Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009082.1 Hibiscus syriacus cultivar Beakdansim tig00112524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119442

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152--211
16
3.8
16
77
0
66
41
16
23
18
1.90
3908--3954
24
1.9
25
86
4
69
29
21
10
38
1.87
4705--4746
2
21.0
2
100
0
84
50
0
0
50
1.00
14533--14586
16
3.4
16
92
0
72
66
0
1
31
1.02
14536--14586
9
6.1
9
73
17
56
64
0
1
33
1.05
14536--14600
25
2.7
24
81
11
71
66
1
1
30
1.10
14557--14593
16
2.3
16
90
0
56
67
2
0
29
1.04
14954--15032
29
2.7
29
84
0
95
43
11
12
32
1.79
38893--38942
21
2.4
21
100
0
100
44
14
10
32
1.78
39233--39333
50
2.0
51
92
1
168
37
19
4
37
1.74
43765--43808
23
2.0
23
81
4
54
50
11
2
36
1.51
51719--51757
17
2.2
18
86
4
53
25
0
23
51
1.49
54312--54424
34
3.3
34
74
15
115
41
2
7
48
1.44
55293--55322
2
15.0
2
100
0
60
50
0
0
50
1.00
56331--56369
19
2.1
19
85
0
51
43
15
0
41
1.46
57093--57138
23
2.1
22
84
8
58
47
2
0
50
1.13
65000--65632
331
1.9
331
94
0
1124
28
26
15
29
1.96
70828--70894
31
2.3
26
71
23
71
28
26
22
22
1.99
72033--72106
9
8.7
9
69
21
52
40
0
0
59
0.97
72009--72098
34
2.6
34
100
0
180
38
0
0
61
0.96
72009--72118
25
4.7
25
76
15
110
40
0
0
59
0.98
79619--79954
134
2.5
134
85
3
446
25
17
27
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79991--80123
65
2.1
64
85
4
178
39
12
18
29
1.87
84586--85955
685
2.0
684
90
0
2139
33
8
18
39
1.82
87356--87401
20
2.3
20
88
3
67
36
26
0
36
1.57
95029--95059
10
3.1
10
100
0
62
80
0
9
9
0.90

Tables:   1

The End!