Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009087.1 Hibiscus syriacus cultivar Beakdansim tig00112531_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96376

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3279--3351
34
2.1
34
100
0
146
53
8
2
35
1.45
5411--5442
15
2.0
17
88
11
50
37
6
0
56
1.25
15339--15435
48
2.0
48
100
0
194
31
26
22
18
1.97
22998--23054
28
2.0
28
100
0
114
45
29
7
17
1.75
29275--29349
21
3.3
22
76
20
73
60
6
9
24
1.52
29641--29762
62
2.0
60
91
3
199
42
24
7
25
1.80
35678--35720
23
1.9
22
81
13
52
18
11
2
67
1.32
38514--38583
29
2.4
30
85
9
99
30
4
2
62
1.28
38687--38716
2
15.0
2
100
0
60
50
0
0
50
1.00
47466--47494
14
2.0
15
93
6
51
44
0
0
55
0.99
51159--51347
97
2.0
96
85
7
258
28
14
15
41
1.87
55353--55379
14
1.9
14
100
0
54
14
40
7
37
1.74
61639--61704
20
3.3
20
79
8
80
45
25
12
16
1.82
65203--65258
24
2.3
24
87
6
78
30
7
14
48
1.70
65222--65258
18
2.1
18
89
0
56
29
8
10
51
1.65
65214--65266
24
2.2
24
89
0
79
33
5
13
47
1.66
66423--66476
19
2.7
20
81
16
67
50
22
12
14
1.77
66849--66899
22
2.3
22
96
0
93
29
15
35
19
1.93
67016--67329
40
7.8
40
78
6
287
19
15
23
42
1.89
67014--67295
20
14.0
20
76
9
243
18
15
23
42
1.89
67014--67292
60
4.6
59
79
4
270
18
15
23
41
1.89
67324--67366
21
2.0
21
86
0
59
41
13
20
23
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67374--67427
20
2.7
19
69
8
54
24
14
31
29
1.95
67772--67804
16
2.1
16
94
0
57
33
21
12
33
1.90
67955--67985
2
16.0
2
93
6
55
48
0
0
51
1.00
69107--69149
2
21.5
2
100
0
86
51
0
0
48
1.00
70777--70801
2
12.5
2
100
0
50
48
0
0
52
1.00
72531--72560
15
2.0
15
93
0
51
13
23
46
16
1.82
77932--78007
38
2.0
38
94
0
134
44
13
13
28
1.81
77944--78008
22
3.2
22
69
24
70
46
10
13
29
1.77
79432--79754
39
8.9
37
77
14
268
46
4
5
43
1.45
79692--79803
27
3.8
27
76
18
98
42
6
6
44
1.54
79724--79817
28
3.4
27
85
8
118
47
4
4
43
1.42
79727--79843
27
4.0
28
75
15
85
47
4
4
43
1.42
79690--79863
32
5.5
33
76
15
104
45
4
6
43
1.50
79833--79873
21
2.0
21
90
9
66
41
0
9
48
1.36
81112--81210
4
25.8
4
71
15
57
20
7
1
71
1.15
83465--83506
11
3.8
11
93
0
75
61
19
2
16
1.44
85452--85499
11
4.5
11
79
10
64
60
16
2
20
1.46
85452--85499
10
4.6
10
82
7
60
60
16
2
20
1.46
86515--86548
15
2.1
17
89
10
54
67
2
2
26
1.19
94193--94346
60
2.6
59
83
4
182
40
3
21
34
1.72

Tables:   1

The End!