genome.fa.s9080.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009080.1 Hibiscus syriacus cultivar Beakdansim tig00112520_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74091

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3071--3111	2	20.5	2	100	0	82	48	0	0	51	1.00
3746--3786	14	2.9	14	92	0	64	36	17	9	36	1.82
3891--4002	35	3.2	34	81	5	125	21	23	19	35	1.96
5660--5700	14	2.9	14	92	0	64	36	14	12	36	1.84
7993--8223	40	5.8	40	74	13	167	42	23	15	18	1.88
8018--8223	20	10.3	19	80	9	173	42	23	16	17	1.89
7993--8223	60	3.8	59	75	12	211	42	23	15	18	1.88
8038--8223	100	1.9	100	93	0	318	41	23	16	18	1.89
8793--8836	14	3.1	14	86	0	61	45	27	18	9	1.79
10359--10384	2	13.0	2	100	0	52	50	0	0	50	1.00
10556--10618	15	4.2	15	97	0	117	14	23	33	28	1.94
17263--17298	12	3.0	12	87	0	54	30	8	25	36	1.85
17443--17485	15	2.9	15	100	0	86	13	25	32	27	1.94
24888--25103	105	2.1	104	83	0	261	23	14	21	40	1.90
25120--25169	24	2.1	24	96	0	91	24	26	28	22	1.99
25120--25182	24	2.6	24	89	0	81	25	25	25	23	2.00
25975--26034	19	3.4	19	65	25	58	28	6	31	33	1.83
25975--26042	34	2.0	34	97	0	127	26	7	29	36	1.83
32476--32765	145	2.0	145	100	0	580	34	19	21	24	1.96
33116--33161	21	2.2	21	88	0	65	39	19	10	30	1.86
33081--33727	90	7.3	88	75	7	502	28	19	18	33	1.96
33262--33582	87	3.7	86	74	5	286	27	19	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33209--33674	177	2.6	176	85	2	578	28	20	19	31	1.97
33565--33605	21	2.0	21	85	0	55	39	21	9	29	1.86
35456--35506	24	2.1	24	82	7	59	31	7	3	56	1.46
37914--37951	15	2.5	15	91	0	58	28	5	50	15	1.66
43869--43958	30	3.0	30	79	4	101	36	5	2	55	1.36
48314--48571	105	2.5	103	85	5	326	30	25	13	30	1.94
48291--48749	55	8.6	55	80	8	421	30	23	14	31	1.94
48340--48749	156	2.6	159	83	7	458	29	24	14	32	1.94

Tables:   1

The End!