACTCTCAACCTCCAATGTAATTG
* * * * *
231095 TCTTTCCGGTG-AGAGTCTTGACAAAGATTTGCATGCCACCACG-AAGACG-AAGCACTAAGTGG
195 TCTTCCCGGTGAAG-GTCTTGACAAAGATCTGCATCCCACCACGCAAG-CGTAA-CACCAAGTGA
* * *
231157 AGGGTGGACTCCTTCTGGATGTTATAGTCAGCCAGTGTCCGACCATCTTCAAGCTGCTTTCCAGC
257 AGGGTGGACTCCTTCTGGATATTATAGTCAGCCAATGTCCGACCATCTTCAAGCTGCTTGCCAGC
* * * * *
231222 AAAGATAAGCCTCTGTTGGTCTGGAGGG-ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTA
322 AAAGATAAGCCTCTGCTGGTCTGG-GGGAATACCCTCCTTGTCTTGGATCTTAGCCTTCACATTA
* * *
231286 TCAATAGTGTCAGAGCTTTCAACCTCCAAGGTGATCGTCTTT-CCAGTCAGAGTCTTGACAAAGA
386 TCAATAGTGTCAGAACTTTCAACCTCCAAAGTGATCGT-TTTCCCAGTAAGAGTCTTGACAAAGA
* * * * * * * * * *
231350 TTTGCATACCACCTCGAAGTC-TAAGCACCAGGTGGAGCGTGGACT-CTTTCTGGATGTTGTAGT
450 TCTGCATACCACCACGAAGGCGCAA-CACCAAGTGAAGAGTCGACTCCTTT-TGGATATTATAGT
** * * * *
231413 CAGCCAGTGAGCGGCCATCTTCAAGTTGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCTGGTGGT
513 CAGCCAACGACCGGCCATCTTCAAGTTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGGGGG
* * * *
231478 ATTCCTTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCCGAACTCTCCACCT-CAA
578 ATACCCTCCTTATCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCCGAACTCTCAACCTCCAA
* * * * *
231542 GGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT
643 -AGTGATGGTCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT
231585 CTATTAAATC
Statistics
Matches: 567, Mismatches: 108, Indels: 18
0.82 0.16 0.03
Matches are distributed among these distances:
683 19 0.03
684 542 0.96
685 6 0.01
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (684 bp):
ACCACCACGAAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATGTTATAATCAGCAAGAG
TTCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGATGAGATTCCTTCC
TTGTCCTGAATCTTTGCCTTAACATTATCAATGGTATCCGAACTCTCAACCTCCAATGTAATTGT
CTTCCCGGTGAAGGTCTTGACAAAGATCTGCATCCCACCACGCAAGCGTAACACCAAGTGAAGGG
TGGACTCCTTCTGGATATTATAGTCAGCCAATGTCCGACCATCTTCAAGCTGCTTGCCAGCAAAG
ATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTAGCCTTCACATTATCAAT
AGTGTCAGAACTTTCAACCTCCAAAGTGATCGTTTTCCCAGTAAGAGTCTTGACAAAGATCTGCA
TACCACCACGAAGGCGCAACACCAAGTGAAGAGTCGACTCCTTTTGGATATTATAGTCAGCCAAC
GACCGGCCATCTTCAAGTTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGGGGGATACCCTC
CTTATCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCCGAACTCTCAACCTCCAAAGTGATGG
TCTTGCCAGTAAGAGTCTTAACAAAGATCTGCAT
Found at i:231577 original size:228 final size:227
Alignment explanation
Indices: 230217--231584 Score: 1259
Period size: 228 Copynumber: 6.0 Consensus size: 227
230207 TTACTTAGAA
* * * * * * * * * *
230217 ACCACCGCGAAGGCGAAGGA-CAAGATGCAGAGTGGACTCCTTCTGTATGTTGTAATCTGCAAGA
1 ACCACCACGAAGGCGAAGCACCAAG-TGGAGAGTGGACTCCTTTTGGATGTTATAGTCAGCCAGT
* * * * * *
230281 GTTCTCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAA-CCTCTGCTGATCTGGTGGGATTCCTT
65 GTCCTTCCATCTTCAAGCTGCTTGCCAGCAAAAAT-AAGCCTCTGCTGGTCTGGTGGGATTCCTT
* * * * * * *
230345 CCTTGTCTTGAATCTTTTCCTTAACATTGTCTATGGTGTCTGAACTTTCAACCTCCAATGTTATT
129 CCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTTTCAACCTCCAAAGTGATG
* *
230410 GTCTTCCCGGTTAAG-GTCTTTACAAAGATCTGCAT
194 GTCTTTCCAG-TAAGAGTC-TTACAAAGATCTGCAT
* * * * * * *
230445 CCCACCACGCAA-GCGTAA-CACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGCCAA
1 ACCACCACG-AAGGCG-AAGCACCAAGTGGAGAGTGGACTCCTTTTGGATGTTATAGTCAGCCAG
* * * * * * *
230508 TGTCCTCCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCTGG-GGGAATACCC
64 TGTCCTTCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGG-ATTCCT
* * *
230572 TCCTTGTCTTGGATCTTTGCCTTCACGTTGTCAATCGTGTCTGAACTTTCGACCTCCAAAGTGAT
128 TCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTTTCAACCTCCAAAGTGAT
*
230637 GGT-TTTCCCGGTAAGAGTCTTTACAAAGATCTGCAT
193 GGTCTTT-CCAGTAAGAGTC-TTACAAAGATCTGCAT
* * * * **
230673 ACCACCACGCAGGCGCAA-CACCAAGTGAAGAGTCGACTCCTTTTGGATATTATAGTCAGCCAAC
1 ACCACCACGAAGGCG-AAGCACCAAGTGGAGAGTGGACTCCTTTTGGATGTTATAGTCAGCCAGT
* * * * * * *
230737 GTCCTTCCATCTTCAAGTTGCTTGCCAGCAAAAATGAGTCTTTGCTGGTCTGGGGGGATACCCTC
65 GTCCTTCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCTTC
* * * * *
230802 CTTATCTTGGATCTTTGCCTTCACGTTGTCAATTGTGTCTGAGCTTTCAACTTCCAAAGTGATGG
130 CTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTTTCAACCTCCAAAGTGATGG
230867 TCTTTCCAGTAAGAGTCTTCACAAAGATCTGCAT
195 TCTTTCCAGTAAGAGTCTT-ACAAAGATCTGCAT
* * * * * *
230901 ACCACCACGAAGGCGGAGAACC-AGATGGAGAGTAGACTCCTTTTGGATGTTATAATCAGCAAGA
1 ACCACCACGAAGGCGAAGCACCAAG-TGGAGAGTGGACTCCTTTTGGATGTTATAGTCAGCCAGT
* * * * * * * * *
230965 GTTCTTCCATCTTCAAGCTGTTTTCCTGCAAAAATCAA-TCTTTGTTGGTCTGATGAGATTCCTT
65 GTCCTTCCATCTTCAAGCTGCTTGCCAGCAAAAAT-AAGCCTCTGCTGGTCTGGTGGGATTCCTT
* * * * * * * * * * *
231029 CTTTGTCCTGAAT-TTTGGCTTTCACATTATCAATGGTATCCGAACTCTCGACCTCCAATGTAAT
129 CCTTGTCTTGGATCTTT-GCCTTCACATTGTCAATGGTGTCTGAACTTTCAACCTCCAAAGTGAT
* * * *
231093 TGTCTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT
193 GGTCTTTCCAGTAAGAGTCTT-ACAAAGATCTGCAT
* * * * *
231129 GCCACCACGAAGACGAAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCCAGTG
1 ACCACCACGAAGGCGAAGCACCAAGTGGAGAGTGGACTCCTTTTGGATGTTATAGTCAGCCAGTG
** * * * * *
231194 TCCGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGTTGGTCTGGAGGGATTCCTTCT
66 TCCTTCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCTTCC
* * * * * * * *
231259 TTGTCTTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTTTCAACCTCCAAGGTGATCGT
131 TTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTTTCAACCTCCAAAGTGATGGT
* *
231324 CTTTCCAGTCAGAGTCTTGACAAAGATTTGCAT
196 CTTTCCAGTAAGAGTCTT-ACAAAGATCTGCAT
* * * * * *
231357 ACCACCTCGAAGTCTAAGCACCAGGTGGAGCGTGGACT-CTTTCTGGATGTTGTAGTCAGCCAGT
1 ACCACCACGAAGGCGAAGCACCAAGTGGAGAGTGGACTCCTTT-TGGATGTTATAGTCAGCCAGT
** ** * * *
231421 GAGCGGCCATCTTCAAGTTGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCTGGTGGTATTCCTTC
65 GTCCTTCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCTTC
* * * *
231486 CTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCCGAACTCTCCACCT-CAAGGGTGATG
130 CTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTTTCAACCTCCAA-AGTGATG
* * * * *
231550 GTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT
194 GTCTTTCCAGTAAGAGTCTT-ACAAAGATCTGCAT
231585 CTATTAAATC
Statistics
Matches: 953, Mismatches: 167, Indels: 40
0.82 0.14 0.03
Matches are distributed among these distances:
227 27 0.03
228 907 0.95
229 19 0.02
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (227 bp):
ACCACCACGAAGGCGAAGCACCAAGTGGAGAGTGGACTCCTTTTGGATGTTATAGTCAGCCAGTG
TCCTTCCATCTTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCTTCC
TTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTTTCAACCTCCAAAGTGATGGT
CTTTCCAGTAAGAGTCTTACAAAGATCTGCAT
Found at i:235474 original size:22 final size:22
Alignment explanation
Indices: 235430--235501 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 22
235420 ATTTAAAATT
*
235430 TAAACTATACAAATATACAAAAAAA
1 TAAAC-ATA-AAA-ATACTAAAAAA
235455 TAAACATAAAAATACT-AAAAA
1 TAAACATAAAAATACTAAAAAA
* * * *
235476 TAAAAATTAAATTACTAAAAAT
1 TAAACATAAAAATACTAAAAAA
235498 TAAA
1 TAAA
235502 AAAAATATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 18 0.44
22 12 0.29
23 3 0.07
24 3 0.07
25 5 0.12
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (22 bp):
TAAACATAAAAATACTAAAAAA
Found at i:235511 original size:22 final size:21
Alignment explanation
Indices: 235450--235507 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
235440 AAATATACAA
* *
235450 AAAAATAAACATAAAAATACT
1 AAAAATAAAAATAAAATTACT
*
235471 AAAAATAAAAATTAAATTACT
1 AAAAATAAAAATAAAATTACT
*
235492 AAAAATTAAAA-AAAAT
1 AAAAATAAAAATAAAAT
235508 ATTAACTAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 4 0.12
21 28 0.88
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAAATAAAAATAAAATTACT
Found at i:242594 original size:29 final size:29
Alignment explanation
Indices: 242561--242617 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
242551 TAAATTAATG
242561 TGATGTCATTGCTTACATCAATTTAGTTT
1 TGATGTCATTGCTTACATCAATTTAGTTT
242590 TGATGTCATTGCTTACATCAATTTAGTT
1 TGATGTCATTGCTTACATCAATTTAGTT
242618 AGGTGAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (29 bp):
TGATGTCATTGCTTACATCAATTTAGTTT
Found at i:247210 original size:29 final size:29
Alignment explanation
Indices: 247176--247234 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
247166 CCTAAATTAA
247176 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
247205 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
247234 T
1 T
247235 AGGTGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:248754 original size:46 final size:46
Alignment explanation
Indices: 248687--248779 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
248677 GAAAAGGGAA
248687 TTCATCTACTTCAATCTTTAAGTAGTTCATCTTTACCACCTGTTTC
1 TTCATCTACTTCAATCTTTAAGTAGTTCATCTTTACCACCTGTTTC
* *
248733 TTCATCTGCTTCGATCTTTAAGTAGTTCATCTTTACCACCTGTTTC
1 TTCATCTACTTCAATCTTTAAGTAGTTCATCTTTACCACCTGTTTC
248779 T
1 T
248780 ATCAGGTTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.46
Consensus pattern (46 bp):
TTCATCTACTTCAATCTTTAAGTAGTTCATCTTTACCACCTGTTTC
Found at i:251266 original size:33 final size:33
Alignment explanation
Indices: 251206--251275 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
251196 CATTTACAAC
* *
251206 TCCCTAGTTTTTCACGAGCTAAACTAGAA-CATT
1 TCCCTAGCTTTTCACGAGATAAACTAGAATC-TT
* * *
251239 TCCCTAGCTTTTCACGGGATTAGCTAGAATCTT
1 TCCCTAGCTTTTCACGAGATAAACTAGAATCTT
251272 TCCC
1 TCCC
251276 CTTTACAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.34
Consensus pattern (33 bp):
TCCCTAGCTTTTCACGAGATAAACTAGAATCTT
Found at i:251631 original size:20 final size:19
Alignment explanation
Indices: 251606--251680 Score: 75
Period size: 20 Copynumber: 4.0 Consensus size: 19
251596 CCGTTGTAGC
*
251606 CAGGGTGTATGGATACACT
1 CAGGGTGTATCGATACACT
*
251625 ACAGGGTATATCGATACACT
1 -CAGGGTGTATCGATACACT
*
251645 -A--GTGTATAGATACACT
1 CAGGGTGTATCGATACACT
*
251661 CATAGGTGTATCGATACACT
1 CA-GGGTGTATCGATACACT
251681 ATTTGCACTC
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
16 13 0.28
17 1 0.02
18 1 0.02
20 31 0.67
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (19 bp):
CAGGGTGTATCGATACACT
Found at i:251657 original size:36 final size:36
Alignment explanation
Indices: 251610--251681 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
251600 TGTAGCCAGG
* *
251610 GTGTATGGATACACTACA-GGGTATATCGATACACTA
1 GTGTATAGATACACT-CATAGGTATATCGATACACTA
*
251646 GTGTATAGATACACTCATAGGTGTATCGATACACTA
1 GTGTATAGATACACTCATAGGTATATCGATACACTA
251682 TTTGCACTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 2 0.06
36 30 0.94
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (36 bp):
GTGTATAGATACACTCATAGGTATATCGATACACTA
Found at i:252066 original size:21 final size:21
Alignment explanation
Indices: 252040--252094 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
252030 CCCATAACAG
252040 GGTGTATCGGTACACTATCAA
1 GGTGTATCGGTACACTATCAA
252061 GGTGTATCGGTACACTATCAA
1 GGTGTATCGGTACACTATCAA
*
252082 GGTGTATCAGTAC
1 GGTGTATCGGTAC
252095 CCCTTCATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (21 bp):
GGTGTATCGGTACACTATCAA
Found at i:252169 original size:20 final size:18
Alignment explanation
Indices: 252144--252215 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 18
252134 TTGCAGCCAT
252144 GGTGTATGGATACACTACA
1 GGTGTATGGATACACT-CA
*
252163 GGGTGTATCGATACACT-A
1 -GGTGTATGGATACACTCA
252181 -GTGTATGGATACACTCATA
1 GGTGTATGGATACACTC--A
252200 GGTGTATTGG-TACACT
1 GGTGTA-TGGATACACT
252216 ATTTATATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
16 14 0.31
18 1 0.02
19 1 0.02
20 26 0.58
21 3 0.07
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (18 bp):
GGTGTATGGATACACTCA
Found at i:252186 original size:16 final size:16
Alignment explanation
Indices: 252165--252195 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
252155 ACACTACAGG
252165 GTGTATCGATACACTA
1 GTGTATCGATACACTA
*
252181 GTGTATGGATACACT
1 GTGTATCGATACACT
252196 CATAGGTGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (16 bp):
GTGTATCGATACACTA
Found at i:252204 original size:36 final size:36
Alignment explanation
Indices: 252145--252216 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
252135 TGCAGCCATG
*
252145 GTGTATGGATACACTACAGGGTGTATCGATACACTA
1 GTGTATGGATACACTACAAGGTGTATCGATACACTA
* *
252181 GTGTATGGATACACT-CATAGGTGTATTGGTACACTA
1 GTGTATGGATACACTACA-AGGTGTATCGATACACTA
252217 TTTATATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 2 0.06
36 30 0.94
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (36 bp):
GTGTATGGATACACTACAAGGTGTATCGATACACTA
Found at i:255669 original size:10 final size:10
Alignment explanation
Indices: 255654--255680 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
255644 TTATATATTC
255654 GTTCATTTAT
1 GTTCATTTAT
255664 GTTCATTTAT
1 GTTCATTTAT
255674 GTTCATT
1 GTTCATT
255681 CATTTATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.11, T:0.59
Consensus pattern (10 bp):
GTTCATTTAT
Found at i:255684 original size:14 final size:14
Alignment explanation
Indices: 255665--255691 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
255655 TTCATTTATG
255665 TTCATTTATGTTCA
1 TTCATTTATGTTCA
255679 TTCATTTATGTTC
1 TTCATTTATGTTC
255692 GAACAAAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.15, G:0.07, T:0.59
Consensus pattern (14 bp):
TTCATTTATGTTCA
Found at i:255959 original size:10 final size:10
Alignment explanation
Indices: 255944--255974 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
255934 GTGTTTGTGT
255944 TGTTCGTTTA
1 TGTTCGTTTA
255954 TGTTCGTTTA
1 TGTTCGTTTA
*
255964 TGTTCATTTA
1 TGTTCGTTTA
255974 T
1 T
255975 TATGTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.13, C:0.10, G:0.16, T:0.61
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:257307 original size:44 final size:45
Alignment explanation
Indices: 257241--257330 Score: 173
Period size: 44 Copynumber: 2.0 Consensus size: 45
257231 AAGCAAAACT
257241 GATTTGAGCTTTTTCCCTGGGTTGTATTATTATTATTATTATTTG
1 GATTTGAGCTTTTTCCCTGGGTTGTATTATTATTATTATTATTTG
257286 GATTTGAGC-TTTTCCCTGGGTTGTATTATTATTATTATTATTTG
1 GATTTGAGCTTTTTCCCTGGGTTGTATTATTATTATTATTATTTG
257330 G
1 G
257331 TAATGTAACT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 36 0.80
45 9 0.20
ACGTcount: A:0.18, C:0.09, G:0.19, T:0.54
Consensus pattern (45 bp):
GATTTGAGCTTTTTCCCTGGGTTGTATTATTATTATTATTATTTG
Found at i:267002 original size:2 final size:2
Alignment explanation
Indices: 266997--267028 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
266987 GAAAATTATG
266997 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
267029 GATAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:268823 original size:17 final size:17
Alignment explanation
Indices: 268803--268859 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
268793 TTTTTTATAA
268803 ATTAAATATTTATATTT
1 ATTAAATATTTATATTT
* *
268820 ATTAAAT-CTTATATCT
1 ATTAAATATTTATATTT
*
268836 -TT-GATATTTATATTT
1 ATTAAATATTTATATTT
268851 ATTAAATAT
1 ATTAAATAT
268860 ACAATAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
14 2 0.06
15 9 0.29
16 9 0.29
17 11 0.35
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTAAATATTTATATTT
Found at i:268832 original size:31 final size:31
Alignment explanation
Indices: 268797--268857 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
268787 TTAATTTTTT
268797 TTATAAATTAAATATTTATATTTATTAAATC
1 TTATAAATTAAATATTTATATTTATTAAATC
** **
268828 TTATATCTTTGATATTTATATTTATTAAAT
1 TTATAAATTAAATATTTATATTTATTAAAT
268858 ATACAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (31 bp):
TTATAAATTAAATATTTATATTTATTAAATC
Found at i:269477 original size:2 final size:2
Alignment explanation
Indices: 269470--269524 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
269460 CTTTATAATT
269470 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
269512 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
269525 TTACAAATGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:272984 original size:18 final size:19
Alignment explanation
Indices: 272957--272996 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
272947 TACCATAAAA
272957 ATTT-AAAATTAT-TATTT
1 ATTTAAAAATTATATATTT
272974 ATTTAAAAATTATATATTT
1 ATTTAAAAATTATATATTT
272993 -TTTA
1 ATTTA
272997 TTGAAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 5 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTAAAAATTATATATTT
Found at i:272991 original size:22 final size:22
Alignment explanation
Indices: 272966--273008 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
272956 AATTTAAAAT
*
272966 TATTATTTATTTAAAAATTATA
1 TATTATTTATTGAAAAATTATA
* *
272988 TATTTTTTATTGAAAATTTAT
1 TATTATTTATTGAAAAATTAT
273009 TGTCGACTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TATTATTTATTGAAAAATTATA
Found at i:273140 original size:7 final size:7
Alignment explanation
Indices: 273128--273164 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
273118 TAATTACTAG
273128 AATTATA
1 AATTATA
273135 AATTATA
1 AATTATA
273142 AATTACTA
1 AATTA-TA
273150 GAATTATA
1 -AATTATA
273158 AATTATA
1 AATTATA
273165 TATAGAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 19 0.68
8 4 0.14
9 5 0.18
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (7 bp):
AATTATA
Found at i:273148 original size:23 final size:23
Alignment explanation
Indices: 273110--273164 Score: 92
Period size: 23 Copynumber: 2.3 Consensus size: 23
273100 AATGGATTCA
*
273110 AAATTATTTAATTACTAGAATTAT
1 AAATTA-TAAATTACTAGAATTAT
273134 AAATTATAAATTACTAGAATTAT
1 AAATTATAAATTACTAGAATTAT
273157 AAATTATA
1 AAATTATA
273165 TATAGAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 24 0.80
24 6 0.20
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (23 bp):
AAATTATAAATTACTAGAATTAT
Found at i:279623 original size:55 final size:55
Alignment explanation
Indices: 279549--279677 Score: 206
Period size: 55 Copynumber: 2.3 Consensus size: 55
279539 AATGATTCAT
* * *
279549 GAAGGACATACGAA-GAATGAAGAAATTTGAACCTGATTGAAGATCGATTCATGAA
1 GAAGGACAT-CAAATGAATGAACAAATTTGAACCTGATTGAAGAACGATTCATGAA
279604 GAAGGACATCAAATGAATGAACAAATTTGAACCTGATTGAAGAACGATTCATGAA
1 GAAGGACATCAAATGAATGAACAAATTTGAACCTGATTGAAGAACGATTCATGAA
*
279659 GAAGGACATCCAATGAATG
1 GAAGGACATCAAATGAATG
279678 GAGTTTGAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 3 0.04
55 66 0.96
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.21
Consensus pattern (55 bp):
GAAGGACATCAAATGAATGAACAAATTTGAACCTGATTGAAGAACGATTCATGAA
Found at i:283878 original size:123 final size:124
Alignment explanation
Indices: 283653--283912 Score: 396
Period size: 123 Copynumber: 2.1 Consensus size: 124
283643 AAGTCATGAT
* * *
283653 ATGTTGGGGCACGACTGTACCCACATCATGTTGAGATGACAAGATTCAGACCAAGGAGGCATAAA
1 ATGTT-GGGCACGACTGAACCCACATCATGTTGAGATGACAAGATACAGACCAAGAAGGCATAAA
283718 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGT-TAAGATA
65 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
* * **
283777 ATGTTGGGCATGACTGAACCCACATCATGTTGAGATGACAAGATACAGACCAAGAAGGCCTTGAG
1 ATGTTGGGCACGACTGAACCCACATCATGTTGAGATGACAAGATACAGACCAAGAAGGCATAAAG
* * * *
283842 AATGAGCCTTACAATTTGAGGTGTTGGGGTATTTTGAAGGCTCGTACCAGTATAAGATG
66 AATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
283901 ATGTTGTGGCAC
1 ATGTTG-GGCAC
283913 TAGTGAAGGC
Statistics
Matches: 122, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
123 101 0.83
124 17 0.14
125 4 0.03
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (124 bp):
ATGTTGGGCACGACTGAACCCACATCATGTTGAGATGACAAGATACAGACCAAGAAGGCATAAAG
AATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
Found at i:285094 original size:37 final size:36
Alignment explanation
Indices: 285048--285158 Score: 125
Period size: 37 Copynumber: 3.1 Consensus size: 36
285038 ATTGGAGCAA
*
285048 AATCAATCTTAAGCCTTCACCGAAGAGTAGTGAAGC
1 AATCGATCTTAAGCCTTCACCGAAGAGTAGTGAAGC
* *
285084 AAGTCGATCTTAAGTCTTCACCAAAGAGTAGTGAAGC
1 AA-TCGATCTTAAGCCTTCACCGAAGAGTAGTGAAGC
* * * * *
285121 AATCTATTTTAAACCTTCTCAGAAGAGT-GTTGAAGC
1 AATCGATCTTAAGCCTTCACCGAAGAGTAG-TGAAGC
285157 AA
1 AA
285159 ACCATCAGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
35 1 0.02
36 29 0.46
37 33 0.52
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (36 bp):
AATCGATCTTAAGCCTTCACCGAAGAGTAGTGAAGC
Found at i:285764 original size:56 final size:56
Alignment explanation
Indices: 285492--285970 Score: 528
Period size: 56 Copynumber: 8.7 Consensus size: 56
285482 AGTGAAGCAA
* * * * ** *
285492 AGAAGATTGTTCGAGTTCCATACTCCCT-AAAGAAAGAGGGAGCAAACCTATTT-T
1 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
* * * * * *
285546 AAAAGA-TGTCCGAGTTCTATAC-TCCTTAGAGAAAGAGGGAGCGAACCCGTTTGA
1 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
* * ** ** *
285600 AGAAGATGT-TT-GAGTTCTATACTCCCT-AGAGAAAGAGGGAGTAAACCCGTAAGA
1 AGAAGAT-TATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
* * * * **
285654 AGAAGA-TGTTCGAGTTCCATACTTTCTGAAAGAAAAAAGGGAGCGAACTGGTTTGC
1 AGAAGATTATTCGAGTTCTATACTTCCTGAAAG-AAAGAGGGAGCGAACCCGTTTGC
* *
285710 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGAAGCGAACCCGTTTGT
1 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
* *
285766 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGAAGCGAACCCGTTTGT
1 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
*
285822 AGAAGATTATTCGAGTTATATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
1 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
* * * *
285878 AGAAGAATATTCGAGTTCTATACTTCCTGAAAGAAAGAGGAAGCGAA-CCATTCGC
1 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
* **
285933 AGAAGATTATTCGAGTTCCATAC-TCCCAAAAGAAAGAG
1 AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAG
285971 CGAACCTGTA
Statistics
Matches: 367, Mismatches: 48, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.01
53 37 0.10
54 76 0.21
55 34 0.09
56 193 0.53
57 23 0.06
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (56 bp):
AGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
Found at i:286122 original size:55 final size:55
Alignment explanation
Indices: 285985--286711 Score: 901
Period size: 55 Copynumber: 13.3 Consensus size: 55
285975 CCTGTAGGAA
* * *
285985 GAAGATTGTTCGAGTCTTATACTCTCTGAACGAATAGAGAGCAGACACGATT-AT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* *
286039 GAAGATTGTTTGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* * *
286094 GAAGATTGTCCGAGTCTTATACTCTCTGAACGAATAGAGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* ** * *
286149 GAAGATTGTTCGAGTCTTATACTCTCTAAACAAATAGGGAACAGACACGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* * *
286204 GAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCGGACACGA-TGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
** *
286258 GAAGATTGTTCGAGTCTTATACTCTCTGAAAAAATAGGGAGCAGACACGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* * * * * **
286313 GAAGATTATTCGAGT-TCTATACT-TCCTGAAAGAAAGAGGGAGC-GAACCCGTTTGCA
1 GAAGATTGTTCGAGTCT-TATACTCT-CTG-AAGGAATAGGGAGCAG-ACACGATTGTT
* * * * * * *
286369 GAAGATTATTCAAGTCTCATATTCTCTGAAGAAATAGGGAGCATACATGA-TGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* ** * *
286423 GAAGATTGTTTGAGTCTTATACTCTCTGAAAAAATAGGGAGCATACACGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* * * *
286478 GAAGATTGTTCGAGTCTCATATTCTCTGAAGGAATAGGGAGTAGACACGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* * *
286533 GAAGATTGTTCGAGTCTTGTATTCTCTGAAGGAATAGGGAGCAGACACAATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
*
286588 GAAGATTGTTCGAGTCTTATACTCTCTGAATGAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
* * * * *
286643 AAAGATTGTTCGAGTCTTATACTCTCTGAA-GAATAGAGAGCAGAGATGTTTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
*
286697 GAAGATTGTACGAGT
1 GAAGATTGTTCGAGT
286712 TCCATGCAAC
Statistics
Matches: 589, Mismatches: 74, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
54 179 0.30
55 369 0.63
56 39 0.07
57 2 0.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
Found at i:286375 original size:165 final size:167
Alignment explanation
Indices: 285655--286680 Score: 813
Period size: 165 Copynumber: 6.2 Consensus size: 167
285645 CCCGTAAGAA
* * ** *
285655 GAAGA-TGTTCGAGTTCCATACTT-TCTGAAAGAAAAAAGGGAGCGA-ACTGGTTTGCAGAAGAT
1 GAAGATTGTTCGAG-TCTATACTTCTCTGAAAG-AAAGAGGGAGCGAGACACGATTGCAGAAGAT
* * * * * *
285717 TATTCGAGT-TCTATACT-TCCTGAAAGAAAGAGGAAGC-GAACCCGTTTGTAGAAGATTATTCG
64 TATTCGAGTCTC-ATACTCT-CTG-AAGAAATAGGGAGCAG-ACACGATTGTTGAAGATTGTTCG
* * * * * *
285779 AGT-TCTATACT-TCCTGAAAGAAAGAGGAAGC-GAACCCGTTTGTA
125 AGTCT-TATACTCT-CTGAAA-AAATAGGGAGCAG-ACACGATTATT
* * * * *
285823 GAAGATTATTCGAGTTATATACTTC-CTGAAAGAAAGAGGGAGCGA-ACCCGTTTGCAGAAGAAT
1 GAAGATTGTTCGAG-TCTATACTTCTCTGAAAGAAAGAGGGAGCGAGACACGATTGCAGAAGATT
* * * ** *
285886 ATTCGAGT-TCTATACT-TCCTGAAAGAAAGAGGAAGC-GA-ACCATTCGCAGAAGATTATTCGA
65 ATTCGAGTCTC-ATACTCT-CTG-AAGAAATAGGGAGCAGACACGATT-GTTGAAGATTGTTCGA
* * * **
285947 GT-TCCATACTC-C-CAAAAGAA-A--GAGC-GA-AC-CTGTAGGAA
126 GTCT-TATACTCTCTGAAAA-AATAGGGAGCAGACACGAT-TA--TT
*
285985 GAAGATTGTTCGAGTCTTATAC-TCTCTGAACGAATAGA--GAGC-AGACACGATT--ATGAAGA
1 GAAGATTGTTCGAGTC-TATACTTCTCTGAAAGAA-AGAGGGAGCGAGACACGATTGCA-GAAGA
* * * * * *
286044 TTGTTTGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTATTGAAGATTGTCCGAGT
63 TTATTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGT
** * *
286109 CTTATACTCTCTGAACGAATAGAGAGCAGACACGATTGTT
128 CTTATACTCTCTGAAAAAATAGGGAGCAGACACGATTATT
* * * ***
286149 GAAGATTGTTCGAGTCTTATAC-TCTCT-AAACAAATAGGGAAC-AGACACGATTATTGAAGATT
1 GAAGATTGTTCGAGTC-TATACTTCTCTGAAAGAAAGAGGGAGCGAGACACGATTGCAGAAGATT
* *
286211 GTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCGGACACGA-TGTTGAAGATTGTTCGAGTCT
65 ATTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCT
286275 TATACTCTCTGAAAAAATAGGGAGCAGACACGATTATT
130 TATACTCTCTGAAAAAATAGGGAGCAGACACGATTATT
* * *
286313 GAAGATTATTCGAGTTCTATACTTC-CTGAAAGAAAGAGGGAGCGA-ACCCGTTTGCAGAAGATT
1 GAAGATTGTTCGAG-TCTATACTTCTCTGAAAGAAAGAGGGAGCGAGACACGATTGCAGAAGATT
* * * * *
286376 ATTCAAGTCTCATATTCTCTGAAGAAATAGGGAGCATACATGA-TGTTGAAGATTGTTTGAGTCT
65 ATTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCT
*
286440 TATACTCTCTGAAAAAATAGGGAGCATACACGATTATT
130 TATACTCTCTGAAAAAATAGGGAGCAGACACGATTATT
* * * ***
286478 GAAGATTGTTCGAGTCTCATA-TTCTCTG-AAGGAATAGGGAG-TAGACACGATTATTGAAGATT
1 GAAGATTGTTCGAGTCT-ATACTTCTCTGAAAGAAAGAGGGAGCGAGACACGATTGCAGAAGATT
* ** * * *
286540 GTTCGAGTCTTGTATTCTCTGAAGGAATAGGGAGCAGACACAATTGTTGAAGATTGTTCGAGTCT
65 ATTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCT
** *
286605 TATACTCTCTGAATGAATAGGGAGCAGACACGATTGTT
130 TATACTCTCTGAAAAAATAGGGAGCAGACACGATTATT
*
286643 AAAGATTGTTCGAGTCTTATAC-TCTCTG-AAGAATAGAG
1 GAAGATTGTTCGAGTC-TATACTTCTCTGAAAGAA-AGAG
286681 AGCAGAGATG
Statistics
Matches: 716, Mismatches: 101, Indels: 84
0.79 0.11 0.09
Matches are distributed among these distances:
159 13 0.02
160 44 0.06
161 25 0.03
162 36 0.05
163 8 0.01
164 184 0.26
165 277 0.39
166 12 0.02
167 26 0.04
168 69 0.10
169 22 0.03
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (167 bp):
GAAGATTGTTCGAGTCTATACTTCTCTGAAAGAAAGAGGGAGCGAGACACGATTGCAGAAGATTA
TTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTT
ATACTCTCTGAAAAAATAGGGAGCAGACACGATTATT
Found at i:286727 original size:384 final size:382
Alignment explanation
Indices: 285984--286744 Score: 1071
Period size: 384 Copynumber: 2.0 Consensus size: 382
285974 ACCTGTAGGA
* * *
285984 AGAAGATTGTTCGAGTCTTATACTCTCTGAACGAATAGAGAGCAGACACGATTATGAAGATTGTT
1 AGAAGATTATTCAAGTCTCATACTCTCTGAACGAATAGAGAGCAGACACGATTATGAAGATTGTT
** *
286049 TGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTATTGAAGATTGTCCGAGTCTTAT
66 TGAGTCTTATACTCTCTGAAAAAATAGGGAGCAGACACGATTATTGAAGATTGTCCGAGTCTCAT
*
286114 ACTCTCTGAACGAATAGAGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTAAA
131 ACTCTCTGAACGAATAGAGAGCAGACACGATTATTGAAGATTGTTCGAGTCTTATACTCTCTAAA
*
286179 CAAATAGGGAACAGACACGATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGA
196 CAAATAGGGAACAGACACAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGA
* * *
286244 GCGGACACGATGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAAAAATAGGGAGCAGACACGAT
261 GCAGACACGATGTTAAAGATTGTTCGAGTCTTATACTCTCTGAAAAAATAGAGAGCAGACACGAT
* * **
286309 TATTGAAGATTATTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGTTTGC
326 TATTGAAGATTATACGAGTTCCATACAACCTG-AA-AAAGAGGGAGCGAACCCGTTTGC
* * * *
286368 AGAAGATTATTCAAGTCTCATATTCTCTGAA-GAAATAGGGAGCATACATGATGT-TGAAGATTG
1 AGAAGATTATTCAAGTCTCATACTCTCTGAACG-AATAGAGAGCAGACACGAT-TATGAAGATTG
* *
286431 TTTGAGTCTTATACTCTCTGAAAAAATAGGGAGCATACACGATTATTGAAGATTGTTCGAGTCTC
64 TTTGAGTCTTATACTCTCTGAAAAAATAGGGAGCAGACACGATTATTGAAGATTGTCCGAGTCTC
* * * * * * *
286496 ATATTCTCTGAAGGAATAGGGAGTAGACACGATTATTGAAGATTGTTCGAGTCTTGTATTCTCTG
129 ATACTCTCTGAACGAATAGAGAGCAGACACGATTATTGAAGATTGTTCGAGTCTTATACTCTCTA
** * * *
286561 AAGGAATAGGGAGCAGACACAATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAATG-AATAG
194 AACAAATAGGGAACAGACACAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAA-GAAATAG
* *
286625 GGAGCAGACACGATTGTTAAAGATTGTTCGAGTCTTATACTCTCTG-AAGAATAGAGAGCAGAGA
258 GGAGCAGACACGA-TGTTAAAGATTGTTCGAGTCTTATACTCTCTGAAAAAATAGAGAGCAGACA
* * * * * *
286689 TGTTTGTTGAAGATTGTACGAGTTCCATGCAACCTGAAAAATAGGGAGCGAACCCG
322 CGATTATTGAAGATTATACGAGTTCCATACAACCTGAAAAAGAGGGAGCGAACCCG
286745 CTGATCGAAG
Statistics
Matches: 332, Mismatches: 41, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
382 17 0.05
383 3 0.01
384 279 0.84
385 33 0.10
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (382 bp):
AGAAGATTATTCAAGTCTCATACTCTCTGAACGAATAGAGAGCAGACACGATTATGAAGATTGTT
TGAGTCTTATACTCTCTGAAAAAATAGGGAGCAGACACGATTATTGAAGATTGTCCGAGTCTCAT
ACTCTCTGAACGAATAGAGAGCAGACACGATTATTGAAGATTGTTCGAGTCTTATACTCTCTAAA
CAAATAGGGAACAGACACAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGA
GCAGACACGATGTTAAAGATTGTTCGAGTCTTATACTCTCTGAAAAAATAGAGAGCAGACACGAT
TATTGAAGATTATACGAGTTCCATACAACCTGAAAAAGAGGGAGCGAACCCGTTTGC
Found at i:290821 original size:21 final size:23
Alignment explanation
Indices: 290797--290853 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 23
290787 TCTTAAAAAT
290797 TTAAAATTTTATATTT-TTT-TA
1 TTAAAATTTTATATTTATTTCTA
* * *
290818 TTAAAAATTTATTTTTATTTCTC
1 TTAAAATTTTATATTTATTTCTA
290841 TTAAAATTTTATA
1 TTAAAATTTTATA
290854 AGTTCAAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 14 0.48
22 3 0.10
23 12 0.41
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TTAAAATTTTATATTTATTTCTA
Found at i:290878 original size:30 final size:30
Alignment explanation
Indices: 290831--290922 Score: 132
Period size: 30 Copynumber: 3.0 Consensus size: 30
290821 AAAATTTATT
*
290831 TTTATTTCTCTTAAAATTTTATAAGTTCAAG
1 TTTATTTCTC-TAAAATTTTATAAGTTCAAA
290862 TTTATTTCTCTAAAATTTTATAAGTTCAAA
1 TTTATTTCTCTAAAATTTTATAAGTTCAAA
* *
290892 TTCGA-TCCTCTAAAATTTTATAAGTTCAAA
1 TT-TATTTCTCTAAAATTTTATAAGTTCAAA
290922 T
1 T
290923 GCGCCTCCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
30 46 0.81
31 11 0.19
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (30 bp):
TTTATTTCTCTAAAATTTTATAAGTTCAAA
Found at i:291486 original size:2 final size:2
Alignment explanation
Indices: 291479--291522 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
291469 ATAGCAACTA
291479 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
291521 AT
1 AT
291523 TAAAAAGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:294810 original size:31 final size:31
Alignment explanation
Indices: 294775--294852 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
294765 TCAAAAAGCA
* * *
294775 TAAGTTTTGGTCATTTACGTTATTGTTTTAT
1 TAAGTTTTGGTCACTTACGTAATCGTTTTAT
*
294806 TAAGTTTTGGTTACTTACGTAATCGTTTTAT
1 TAAGTTTTGGTCACTTACGTAATCGTTTTAT
*
294837 TAAGTTTTGATCACTT
1 TAAGTTTTGGTCACTT
294853 GGATGTTGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.22, C:0.09, G:0.15, T:0.54
Consensus pattern (31 bp):
TAAGTTTTGGTCACTTACGTAATCGTTTTAT
Found at i:295462 original size:22 final size:20
Alignment explanation
Indices: 295430--295475 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
295420 TACTTTGGGT
*
295430 AGTATCGATACCCTTCTATAAG
1 AGTATCAATACCC-TC-ATAAG
*
295452 AGTATCAATACTCTCATAAG
1 AGTATCAATACCCTCATAAG
295472 AGTA
1 AGTA
295476 AGGATACCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.41
21 2 0.09
22 11 0.50
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (20 bp):
AGTATCAATACCCTCATAAG
Found at i:297522 original size:45 final size:46
Alignment explanation
Indices: 297458--297561 Score: 167
Period size: 45 Copynumber: 2.3 Consensus size: 46
297448 GGTGCACTAA
* *
297458 GAGTGCATCGATGTATAAAATGCATTCGATGTTTT-A-AAATAGCCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAA-ACCCT
297503 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCT
297549 GAGTGCATCGATG
1 GAGTGCATCGATG
297562 ATTGGTATGT
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
45 34 0.62
46 18 0.33
47 3 0.05
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (46 bp):
GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCT
Found at i:301610 original size:17 final size:18
Alignment explanation
Indices: 301580--301618 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
301570 GTTTTTCATG
301580 AAAACAACATAATTGAAA
1 AAAACAACATAATTGAAA
* *
301598 AAAACATCA-AATTTAAA
1 AAAACAACATAATTGAAA
301615 AAAA
1 AAAA
301619 AATAAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.69, C:0.10, G:0.03, T:0.18
Consensus pattern (18 bp):
AAAACAACATAATTGAAA
Found at i:309849 original size:18 final size:18
Alignment explanation
Indices: 309826--309868 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
309816 TAAAGAAGAA
309826 ACATCGAATACAATTAGT
1 ACATCGAATACAATTAGT
309844 ACATCGAATACAATTAGT
1 ACATCGAATACAATTAGT
*
309862 GCATCGA
1 ACATCGA
309869 TGCACCCCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (18 bp):
ACATCGAATACAATTAGT
Found at i:311217 original size:32 final size:31
Alignment explanation
Indices: 311175--311278 Score: 113
Period size: 32 Copynumber: 3.3 Consensus size: 31
311165 AGGAGTTGAG
*
311175 GGTTACCTATGTCTTTC-GAGACATATGGACA
1 GGTTACCTATGTCCTTCAG-GACATATGGACA
311206 GTGTTACCTATGTCCTTCAGGACATATGGACA
1 G-GTTACCTATGTCCTTCAGGACATATGGACA
* * *
311238 GGATTACCTATGTTC-TAAGGAACATATGAACA
1 GG-TTACCTATGTCCTTCAGG-ACATATGGACA
*
311270 GTTTACCTA
1 GGTTACCTA
311279 GGTTATTTGA
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
31 13 0.20
32 50 0.78
33 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (31 bp):
GGTTACCTATGTCCTTCAGGACATATGGACA
Found at i:311525 original size:35 final size:35
Alignment explanation
Indices: 311444--311537 Score: 97
Period size: 35 Copynumber: 2.7 Consensus size: 35
311434 ATAACATTGA
* *
311444 ATAT-AATGTATATGATGTATATATGTGTTTTGTG
1 ATATGAATGTATATGATATATATATGTGTTTAGTG
311478 ATATGAAT-TATATGATATGATATATGTGTGTTAGTG
1 ATATGAATGTATATGATAT-ATATATGTGT-TTAGTG
* *
311514 AT-T-ATTGTATATGTTATAATATAT
1 ATATGAATGTATATGATAT-ATATAT
311538 ATGATATGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
34 15 0.29
35 29 0.57
36 7 0.14
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (35 bp):
ATATGAATGTATATGATATATATATGTGTTTAGTG
Found at i:316097 original size:32 final size:31
Alignment explanation
Indices: 316055--316130 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
316045 AAGAGTCGAG
**
316055 GGTTACCTATGTGTTTCGAGACATATGGACAA
1 GGTTACCTATGTCCTTCGAGACATATGGAC-A
* *
316087 TGTTACCTATGTCCTTCGGGACATATGGACA
1 GGTTACCTATGTCCTTCGAGACATATGGACA
316118 GGATTACCTATGT
1 GG-TTACCTATGT
316131 TTTAAGGAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 2 0.05
32 36 0.95
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (31 bp):
GGTTACCTATGTCCTTCGAGACATATGGACA
Found at i:316607 original size:44 final size:43
Alignment explanation
Indices: 316557--316652 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 43
316547 GGCCTTGTGC
** *
316557 ATCGATGCTTATTC-AAGGAGTGCATCGGTGCAC-CTTAATGGTGT
1 ATCGATGCACATTCAAAGGA-TGCATCGATGCACTCTTAA--GTGT
*
316601 ATCGATGCACATTCAAAGGATGCATCGATGCACTGTTAAGTGT
1 ATCGATGCACATTCAAAGGATGCATCGATGCACTCTTAAGTGT
316644 ATCGATGCA
1 ATCGATGCA
316653 TTAAGCACAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
43 13 0.28
44 24 0.52
45 9 0.20
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
ATCGATGCACATTCAAAGGATGCATCGATGCACTCTTAAGTGT
Found at i:316609 original size:21 final size:20
Alignment explanation
Indices: 316580--316652 Score: 58
Period size: 23 Copynumber: 3.5 Consensus size: 20
316570 CAAGGAGTGC
* *
316580 ATCGGTGCACCTTAATGGTGT
1 ATCGATGCACATTAA-GGTGT
*
316601 ATCGATGCACATTCAAAGGATGC
1 ATCGATGCACATT--AAGG-TGT
*
316624 ATCGATGCACTGTTAA-GTGT
1 ATCGATGCAC-ATTAAGGTGT
316644 ATCGATGCA
1 ATCGATGCA
316653 TTAAGCACAA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 11 0.26
21 12 0.28
22 4 0.09
23 14 0.33
24 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (20 bp):
ATCGATGCACATTAAGGTGT
Found at i:316628 original size:23 final size:23
Alignment explanation
Indices: 316554--316633 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 23
316544 CATGGCCTTG
**
316554 TGCATCGATGCTTATTC-AAGGA
1 TGCATCGATGCACATTCAAAGGA
* * *
316576 GTGCATCGGTGCACCTT-AATGG-
1 -TGCATCGATGCACATTCAAAGGA
*
316598 TGTATCGATGCACATTCAAAGGA
1 TGCATCGATGCACATTCAAAGGA
316621 TGCATCGATGCAC
1 TGCATCGATGCAC
316634 TGTTAAGTGT
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
21 13 0.30
22 4 0.09
23 27 0.61
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (23 bp):
TGCATCGATGCACATTCAAAGGA
Found at i:322447 original size:45 final size:46
Alignment explanation
Indices: 322383--322489 Score: 173
Period size: 45 Copynumber: 2.3 Consensus size: 46
322373 GGTGCACTAA
* *
322383 GAGTGCATCGATGCATAAAATGTATTCGATGTTTT-A-AAATAGCCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAA-ACCCT
322428 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCT
1 GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCT
322474 GAGTGCATCGATGCAT
1 GAGTGCATCGATGCAT
322490 GGTATGTGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
45 34 0.59
46 21 0.36
47 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (46 bp):
GAGTGCATCGATGCATAAAATGCATTCGATGTTTTCATAAAACCCT
Found at i:329094 original size:43 final size:43
Alignment explanation
Indices: 329046--329131 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
329036 AAACTTAACT
* * * * *
329046 TTAAAGTAATAATTTATAAATACACTAAATTAACTTATTATAA
1 TTAAAGTAACAATTCACAAATACACCAAATTAACATATTATAA
* * *
329089 TTAAAGTTACAATTCACAAATATACCAAATTGACATATTATAA
1 TTAAAGTAACAATTCACAAATACACCAAATTAACATATTATAA
329132 AAAAATTACA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.36
Consensus pattern (43 bp):
TTAAAGTAACAATTCACAAATACACCAAATTAACATATTATAA
Found at i:331826 original size:14 final size:16
Alignment explanation
Indices: 331792--331830 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
331782 AAAAGTTATG
331792 TTCTTCTTAATCGTAC
1 TTCTTCTTAATCGTAC
331808 GTTCTTCTTAATCG-A-
1 -TTCTTCTTAATCGTAC
331823 TTCTTCTT
1 TTCTTCTT
331831 TTCTCTTGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.36
16 1 0.05
17 13 0.59
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (16 bp):
TTCTTCTTAATCGTAC
Found at i:337021 original size:30 final size:30
Alignment explanation
Indices: 336987--337055 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
336977 TTGGGATGAT
336987 TTTGAAGCTAAATGGGCTAGGGTATTTATA
1 TTTGAAGCTAAATGGGCTAGGGTATTTATA
337017 TTTGAAGCTAAATGGGCTAGGGTATTTATA
1 TTTGAAGCTAAATGGGCTAGGGTATTTATA
*
337047 GTTGAAGCT
1 TTTGAAGCT
337056 TAGGGACTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.07, G:0.28, T:0.36
Consensus pattern (30 bp):
TTTGAAGCTAAATGGGCTAGGGTATTTATA
Found at i:341270 original size:16 final size:17
Alignment explanation
Indices: 341242--341273 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
341232 CGTATCGTCG
341242 ACAAAATTTCACTATTC
1 ACAAAATTTCACTATTC
341259 ACAAAA-TTCACTATT
1 ACAAAATTTCACTATT
341274 TACATGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (17 bp):
ACAAAATTTCACTATTC
Found at i:345251 original size:3 final size:3
Alignment explanation
Indices: 345243--345267 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
345233 ATAAGAATGA
345243 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
345268 GTTTATATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:348674 original size:15 final size:15
Alignment explanation
Indices: 348654--348688 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
348644 CCGTAAGACC
*
348654 ACTACGTCCCGAAGA
1 ACTACGTCCCAAAGA
*
348669 ACTACGTCCCAAAGG
1 ACTACGTCCCAAAGA
348684 ACTAC
1 ACTAC
348689 AATACCCTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.34, G:0.17, T:0.14
Consensus pattern (15 bp):
ACTACGTCCCAAAGA
Found at i:349294 original size:2 final size:2
Alignment explanation
Indices: 349287--349352 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
349277 ACCAATTCTG
349287 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
349329 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
349353 CTTACTCATG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:350258 original size:12 final size:12
Alignment explanation
Indices: 350241--350277 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
350231 TGATGACAAG
350241 TCAAATTTAACT
1 TCAAATTTAACT
*
350253 TCAAATTCAACT
1 TCAAATTTAACT
350265 TCAAATTTAACT
1 TCAAATTTAACT
350277 T
1 T
350278 ATCAACACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (12 bp):
TCAAATTTAACT
Found at i:351172 original size:23 final size:23
Alignment explanation
Indices: 351124--351173 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
351114 ATCATGACTA
*
351124 TTCATGAAAAATAATTAAGTCTT
1 TTCATGAAAAATAATTAAGTCAT
* **
351147 TTCATGAAAAATAGTTATTTCAT
1 TTCATGAAAAATAATTAAGTCAT
351170 TTCA
1 TTCA
351174 CCCCAAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (23 bp):
TTCATGAAAAATAATTAAGTCAT
Found at i:359830 original size:94 final size:93
Alignment explanation
Indices: 359670--359851 Score: 276
Period size: 94 Copynumber: 1.9 Consensus size: 93
359660 TGAAATTGAA
* * * *
359670 TCTGAAACTGGTAAATTGTTTGTTGACACCAGCCACCCCTTCGTTGTGAAGTTGAGCTTGTGTTG
1 TCTGAAACTGGGAAATGGTTTGTTGACACCAGCCACCCATTCGTTGTGAAGTTGAACTTGTGTTG
*
359735 TC-CTGAGTCCAATATCCTTCGCTTTGGC
66 TCTC-GAGTCCAATATCATTCGCTTTGGC
**
359763 TCTGAAACTGGGAAATGGTTTGTTGACAACCAGCCGTCCATTCGTTGTGAAGTTGAACTTGTGTT
1 TCTGAAACTGGGAAATGGTTTGTTGAC-ACCAGCCACCCATTCGTTGTGAAGTTGAACTTGTGTT
359828 GTCTCGAGTCCAATATCATTCGCT
65 GTCTCGAGTCCAATATCATTCGCT
359852 GTGAAGTTGA
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
93 25 0.31
94 54 0.68
95 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (93 bp):
TCTGAAACTGGGAAATGGTTTGTTGACACCAGCCACCCATTCGTTGTGAAGTTGAACTTGTGTTG
TCTCGAGTCCAATATCATTCGCTTTGGC
Found at i:359990 original size:22 final size:22
Alignment explanation
Indices: 359965--360033 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
359955 ATCCTCTGTC
359965 GTGGAGTTGAAATCACGGATGT
1 GTGGAGTTGAAATCACGGATGT
* * * *
359987 GTGGATTTGATATCCTCCG-T-T
1 GTGGAGTTGAAAT-CACGGATGT
**
360008 GTGGAGTTGAAATCGTGGATGT
1 GTGGAGTTGAAATCACGGATGT
360030 GTGG
1 GTGG
360034 GTACGATATC
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
20 2 0.06
21 13 0.37
22 17 0.49
23 3 0.09
ACGTcount: A:0.20, C:0.10, G:0.36, T:0.33
Consensus pattern (22 bp):
GTGGAGTTGAAATCACGGATGT
Found at i:360065 original size:43 final size:43
Alignment explanation
Indices: 359950--360067 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
359940 CTCGAGTGGC
* *
359950 ACGATATCCTCTGTCGTGGAGTTGAAATCACGGATGTGTGGAT
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGCGGATGTGTGGAT
** * * *
359993 TTGATATCCTCCGTTGTGGAGTTGAAATCGTGGATGTGTGGGT
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGCGGATGTGTGGAT
***
360036 ACGATATCCTCCGTCACAGAGTTGAAATCGCG
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGCG
360068 AATGGCCCCT
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (43 bp):
ACGATATCCTCCGTCGTGGAGTTGAAATCGCGGATGTGTGGAT
Found at i:360464 original size:14 final size:14
Alignment explanation
Indices: 360445--360471 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
360435 CGATTGCATG
360445 TCTGGAATCTTGAC
1 TCTGGAATCTTGAC
360459 TCTGGAATCTTGA
1 TCTGGAATCTTGA
360472 AGTTCTGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (14 bp):
TCTGGAATCTTGAC
Found at i:371163 original size:13 final size:13
Alignment explanation
Indices: 371145--371177 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
371135 TACCAAATAT
371145 GTGTCGGATTCGG
1 GTGTCGGATTCGG
371158 GTGTCGGATTCGG
1 GTGTCGGATTCGG
*
371171 GAGTCGG
1 GTGTCGG
371178 TTACAATCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.15, G:0.48, T:0.27
Consensus pattern (13 bp):
GTGTCGGATTCGG
Found at i:374309 original size:29 final size:29
Alignment explanation
Indices: 374267--374323 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
374257 GAAAGGGAAT
**
374267 TTTCTAAAACACCAAAAGGGAGTGCCCAC
1 TTTCTAAAACACCAAAAGAAAGTGCCCAC
*
374296 TTTCTAAAGCACCAAAAGAAAGTGCCCA
1 TTTCTAAAACACCAAAAGAAAGTGCCCA
374324 AAGTAGTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.18
Consensus pattern (29 bp):
TTTCTAAAACACCAAAAGAAAGTGCCCAC
Found at i:375977 original size:71 final size:71
Alignment explanation
Indices: 375861--375998 Score: 204
Period size: 71 Copynumber: 1.9 Consensus size: 71
375851 GAAATTTCTC
* * *
375861 ATTATTGTAGAGTGTCATTATATATAAAGCTACTAGAGTTGAGCAACTTTATAAACTAGTGCAGC
1 ATTATTGCAGAGTCTCATTATATATAAAGCTACTAGAGTTGAGCAAATTTATAAACTAGTGCAGC
375926 CCAGAA
66 CCAGAA
* * * * *
375932 ATTATTGCAGATTCTCATTATTTATAAGGTTACTAGAGTTGAGCAAATTTATGAACTAGTGCAGC
1 ATTATTGCAGAGTCTCATTATATATAAAGCTACTAGAGTTGAGCAAATTTATAAACTAGTGCAGC
375997 CC
66 CC
375999 GTTACAATGC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 59 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33
Consensus pattern (71 bp):
ATTATTGCAGAGTCTCATTATATATAAAGCTACTAGAGTTGAGCAAATTTATAAACTAGTGCAGC
CCAGAA
Found at i:386076 original size:30 final size:30
Alignment explanation
Indices: 386040--386100 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
386030 TCCAGAAGAA
386040 TAAACCAATTCCATCAACATATAATCACCT
1 TAAACCAATTCCATCAACATATAATCACCT
386070 TAAACCAATTCCATCAACATATAATCACCT
1 TAAACCAATTCCATCAACATATAATCACCT
386100 T
1 T
386101 CTCCAACTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.28
Consensus pattern (30 bp):
TAAACCAATTCCATCAACATATAATCACCT
Found at i:387626 original size:15 final size:15
Alignment explanation
Indices: 387606--387635 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
387596 CATATACCAG
*
387606 AAAAAAGGCTGAATA
1 AAAAAAGACTGAATA
387621 AAAAAAGACTGAATA
1 AAAAAAGACTGAATA
387636 TCAACAACCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13
Consensus pattern (15 bp):
AAAAAAGACTGAATA
Found at i:394813 original size:42 final size:42
Alignment explanation
Indices: 394754--394838 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
394744 TCAATTTTAT
394754 TAACAAAAATGATGAGTTTGTAATAAATGAATAATTAGGTTA
1 TAACAAAAATGATGAGTTTGTAATAAATGAATAATTAGGTTA
394796 TAACAAAAATGATGAGTTTGTAATAAATGAATAATTAGGTTA
1 TAACAAAAATGATGAGTTTGTAATAAATGAATAATTAGGTTA
394838 T
1 T
394839 CATTTTGTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.34
Consensus pattern (42 bp):
TAACAAAAATGATGAGTTTGTAATAAATGAATAATTAGGTTA
Found at i:396906 original size:31 final size:31
Alignment explanation
Indices: 396864--396923 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
396854 AACTTAAAAG
* *
396864 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
396895 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
396924 CATACAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:397468 original size:14 final size:14
Alignment explanation
Indices: 397449--397533 Score: 71
Period size: 14 Copynumber: 6.6 Consensus size: 14
397439 TATCTATAAT
397449 ATATTTAAAAATTA
1 ATATTTAAAAATTA
397463 ATATTT---AATT-
1 ATATTTAAAAATTA
397473 -TATTTAAAAAATTA
1 ATATTT-AAAAATTA
397487 AT-TTT-AAAATTA
1 ATATTTAAAAATTA
* *
397499 ATATCT-ATAATATA
1 ATATTTAAAAAT-TA
397513 ATA-TTAAAAATTA
1 ATATTTAAAAATTA
397526 ATATTTAA
1 ATATTTAA
397534 TTTATTAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
9 5 0.09
11 4 0.07
12 9 0.16
13 16 0.28
14 22 0.39
15 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (14 bp):
ATATTTAAAAATTA
Found at i:397476 original size:23 final size:24
Alignment explanation
Indices: 397430--397493 Score: 78
Period size: 23 Copynumber: 2.6 Consensus size: 24
397420 TATATATGAT
397430 AAAATTAAATATCTATAATATATTT-A
1 AAAATT-AATAT-T-TAATATATTTAA
*
397456 AAAATTAATATTTAATTTATTTAA
1 AAAATTAATATTTAATATATTTAA
397480 AAAATTAAT-TTTAA
1 AAAATTAATATTTAA
397494 AATTAATATC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
23 14 0.39
24 11 0.31
25 5 0.14
26 6 0.17
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AAAATTAATATTTAATATATTTAA
Found at i:397496 original size:62 final size:63
Alignment explanation
Indices: 397429--397587 Score: 240
Period size: 62 Copynumber: 2.6 Consensus size: 63
397419 ATATATATGA
*
397429 TAAAATTAAATATCTATAATAT-AT-TTAAAAATTAATATTTAATTTATTTAAAAAATTAATTT
1 TAAAATTAAATATCTATAATATAATATTAAAAATTAATATTTAATTTA-TTAAAAAATTAATAT
397491 TAAAATT-AATATCTATAATATAATATTAAAAATTAATATTTAATTTATTAAAAAATTAATAT
1 TAAAATTAAATATCTATAATATAATATTAAAAATTAATATTTAATTTATTAAAAAATTAATAT
*
397553 TAAAATTAAA-ATC-A-AATATAATATATATAAATTAA
1 TAAAATTAAATATCTATAATATAATAT-TAAAAATTAA
397588 ATATAAACCT
Statistics
Matches: 91, Mismatches: 2, Indels: 9
0.89 0.02 0.09
Matches are distributed among these distances:
60 10 0.11
61 24 0.26
62 33 0.36
63 24 0.26
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (63 bp):
TAAAATTAAATATCTATAATATAATATTAAAAATTAATATTTAATTTATTAAAAAATTAATAT
Found at i:397497 original size:12 final size:13
Alignment explanation
Indices: 397449--397561 Score: 75
Period size: 12 Copynumber: 9.1 Consensus size: 13
397439 TATCTATAAT
397449 ATATTTAAAAATTA
1 ATATTT-AAAATTA
397463 ATATTT--AATT-
1 ATATTTAAAATTA
397473 -TATTTAAAAAATTA
1 ATATTT--AAAATTA
397487 AT-TTTAAAATTA
1 ATATTTAAAATTA
* *
397499 ATATCTATAATATA
1 ATATTTAAAAT-TA
*
397513 ATATTAAAAATTA
1 ATATTTAAAATTA
397526 ATATTT--AATT-
1 ATATTTAAAATTA
*
397536 -TATTAAAAAATTA
1 ATATT-TAAAATTA
397549 ATA-TTAAAATTA
1 ATATTTAAAATTA
397561 A
1 A
397562 AATCAAATAT
Statistics
Matches: 78, Mismatches: 8, Indels: 28
0.68 0.07 0.25
Matches are distributed among these distances:
9 9 0.12
11 8 0.10
12 21 0.27
13 18 0.23
14 21 0.27
15 1 0.01
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATTTAAAATTA
Found at i:398027 original size:24 final size:24
Alignment explanation
Indices: 398000--398059 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
397990 TTCATGAACG
*
398000 TTCGGTTATGTTCGTTTATATTCA
1 TTCGATTATGTTCGTTTATATTCA
*
398024 TTCGATTATGTTCGTTTATGTTCA
1 TTCGATTATGTTCGTTTATATTCA
398048 TTC-ATTTATGTT
1 TTCGA-TTATGTT
398060 TAACCCAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 1 0.03
24 32 0.97
ACGTcount: A:0.17, C:0.12, G:0.15, T:0.57
Consensus pattern (24 bp):
TTCGATTATGTTCGTTTATATTCA
Found at i:398928 original size:12 final size:11
Alignment explanation
Indices: 398902--398978 Score: 86
Period size: 12 Copynumber: 6.7 Consensus size: 11
398892 TGGGGCAGTG
*
398902 TCGAGCTTAAA
1 TCGAGCTCAAA
398913 TCGAGCTCAGAA
1 TCGAGCTCA-AA
398925 TCGAGCTCAGAA
1 TCGAGCTCA-AA
398937 TCGAGCTTC-AA
1 TCGAGC-TCAAA
398948 TCGAGCTCAGAA
1 TCGAGCTCA-AA
398960 TCGAGCTTC-AA
1 TCGAGC-TCAAA
398971 TCGAGCTC
1 TCGAGCTC
398979 GAGTCTTGAG
Statistics
Matches: 60, Mismatches: 1, Indels: 11
0.83 0.01 0.15
Matches are distributed among these distances:
10 4 0.07
11 24 0.40
12 28 0.47
13 4 0.07
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (11 bp):
TCGAGCTCAAA
Found at i:398949 original size:23 final size:23
Alignment explanation
Indices: 398902--398978 Score: 113
Period size: 23 Copynumber: 3.3 Consensus size: 23
398892 TGGGGCAGTG
*
398902 TCGAGCTTA-AATCGAGC-TCAGAA
1 TCGAGCTCAGAATCGAGCTTC--AA
398925 TCGAGCTCAGAATCGAGCTTCAA
1 TCGAGCTCAGAATCGAGCTTCAA
398948 TCGAGCTCAGAATCGAGCTTCAA
1 TCGAGCTCAGAATCGAGCTTCAA
398971 TCGAGCTC
1 TCGAGCTC
398979 GAGTCTTGAG
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
23 41 0.80
24 8 0.16
25 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (23 bp):
TCGAGCTCAGAATCGAGCTTCAA
Found at i:399235 original size:16 final size:16
Alignment explanation
Indices: 399210--399268 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
399200 CCAATGTTTA
399210 TGTTCGTTTATCTTCG
1 TGTTCGTTTATCTTCG
* *
399226 TGTTCATTTATGTTCG
1 TGTTCGTTTATCTTCG
* * *
399242 TGTTCGTTTATGTACA
1 TGTTCGTTTATCTTCG
399258 TGTTCGTTTAT
1 TGTTCGTTTAT
399269 TTATTAAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.12, C:0.14, G:0.19, T:0.56
Consensus pattern (16 bp):
TGTTCGTTTATCTTCG
Found at i:399354 original size:16 final size:16
Alignment explanation
Indices: 399333--399363 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
399323 AAAAAAAATT
399333 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
399349 TGTTCGTTTATGTTC
1 TGTTCGTTTATGTTC
399364 TTTTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.13, G:0.23, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:399812 original size:2 final size:2
Alignment explanation
Indices: 399805--399833 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
399795 GGTAACTACC
399805 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
399834 GCTCACTCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:400786 original size:87 final size:88
Alignment explanation
Indices: 400587--400787 Score: 232
Period size: 93 Copynumber: 2.3 Consensus size: 88
400577 TGAGGTTGGA
* ** *
400587 AATGCTGTGATATCTCAACTTCCCATTAGTATTGATGATTGATCATCTTCGGCTTCGATAACAAG
1 AATGCTGCGATATCTCAACTTCTAATTAGAATTGATGATTGATCATCTTCGGCTTCGATAACAAG
* *
400652 TTCCGATTTTGATTTTGATTCCGGGG
66 TTCCGATTCTGA---TGATTCCGAGG
* *
400678 AATGCT-CTGATATCTCAACTTCTAATGTGAGAATTGATGATTGATCATCTTCGGCTTGGCTAA-
1 AATGCTGC-GATATCTCAACTTCTAAT-T-AGAATTGATGATTGATCATCTTCGGCTTCGATAAC
400741 AATGTTCCGATTCT-A-G-TTCCGAGG
63 AA-GTTCCGATTCTGATGATTCCGAGG
400765 AATGCTGCGATATCTCAACTTCT
1 AATGCTGCGATATCTCAACTTCT
400788 GTTGGACCTC
Statistics
Matches: 97, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
87 28 0.29
88 2 0.02
91 22 0.23
92 4 0.04
93 41 0.42
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (88 bp):
AATGCTGCGATATCTCAACTTCTAATTAGAATTGATGATTGATCATCTTCGGCTTCGATAACAAG
TTCCGATTCTGATGATTCCGAGG
Found at i:402824 original size:26 final size:26
Alignment explanation
Indices: 402795--402845 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
402785 AAATCCGAAC
402795 AAAGCTTATAAAATTATAAAGTTTTA
1 AAAGCTTATAAAATTATAAAGTTTTA
402821 AAAGCTTATAAAATTATAAAGTTTT
1 AAAGCTTATAAAATTATAAAGTTTT
402846 CATCTTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.39
Consensus pattern (26 bp):
AAAGCTTATAAAATTATAAAGTTTTA
Found at i:405218 original size:18 final size:18
Alignment explanation
Indices: 405195--405229 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
405185 GTTCTTAAGG
*
405195 AGTGGTATTTCGGGACAT
1 AGTGGTACTTCGGGACAT
*
405213 AGTGGTCCTTCGGGACA
1 AGTGGTACTTCGGGACA
405230 AATATTCAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (18 bp):
AGTGGTACTTCGGGACAT
Found at i:413621 original size:2 final size:2
Alignment explanation
Indices: 413616--413707 Score: 184
Period size: 2 Copynumber: 46.0 Consensus size: 2
413606 TATACATAAC
413616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
413658 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
413700 AT AT AT AT
1 AT AT AT AT
413708 TCAATTAGTC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 90 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:416392 original size:3 final size:3
Alignment explanation
Indices: 416380--416464 Score: 136
Period size: 3 Copynumber: 28.7 Consensus size: 3
416370 AAGATACTAA
* *
416380 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
416427 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
416465 AATATATTAA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
2 2 0.03
3 73 0.97
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:418674 original size:33 final size:32
Alignment explanation
Indices: 418621--418686 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 32
418611 AATTTAAAAA
*
418621 TTCAAAAATATATTTAATTTATAATCATATTATT
1 TTCAAAAATATATTTAATTTAAAAT-AT-TTATT
*
418655 TTCAAAATTATATTT-ATTTAAAATATTTATT
1 TTCAAAAATATATTTAATTTAAAATATTTATT
418686 T
1 T
418687 ATTTAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 6 0.20
32 2 0.07
33 8 0.27
34 14 0.47
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (32 bp):
TTCAAAAATATATTTAATTTAAAATATTTATT
Found at i:418904 original size:20 final size:19
Alignment explanation
Indices: 418872--418913 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
418862 TATTATAAGT
*
418872 ATATTTATGAATATATAAA
1 ATATTTATCAATATATAAA
418891 ATATTTATACAATATATAAA
1 ATATTTAT-CAATATATAAA
418911 ATA
1 ATA
418914 AAAATATCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
ATATTTATCAATATATAAA
Found at i:420235 original size:3 final size:3
Alignment explanation
Indices: 420227--420301 Score: 123
Period size: 3 Copynumber: 25.0 Consensus size: 3
420217 TTAATATATT
*
420227 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
420275 TAA TGA TAA TGA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
420302 AAAAAAATAT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:420886 original size:226 final size:228
Alignment explanation
Indices: 420617--421029 Score: 740
Period size: 226 Copynumber: 1.8 Consensus size: 228
420607 AGAATTATGC
*
420617 AAAAAGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * *
420682 TATGAACTTTCTCTGGAAAAGCTGATCCATCAA-ATGATGGATTCAAGT-AAAGGTTGAACAAAT
66 TATGAACCTTCTCTGGAAAAGATAATCCATCAATATGATGAATTCAAGTAAAAGGTTGAACAAAT
420745 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
131 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
420810 AAAAGTTAATCCATCAATTTGATGAATTCAGGT
196 AAAAGTTAATCCATCAATTTGATGAATTCAGGT
*
420843 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
420908 TATGAACCTTCTCTGGAAAAGATAATCCATCAATTTGATGAATTCAGGTAAAAGGTTGAACAAAT
66 TATGAACCTTCTCTGGAAAAGATAATCCATCAATATGATGAATTCAAGTAAAAGGTTGAACAAAT
420973 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
131 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
421030 CTACCTGGCA
Statistics
Matches: 177, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
226 93 0.53
227 12 0.07
228 72 0.41
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (228 bp):
AAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACCTTCTCTGGAAAAGATAATCCATCAATATGATGAATTCAAGTAAAAGGTTGAACAAAT
TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
AAAAGTTAATCCATCAATTTGATGAATTCAGGT
Found at i:421048 original size:114 final size:114
Alignment explanation
Indices: 420617--421029 Score: 731
Period size: 114 Copynumber: 3.6 Consensus size: 114
420607 AGAATTATGC
* *
420617 AAAAAGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * *
420682 TATGAACTTTCTCTGGAAAAGCTGATCCATCAA-ATGATGGATTCAAGT
66 TATGAACTTTCTCTGGAAAAGTTAATCCATCAATTTGATGAATTCAGGT
420730 -AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
420794 TATGAACTTTCTCTGGAAAAGTTAATCCATCAATTTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGTTAATCCATCAATTTGATGAATTCAGGT
420843 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
420908 TATGAACCTTCTCTGGAAAAGATAATCCATCAATTTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGTTAATCCATCAATTTGATGAATTCAGGT
420957 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
421022 TATGAACT
66 TATGAACT
421030 CTACCTGGCA
Statistics
Matches: 288, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
112 93 0.32
113 12 0.04
114 183 0.64
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (114 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGTTAATCCATCAATTTGATGAATTCAGGT
Found at i:421858 original size:83 final size:83
Alignment explanation
Indices: 421714--422592 Score: 1437
Period size: 83 Copynumber: 10.6 Consensus size: 83
421704 CTTACCAAAA
* * *
421714 CAGATTAGATAACTCAAAGAACACTTTCAGAAGATGCTATTAGCAAATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
* *
421779 TGATTGATTCTATCCAAC
66 TGATTGGTTCTGTCCAAC
* * *
421797 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCTAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
*
421862 TGATT-ATTCTGTCCAAC
66 TGATTGGTTCTGTCCAAC
* *
421879 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
421944 TGATTGGTTCTGTCCAAC
66 TGATTGGTTCTGTCCAAC
421962 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
* *
422027 TGATTGGTTCT-ACTAAAC
66 TGATTGGTTCTGTC-CAAC
* *
422045 CAGGTCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
422110 TGATTGGTTCTGTCCAAC
66 TGATTGGTTCTGTCCAAC
*
422128 CAGATCAGATAACTCAAAGAACATTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
*
422193 TGATTGGTTCTG-CTAAAC
66 TGATTGGTTCTGTC-CAAC
*
422211 CAGGTCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
*
422276 TGATTGGTTCTG-CTAAAC
66 TGATTGGTTCTGTC-CAAC
* *
422294 CAGGTCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
422359 TGATTGGTTCTGTCCAAC
66 TGATTGGTTCTGTCCAAC
*
422377 CAGATCAGATAACTCAAAGAACATTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
*
422442 TGATT-GTTCTG-CTAAAC
66 TGATTGGTTCTGTC-CAAC
* *
422459 CAGGTCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATTCATCTTCTAAATTCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT-AGCACATTCATCTTCCAAATTCA
422524 ATGATTGGTTCTGTCCAAC
65 ATGATTGGTTCTGTCCAAC
422543 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT-AGCACATT
422593 ATATTTGTTC
Statistics
Matches: 753, Mismatches: 34, Indels: 17
0.94 0.04 0.02
Matches are distributed among these distances:
81 1 0.00
82 128 0.17
83 563 0.75
84 60 0.08
85 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.28
Consensus pattern (83 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTCCAAATTCAA
TGATTGGTTCTGTCCAAC
Found at i:423388 original size:19 final size:16
Alignment explanation
Indices: 423366--423411 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 16
423356 AATAGAAAAG
423366 AATAAATTGAATTTCCAAA
1 AATAAATTGAATTT-C--A
*
423385 AATAAATTGACTTTCA
1 AATAAATTGAATTTCA
423401 AATAAATTGAA
1 AATAAATTGAA
423412 CTTGAAATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 11 0.44
18 1 0.04
19 13 0.52
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.33
Consensus pattern (16 bp):
AATAAATTGAATTTCA
Found at i:423759 original size:15 final size:14
Alignment explanation
Indices: 423733--423796 Score: 74
Period size: 15 Copynumber: 4.4 Consensus size: 14
423723 TGAACCCCCC
*
423733 TTTTTCTTTTTCTT
1 TTTTTTTTTTTCTT
423747 TTTTTTTTCTTTCTT
1 TTTTTTTT-TTTCTT
*
423762 TTTTCTTTTTTCTAT
1 TTTTTTTTTTTCT-T
*
423777 TTTTTTATTTTCTT
1 TTTTTTTTTTTCTT
423791 TCTTTT
1 T-TTTT
423797 CTCTTAAGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
14 14 0.33
15 29 0.67
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTTTCTT
Found at i:423774 original size:29 final size:31
Alignment explanation
Indices: 423733--423801 Score: 90
Period size: 33 Copynumber: 2.3 Consensus size: 31
423723 TGAACCCCCC
423733 TTTTTC-TTTTTC-TTTTTT-TTTTCTTTCT
1 TTTTTCTTTTTTCTTTTTTTATTTTCTTTCT
423761 TTTTTCTTTTTTCTATTTTTTTATTTTCTTTCT
1 TTTTTCTTTTTTC--TTTTTTTATTTTCTTTCT
*
423794 TTTCTCTT
1 TTTTTCTT
423802 AAGCATAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
28 6 0.17
29 6 0.17
32 6 0.17
33 17 0.49
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (31 bp):
TTTTTCTTTTTTCTTTTTTTATTTTCTTTCT
Found at i:423801 original size:11 final size:11
Alignment explanation
Indices: 423735--423801 Score: 61
Period size: 11 Copynumber: 6.2 Consensus size: 11
423725 AACCCCCCTT
423735 TTTC-TTTTTC
1 TTTCTTTTTTC
*
423745 TTTTTTTTTTC
1 TTTCTTTTTTC
423756 TTTCTTTTTTC
1 TTTCTTTTTTC
423767 TTT-TTTCTATT-
1 TTTCTTT-T-TTC
423778 TTT-TTATTTTC
1 TTTCTT-TTTTC
*
423789 TTTCTTTTCTC
1 TTTCTTTTTTC
423800 TT
1 TT
423802 AAGCATAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
10 8 0.17
11 35 0.73
12 5 0.10
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:429793 original size:20 final size:22
Alignment explanation
Indices: 429754--429795 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
429744 GATATTTTTA
*
429754 TTTTATTATATTGTATAAATAT
1 TTTTATTATATTGCATAAATAT
429776 TTTTA-TATATT-CATAAATAT
1 TTTTATTATATTGCATAAATAT
429796 ACTTATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 6 0.32
22 5 0.26
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTTATTATATTGCATAAATAT
Found at i:429993 original size:15 final size:16
Alignment explanation
Indices: 429973--430014 Score: 68
Period size: 15 Copynumber: 2.6 Consensus size: 16
429963 TTTCTGATAT
429973 TTTTAAATAAATA-AA
1 TTTTAAATAAATATAA
429988 TTTTAAATAAATATAA
1 TTTTAAATAAATATAA
430004 TTTTGAAATAA
1 TTTT-AAATAA
430015 TAGGATTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 13 0.52
16 6 0.24
17 6 0.24
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
TTTTAAATAAATATAA
Found at i:430007 original size:32 final size:32
Alignment explanation
Indices: 429969--430042 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 32
429959 TTCTTTTCTG
* *
429969 ATATTTTTAAATAAATA-AATTTTAAA-TAAAT
1 ATATTTTGAAAT-AATAGAATTATAAATTAAAT
*
430000 ATAATTTTGAAATAATAGGATTATAAATTAAAT
1 AT-ATTTTGAAATAATAGAATTATAAATTAAAT
430033 ATATTTTGAA
1 ATATTTTGAA
430043 TTTTTAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
31 6 0.16
32 24 0.65
33 7 0.19
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (32 bp):
ATATTTTGAAATAATAGAATTATAAATTAAAT
Found at i:441129 original size:15 final size:14
Alignment explanation
Indices: 441109--441162 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 14
441099 ACTTGAAGAA
441109 AAAAAAAAGAAAAGG
1 AAAAAAAAGAAAA-G
*
441124 AAAAAATAGAAAATG
1 AAAAAAAAGAAAA-G
*
441139 AAAAAAAAGAGAAG
1 AAAAAAAAGAAAAG
441153 AAAAAGAAAG
1 AAAAA-AAAG
441163 GGGGTCAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 6 0.18
15 28 0.82
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.04
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:441136 original size:26 final size:26
Alignment explanation
Indices: 441104--441161 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
441094 ATTATACTTG
441104 AAGAAAAAAAAAAGAAAAG-GAA-AAA
1 AAGAAAAAAAAAA-AAAAGAGAAGAAA
**
441129 ATAGAAAATGAAAAAAAAGAGAAGAAA
1 A-AGAAAAAAAAAAAAAAGAGAAGAAA
441156 AAGAAA
1 AAGAAA
441162 GGGGGTCAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 6 0.21
26 18 0.64
27 4 0.14
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.03
Consensus pattern (26 bp):
AAGAAAAAAAAAAAAAAGAGAAGAAA
Found at i:442337 original size:83 final size:83
Alignment explanation
Indices: 442198--442916 Score: 1149
Period size: 83 Copynumber: 8.7 Consensus size: 83
442188 CATTAACTGA
* * * *
442198 AAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGACCTGGTT-TAGCAG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAG
442262 AACCAATCATTGAATTTGG
65 AACCAATCATTGAATTTGG
* * * *
442281 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTT-TAGCAG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAG
* *
442345 AACCAGTCATTGAATTGGG
65 AACCAATCATTGAATTTGG
* *
442364 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
*
442429 ACCAATCATTGAATTTAG
66 ACCAATCATTGAATTTGG
*
442447 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
*
442512 ATCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
* *
442530 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTT-TAGCAG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAG
*
442594 AACCAATCATTGAATTGGG
65 AACCAATCATTGAATTTGG
* *
442613 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
*
442678 ACCAATCATTGAATTTAG
66 ACCAATCATTGAATTTGG
* *
442696 AAGATGAATTTGCTAATAGCATCTTCTGAAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAAA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
*
442761 ATCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
*
442779 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTTAGTTATCTGATCTGGTTTGG-CAG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAG
442843 AACCAATCATTGAATTTGG
65 AACCAATCATTGAATTTGG
442862 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
442917 TTTTGGTAAG
Statistics
Matches: 596, Mismatches: 36, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
82 1 0.00
83 589 0.99
84 6 0.01
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (83 bp):
AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
ACCAATCATTGAATTTGG
Found at i:442636 original size:249 final size:249
Alignment explanation
Indices: 442198--442916 Score: 1269
Period size: 249 Copynumber: 2.9 Consensus size: 249
442188 CATTAACTGA
* * * *
442198 AAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGACCTGGTT-TAGCAG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAG
* * *
442262 AACCAATCATTGAATTTGGAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTA
65 AATCAATCATTGAATTTGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTA
*
442327 TCTGACCTGGTTTAGCAGAACCAGTCATTGAATTGGGAAGATGAATGTGCTCATAGCATCTTCTG
130 TCTGACCTGGTTTAGCAGAACCAATCATTGAATTGGGAAGATGAATGTGCTCATAGCATCTTCTG
442392 GAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
195 GAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
*
442447 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
442512 ATCAATCATTGAATTTGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
66 ATCAATCATTGAATTTGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
442577 CTGACCTGGTTTAGCAGAACCAATCATTGAATTGGGAAGATGAATGTGCTCATAGCATCTTCTGG
131 CTGACCTGGTTTAGCAGAACCAATCATTGAATTGGGAAGATGAATGTGCTCATAGCATCTTCTGG
442642 AAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
196 AAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
* *
442696 AAGATGAATTTGCTAATAGCATCTTCTGAAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAAA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
*
442761 ATCAATCATTGAATTTGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTTAGTTAT
66 ATCAATCATTGAATTTGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
* * * * *
442826 CTGATCTGGTTTGGCAGAACCAATCATTGAATTTGGAAGATGAATTTGCTAATAGCATCTTCTGG
131 CTGACCTGGTTTAGCAGAACCAATCATTGAATTGGGAAGATGAATGTGCTCATAGCATCTTCTGG
442891 AAGTGTTCTTTGAGTTATCTGATCTG
196 AAGTGTTCTTTGAGTTATCTGATCTG
442917 TTTTGGTAAG
Statistics
Matches: 451, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
249 450 1.00
250 1 0.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (249 bp):
AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGA
ATCAATCATTGAATTTGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
CTGACCTGGTTTAGCAGAACCAATCATTGAATTGGGAAGATGAATGTGCTCATAGCATCTTCTGG
AAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
Found at i:443782 original size:114 final size:114
Alignment explanation
Indices: 443599--444810 Score: 1787
Period size: 113 Copynumber: 10.7 Consensus size: 114
443589 ATTGCCAGGT
443599 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* * * * *
443664 TCAACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTCTCCAGAGA
66 TCAACCTTTTACTTGAATTCATC-ATTTGATGGATCAACTTTTCCAGAGA
443714 AG-GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * * *
443778 TCAACCTTTTACCCGAATCCATCATTTGATGGATCATTCTTTTCCAG-GT
66 TCAACCTTTTACTTGAATTCATCATTTGATGGATCA-ACTTTTCCAGAGA
*
443827 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * * * *
443892 TCAACCTTTTGTTTGAATTCATCATTTAATGGATCAACATTGCCAG-GT
66 TCAACCTTTTACTTGAATTCATCATTTGATGGATCAACTTTTCCAGAGA
* *
443940 AGAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * *
444005 TCAACCTTTTGTTTGAATTCATCACTTGATGGATTAACTTTTCCAGAGA
66 TCAACCTTTTACTTGAATTCATCATTTGATGGATCAACTTTTCCAGAGA
444054 A-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* * * *
444118 TCAACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCCAGAGA
66 TCAACCTTTTACTTGAATTCATC-ATTTGATGGATCAACTTTTCCAGAGA
444168 AG-GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * *
444232 TCAACCTTTTACCCGAATCCATCATTTGATGGATCATTCTTTTCCAGAG-
66 TCAACCTTTTACTTGAATTCATCATTTGATGGATCA-ACTTTTCCAGAGA
*
444281 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * * * *
444346 TCAACCTTTTGTTTGAATTCATCATTTAATGGATCAACATTGCCAG-GT
66 TCAACCTTTTACTTGAATTCATCATTTGATGGATCAACTTTTCCAGAGA
* *
444394 AGAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
** * *
444459 TCAACCTTTTGTTTGAATTCATCACTTGATGGATTAACTTTTCCAGAGA
66 TCAACCTTTTACTTGAATTCATCATTTGATGGATCAACTTTTCCAGAGA
*
444508 A-AGTTCATAATGAGAAGAACTCATCTGAAAAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* *
444572 TCAACCTTTTACTTGAATCCATCATTTGATGGATCAGCTTTTCCAGAGA
66 TCAACCTTTTACTTGAATTCATCATTTGATGGATCAACTTTTCCAGAGA
444621 A-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* * * * *
444685 TCAACCTTTTGCTTGAATTCATCATTTAATGGATCAACATTGCCAG-GT
66 TCAACCTTTTACTTGAATTCATCATTTGATGGATCAACTTTTCCAGAGA
* * *
444733 AGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGAAAGAAGAAGTTCATAATAAGAAGAACT
1 AGAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATT
*
444798 TGTTCAACTTTTT
63 TGTTCAACCTTTT
444811 GCATAATTCT
Statistics
Matches: 1012, Mismatches: 72, Indels: 25
0.91 0.06 0.02
Matches are distributed among these distances:
112 3 0.00
113 558 0.55
114 398 0.39
115 3 0.00
116 50 0.05
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (114 bp):
AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
TCAACCTTTTACTTGAATTCATCATTTGATGGATCAACTTTTCCAGAGA
Found at i:444429 original size:454 final size:454
Alignment explanation
Indices: 443601--444811 Score: 2176
Period size: 454 Copynumber: 2.7 Consensus size: 454
443591 TGCCAGGTAG
443601 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
*
443666 AACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTCTCCAGAGAAGGTTCATAATGAGAAG
66 AACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAG
443731 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCCGAAT
131 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCCGAAT
443796 CCATCATTTGATGGATCATTCTTTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAG
196 CCATCATTTGATGGATCATTCTTTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAG
443861 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTAATGGAT
261 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTAATGGAT
443926 CAACATTGCCAGGTAGAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAA
326 CAACATTGCCAGGTAGAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAA
443991 TGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTGATGGATTAACTTTTCCAGAGAA
391 TGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTGATGGATTAACTTTTCCAGAGAA
444055 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
444120 AACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAG
66 AACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAG
444185 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCCGAAT
131 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCCGAAT
444250 CCATCATTTGATGGATCATTCTTTTCCAGAG-AGAGTTCATAATGAGAAGAACTCATCTGAAGAA
196 CCATCATTTGATGGATCATTCTTTTCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAA
444314 GGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTAATGGA
260 GGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTAATGGA
444379 TCAACATTGCCAGGTAGAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATA
325 TCAACATTGCCAGGTAGAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATA
444444 ATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTGATGGATTAACTTTTCCAGAGAA
390 ATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTGATGGATTAACTTTTCCAGAGAA
*
444509 AGTTCATAATGAGAAGAACTCATCTGAAAAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
* * * * * *
444574 AACCTTTTACTTGAATCCATC-ATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAG
66 AACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAG
* **
444638 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGAAT
131 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCCGAAT
* * * * *
444703 TCATCATTTAATGGATCA-ACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAG
196 CCATCATTTGATGGATCATTCTTTTCCAGGTAGAGTTCATAATGAGAAGAA--C-TCATCTGAAG
* * * * *
444767 AAGAAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTTG
258 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTG
444812 CATAATTCTA
Statistics
Matches: 731, Mismatches: 21, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
451 1 0.00
452 27 0.04
453 117 0.16
454 535 0.73
455 51 0.07
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (454 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
AACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAG
AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCCGAAT
CCATCATTTGATGGATCATTCTTTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAG
GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTAATGGAT
CAACATTGCCAGGTAGAGTTTATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAA
TGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCACTTGATGGATTAACTTTTCCAGAGAA
Done.