genome.fa.s9089.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009089.1 Hibiscus syriacus cultivar Beakdansim tig00112535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147874

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496--553	24	2.7	20	77	15	62	25	24	18	31	1.98
3755--3978	64	3.5	62	81	6	234	33	20	19	26	1.96
4634--4789	31	5.0	31	93	1	260	19	19	23	38	1.93
7958--8178	64	3.5	64	79	6	195	33	19	19	27	1.96
8833--8988	31	5.0	31	84	4	199	21	16	21	41	1.91
11039--11193	20	8.1	20	76	10	128	28	28	18	24	1.98
11039--11132	38	2.5	38	84	3	127	26	29	20	23	1.99
11040--11193	58	2.7	58	88	2	213	28	28	18	24	1.98
13099--13753	327	2.0	327	100	0	1310	23	19	18	38	1.93
28141--28201	2	31.5	2	86	6	90	50	0	1	47	1.10
28547--28829	2	139.5	2	72	16	210	48	2	6	42	1.41
29134--29182	19	2.5	19	90	6	71	44	18	0	36	1.50
38468--38576	36	3.0	36	95	0	191	33	16	11	37	1.85
41445--41505	32	1.9	31	86	3	86	31	6	18	44	1.75
43880--43947	2	34.0	2	100	0	136	50	0	0	50	1.00
49589--49630	21	2.0	20	86	4	57	38	14	7	40	1.73
49802--49843	21	2.0	20	86	4	57	38	14	7	40	1.73
49536--49961	213	2.0	213	99	0	834	31	20	9	38	1.85
59592--59644	23	2.2	24	81	15	58	32	15	11	41	1.82
64347--64383	2	18.5	2	100	0	74	48	0	0	51	1.00
64995--65125	60	2.2	60	74	9	131	33	12	19	34	1.90
66400--66533	66	2.0	65	91	1	214	36	16	27	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67451--67531	26	3.2	26	62	19	62	55	4	11	28	1.55
67450--67545	50	1.9	50	95	0	174	56	5	11	27	1.56
68315--68356	15	2.9	14	89	7	57	0	21	2	76	0.90
68315--68356	20	2.1	20	86	8	59	0	21	2	76	0.90
68862--68921	3	20.0	3	96	0	111	68	0	0	31	0.90
69181--69946	113	6.8	113	91	2	1078	29	19	14	37	1.91
70744--71088	83	4.2	83	96	0	627	37	22	13	26	1.92
72238--72309	7	10.3	7	83	7	60	0	16	0	83	0.65
72242--72301	31	1.9	32	89	3	95	0	18	0	81	0.69
72237--72309	17	4.0	17	78	16	83	0	16	0	83	0.64
82979--83045	23	2.9	23	80	6	73	59	1	1	37	1.16
84443--84473	13	2.4	13	94	0	53	9	64	25	0	1.24
85189--85281	3	31.0	3	93	0	159	65	0	2	32	1.04
89875--90036	60	2.7	61	83	5	188	33	17	5	42	1.73
90165--90338	60	2.9	59	83	5	215	43	6	20	30	1.76
102242--102281	15	2.6	15	84	4	53	70	10	2	17	1.27
105724--105749	6	4.3	6	100	0	52	15	15	0	69	1.20
110615--110773	32	5.0	32	77	0	165	28	23	27	20	1.99
110615--110816	96	2.1	96	96	0	368	27	23	27	20	1.99
110615--110816	32	6.3	32	75	0	143	27	23	27	20	1.99
111911--111977	27	2.4	28	90	5	109	20	10	25	43	1.84
115266--115308	16	2.7	16	82	10	52	53	0	4	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115719--115756	11	3.5	11	82	7	51	18	2	18	60	1.48
116164--116503	43	7.9	43	85	3	389	32	19	23	24	1.97
119860--120037	86	2.1	84	85	2	230	35	19	18	26	1.94
119857--120220	41	8.8	41	74	10	240	34	19	18	28	1.95
119962--120220	81	3.2	80	81	4	254	33	19	18	28	1.95
121194--121252	2	29.5	2	100	0	118	50	0	0	49	1.00
129065--129100	16	2.2	17	95	5	65	27	8	27	36	1.86
138962--139037	24	3.2	23	75	23	77	77	0	13	9	0.99
138994--139037	17	2.6	16	89	10	70	79	0	13	6	0.92
140018--140632	55	11.3	55	89	2	893	30	14	26	28	1.95
140018--140640	164	3.8	165	90	2	913	30	14	26	28	1.95
140018--140632	109	5.6	110	88	2	902	30	14	26	28	1.95
140626--140758	55	2.5	55	87	6	184	30	21	23	25	1.99
140644--140778	54	2.5	53	86	9	193	32	20	25	22	1.97
141016--141081	2	33.5	2	96	3	125	51	0	0	48	1.00

Tables:   1

The End!