Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009090.1 Hibiscus syriacus cultivar Beakdansim tig00112536_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 415979
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:245553 original size:15 final size:15
Alignment explanation
Indices: 245535--245597 Score: 108
Period size: 15 Copynumber: 4.2 Consensus size: 15
245525 GAGGGTATAA
245535 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
245550 TAGTCCTTCGGGACG
1 TAGTCCTTCGGGACG
*
245565 TAGTCTTTCGGGACG
1 TAGTCCTTCGGGACG
*
245580 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGACG
245595 TAG
1 TAG
245598 GAGTCCTACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.14, C:0.22, G:0.33, T:0.30
Consensus pattern (15 bp):
TAGTCCTTCGGGACG
Found at i:246790 original size:30 final size:31
Alignment explanation
Indices: 246708--246794 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 31
246698 AGAGTAGAGG
*
246708 GTTACCTATGTCTTTC-GAGACATATGGACAA
1 GTTACCTATGTCATTCGGA-ACATATGGACAA
* *
246739 TTTACC--TGTCATTCGGGACATATGGAC-A
1 GTTACCTATGTCATTCGGAACATATGGACAA
246767 GTTACCTATGTTC-TTCGGAACATATGGA
1 GTTACCTATG-TCATTCGGAACATATGGA
246795 TAGGTCATTC
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
28 6 0.13
29 17 0.36
30 17 0.36
31 7 0.15
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (31 bp):
GTTACCTATGTCATTCGGAACATATGGACAA
Found at i:249880 original size:11 final size:13
Alignment explanation
Indices: 249864--249910 Score: 50
Period size: 11 Copynumber: 4.0 Consensus size: 13
249854 TATTAAAATT
249864 TTAAAATG-AA-A
1 TTAAAATGTAATA
249875 TTAAAATGTAATA
1 TTAAAATGTAATA
*
249888 TTAAAA-ATAAT-
1 TTAAAATGTAATA
249899 TTAAAA-GTAATA
1 TTAAAATGTAATA
249911 ATAGTTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 18 0.58
12 6 0.19
13 7 0.23
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (13 bp):
TTAAAATGTAATA
Found at i:250074 original size:16 final size:16
Alignment explanation
Indices: 250053--250091 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
250043 AGACCTGTTG
*
250053 CCGCCAGAATGCACCA
1 CCGCCAGAATCCACCA
*
250069 CCGCCAAAATCCACCA
1 CCGCCAGAATCCACCA
*
250085 CCACCAG
1 CCGCCAG
250092 TACCACCGCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.49, G:0.13, T:0.05
Consensus pattern (16 bp):
CCGCCAGAATCCACCA
Found at i:251266 original size:2 final size:2
Alignment explanation
Indices: 251259--251284 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
251249 AATTCTTCTT
251259 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
251285 AATTGCTACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:260272 original size:6 final size:6
Alignment explanation
Indices: 260261--260300 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
260251 ACTCAAGAGA
* * *
260261 TCTCTT TCTCTT TCTCTT TCTCTT TCCCGT TCTCTA TCTC
1 TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT TCTC
260301 GCTCTCTATC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.03, C:0.38, G:0.03, T:0.57
Consensus pattern (6 bp):
TCTCTT
Found at i:260293 original size:24 final size:24
Alignment explanation
Indices: 260266--260335 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
260256 AGAGATCTCT
** *
260266 TTCTCTTTCTCTTTCTCTTTCCCG
1 TTCTCTTTCTCGCTCTCTATCCCG
*
260290 TTCTCTATCTCGCTCTCTATCCCG
1 TTCTCTTTCTCGCTCTCTATCCCG
* * *
260314 TTCCCTTTCTCGATCTCGATCC
1 TTCTCTTTCTCGCTCTCTATCC
260336 TTCTTTCGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.06, C:0.40, G:0.07, T:0.47
Consensus pattern (24 bp):
TTCTCTTTCTCGCTCTCTATCCCG
Found at i:266883 original size:116 final size:116
Alignment explanation
Indices: 266665--267082 Score: 635
Period size: 116 Copynumber: 3.6 Consensus size: 116
266655 TGGACCAAAC
* * * * *
266665 ATTTTCAATTGAAGGGTTCATAATGAGAAGAACTCGTCTGGTGAGGGAGAAAAAGTTCCTAATG-
1 ATTTCCAATGGAAGGGTTCATAATGAAAAGAACTCGTCTGATGAGGGAGAAGAAGTTCCTAATGA
*
266729 GAAATAACTTGTTCAACCCTCACTCGTCCATCACAGAAGGAGATGGATATAT
66 G-AAGAACTTGTTCAACCCTCACTCGTCCATCACAGAAGGAGATGGATATAT
*
266781 ATTTCCAATGGAAGGGTTCATAATGAAAAGAACTCGTCTGATGAGGGAGAAGAAGTTTCTAATGA
1 ATTTCCAATGGAAGGGTTCATAATGAAAAGAACTCGTCTGATGAGGGAGAAGAAGTTCCTAATGA
* *
266846 GAAGAACTTGTTCAACCCTCACTCGTCCATCATAGAAGGAGATGGATGTAT
66 GAAGAACTTGTTCAACCCTCACTCGTCCATCACAGAAGGAGATGGATATAT
266897 ATTTCCAATGGAAGGGTTCATAATGAAAAGAACTCGTCTGATGAGGGAGAAGAAGTTCCTAATGA
1 ATTTCCAATGGAAGGGTTCATAATGAAAAGAACTCGTCTGATGAGGGAGAAGAAGTTCCTAATGA
* **
266962 GAAGAACTTGTTCAACCGTCACTCGTCCATCACAGAAGGATG-TGGATCCACT
66 GAAGAACTTGTTCAACCCTCACTCGTCCATCACAGAAGGA-GATGGATATA-T
* * * * *
267014 -TTTCCAATAGAAGAGTTCATAATGAGAAGAACTCGTCTGATGAGCGAGAAGAAGTTCATAATGA
1 ATTTCCAATGGAAGGGTTCATAATGAAAAGAACTCGTCTGATGAGGGAGAAGAAGTTCCTAATGA
267078 GAAGA
66 GAAGA
267083 TGTAACACCC
Statistics
Matches: 280, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
116 277 0.99
117 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (116 bp):
ATTTCCAATGGAAGGGTTCATAATGAAAAGAACTCGTCTGATGAGGGAGAAGAAGTTCCTAATGA
GAAGAACTTGTTCAACCCTCACTCGTCCATCACAGAAGGAGATGGATATAT
Found at i:267894 original size:29 final size:29
Alignment explanation
Indices: 267852--267932 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
267842 TTTCATATGT
267852 TCATGTA-CTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
267880 TCATGTAGCTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
267909 TCATGTAGCTCATGTCATGTTCTC
1 TCATGTAGCTCATGTCAT-TTCTC
267933 ATATCACATA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 7 0.14
29 39 0.76
30 5 0.10
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.44
Consensus pattern (29 bp):
TCATGTAGCTCATGTCATTTCTCTTGTGA
Found at i:268309 original size:36 final size:36
Alignment explanation
Indices: 268262--268333 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
268252 TCTAATGGGA
268262 TGCACTACTTGTGCATCGGTGCATAAAATGCATTCG
1 TGCACTACTTGTGCATCGGTGCATAAAATGCATTCG
268298 TGCACTACTTGTGCATCGGTGCATAAAATGCATTCG
1 TGCACTACTTGTGCATCGGTGCATAAAATGCATTCG
268334 ATGTTTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (36 bp):
TGCACTACTTGTGCATCGGTGCATAAAATGCATTCG
Found at i:268319 original size:19 final size:19
Alignment explanation
Indices: 268262--268320 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
268252 TCTAATGGGA
268262 TGCACTACTTGTGCATCGG
1 TGCACTACTTGTGCATCGG
***
268281 TGCA-TA-AAATGCATTC-G
1 TGCACTACTTGTGCA-TCGG
268298 TGCACTACTTGTGCATCGG
1 TGCACTACTTGTGCATCGG
268317 TGCA
1 TGCA
268321 TAAAATGCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
17 9 0.30
18 8 0.27
19 13 0.43
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (19 bp):
TGCACTACTTGTGCATCGG
Found at i:268397 original size:64 final size:63
Alignment explanation
Indices: 268309--268428 Score: 145
Period size: 64 Copynumber: 1.9 Consensus size: 63
268299 GCACTACTTG
* * * *
268309 TGCATCGGTGCATAAAATGCATTCGATGTTTTATTATT-AATGGGATGCATCGATGCATGCCTTA
1 TGCATCGATGCATAAAATGCATTCGATCTTTTATT-TTAAAAGAG-TGCATCGATGCATGCCTTA
* *
268373 TGCATCGATGCACT-AATTGCATTCGGTCTTTTATTTTAAAAGAGTGCATCGATGCA
1 TGCATCGATGCA-TAAAATGCATTCGATCTTTTATTTTAAAAGAGTGCATCGATGCA
268429 CAACATGTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
63 14 0.29
64 33 0.69
65 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.36
Consensus pattern (63 bp):
TGCATCGATGCATAAAATGCATTCGATCTTTTATTTTAAAAGAGTGCATCGATGCATGCCTTA
Found at i:269319 original size:44 final size:44
Alignment explanation
Indices: 269270--269425 Score: 222
Period size: 44 Copynumber: 3.5 Consensus size: 44
269260 CATCCATCGT
* * * *
269270 ATAAGGAGTTGGATCAGCGTAACCATTTCGCTTGATTCCATCAC
1 ATAAGGAGTTGGATCAGCATCATCATTTCGCTCGATTCCATCAC
* *
269314 ATAAGGAGTTGGATCAGCATCATCATTTCACTCGATTCCATCGC
1 ATAAGGAGTTGGATCAGCATCATCATTTCGCTCGATTCCATCAC
* *
269358 ATAAGGAGTTGGATCAACATCATCGTTTCGCTCGATTCCATCAC
1 ATAAGGAGTTGGATCAGCATCATCATTTCGCTCGATTCCATCAC
* *
269402 ATAAGGAGTTAGTTCAGCATCATC
1 ATAAGGAGTTGGATCAGCATCATC
269426 TCATTCAAGA
Statistics
Matches: 99, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 99 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (44 bp):
ATAAGGAGTTGGATCAGCATCATCATTTCGCTCGATTCCATCAC
Found at i:269411 original size:88 final size:88
Alignment explanation
Indices: 269262--269425 Score: 247
Period size: 88 Copynumber: 1.9 Consensus size: 88
269252 CCTTGACTCA
* * * * *
269262 TCCATCGTATAAGGAGTTGGATCAGCGTAACCATTTCGCTTGATTCCATCACATAAGGAGTTGGA
1 TCCATCGCATAAGGAGTTGGATCAACATAACCATTTCGCTCGATTCCATCACATAAGGAGTTAGA
269327 TCAGCATCATCATTTCACTCGAT
66 TCAGCATCATCATTTCACTCGAT
* * * *
269350 TCCATCGCATAAGGAGTTGGATCAACATCATCGTTTCGCTCGATTCCATCACATAAGGAGTTAGT
1 TCCATCGCATAAGGAGTTGGATCAACATAACCATTTCGCTCGATTCCATCACATAAGGAGTTAGA
269415 TCAGCATCATC
66 TCAGCATCATC
269426 TCATTCAAGA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 67 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (88 bp):
TCCATCGCATAAGGAGTTGGATCAACATAACCATTTCGCTCGATTCCATCACATAAGGAGTTAGA
TCAGCATCATCATTTCACTCGAT
Found at i:270564 original size:43 final size:43
Alignment explanation
Indices: 270451--270881 Score: 342
Period size: 43 Copynumber: 10.0 Consensus size: 43
270441 GTTTTGGGTC
* ** *
270451 TTTTTAATCACACTTTGCATCTTTATAATTGA-GCTCTT-ATT
1 TTTTTAATCTCACTTTTTACCTTTATAATTGAGGCTCTTAATT
*
270492 TTTTTAATCTCATTTTTTACCTTTATAATTGAGGCTCTTAATT
1 TTTTTAATCTCACTTTTTACCTTTATAATTGAGGCTCTTAATT
* * * * * *
270535 TTTTTTATCTTACTTCTTACTTTTGTAATTGAGAC-CTTTAATT
1 TTTTTAATCTCACTTTTTACCTTTATAATTGAGGCTC-TTAATT
* *
270578 TTCTCAATCTCACTTTTTACCTTTATAATTGAGGCTCTTAATTT
1 TTTTTAATCTCACTTTTTACCTTTATAATTGAGGCTCTTAA-TT
* * * * * * *
270622 TTTTTCAATCTTAATTTCTACATTCATAATTGAGG-TCCCTACTT
1 TTTTT-AATCTCACTTTTTACCTTTATAATTGAGGCT-CTTAATT
* * * *
270666 TTTTTAGTCTTACTTTTTACCTTTATAACTAAGGC-CTTTAATTTT
1 TTTTTAATCTCACTTTTTACCTTTATAATTGAGGCTC-TTAA--TT
* * ** *
270711 TTTTTCAATC-CAATTTTTACTTTTATAATTGAAACCCTTAATT
1 TTTTT-AATCTCACTTTTTACCTTTATAATTGAGGCTCTTAATT
* * *
270754 TTTTCAATCTCACTTTCTACCTTTATAATTAAGG-TCCTT-ATT
1 TTTTTAATCTCACTTTTTACCTTTATAATTGAGGCT-CTTAATT
* *
270796 TTTTTGAATCCCACTTTTTA-CTTTATAATTAAGGCTCTTAATT
1 TTTTT-AATCTCACTTTTTACCTTTATAATTGAGGCTCTTAATT
* * * * * *
270839 TTTTTAATTTC-TTTTTTACTTTTATAAATGAGGCCCCTAATT
1 TTTTTAATCTCACTTTTTACCTTTATAATTGAGGCTCTTAATT
270881 T
1 T
270882 AATCATCTTT
Statistics
Matches: 306, Mismatches: 65, Indels: 37
0.75 0.16 0.09
Matches are distributed among these distances:
41 33 0.11
42 59 0.19
43 140 0.46
44 14 0.05
45 56 0.18
46 4 0.01
ACGTcount: A:0.24, C:0.17, G:0.06, T:0.53
Consensus pattern (43 bp):
TTTTTAATCTCACTTTTTACCTTTATAATTGAGGCTCTTAATT
Found at i:270689 original size:88 final size:87
Alignment explanation
Indices: 270472--270800 Score: 341
Period size: 88 Copynumber: 3.8 Consensus size: 87
270462 ACTTTGCATC
* * * * *
270472 TTTATAATTGAG-CTCTTATTTTTTTAATCTCATTTTTTACCTTTATAATTGAGGCTCTTAATTT
1 TTTATAATTGAGACCCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCTCTTAATTT
*
270536 TTTTT--ATCTT-ACTTCTTACT
66 TTTTTCAATCTTAATTTC-TACT
* * * *
270556 TTTGTAATTGAGACCTTTAATTTTCTCAATCTCACTTTTTACCTTTATAATTGAGGCTCTTAATT
1 TTTATAATTGAGACC-CTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCTCTTAATT
*
270621 TTTTTTCAATCTTAATTTCTACA
65 TTTTTTCAATCTTAATTTCTACT
* * * * * * *
270644 TTCATAATTGAGGTCCCTACTTTTTTTAGTCTTACTTTTTACCTTTATAACTAAGGC-CTTTAAT
1 TTTATAATTGA-GACCCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCTC-TTAA-
* *
270708 TTTTTTTTCAATC-CAATTTTTACT
63 TTTTTTTTCAATCTTAATTTCTACT
* *
270732 TTTATAATTGAAACCCTTAATTTTTTCAATCTCACTTTCTACCTTTATAATTAAGG-TCCTT-AT
1 TTTATAATTGAGACCC-TAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCT-CTTAAT
270795 TTTTTT
64 TTTTTT
270801 GAATCCCACT
Statistics
Matches: 202, Mismatches: 32, Indels: 20
0.80 0.13 0.08
Matches are distributed among these distances:
84 11 0.05
85 1 0.00
86 57 0.28
87 5 0.02
88 107 0.53
89 21 0.10
ACGTcount: A:0.24, C:0.17, G:0.06, T:0.53
Consensus pattern (87 bp):
TTTATAATTGAGACCCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCTCTTAATTT
TTTTTCAATCTTAATTTCTACT
Found at i:270704 original size:131 final size:128
Alignment explanation
Indices: 270471--270881 Score: 390
Period size: 131 Copynumber: 3.2 Consensus size: 128
270461 CACTTTGCAT
* * *
270471 CTTTATAATTGA-GCTCTT-ATTTTTTT-AATCTCATTTTTTACCTTTATAATTGAGG-CTCTTA
1 CTTTATAATTGAGGCCCTTAATTTTTTTCAATCTCAATTTCTACCTTTATAATTGAGGTC-CTT-
* * * * * * *
270532 ATTTTTTTTATCTTACTTCTTACTTTTGTAATTGAGACCTTTAATTTTCTCAATCTCACTTTTTA
64 A-TTTTTTTATCTTACTTTTTACCTTTATAATTAAGGCCTTTAATTTTTTCAATCTCAATTTTTA
270597 C
128 C
* * * * *
270598 CTTTATAATTGAGGCTCTTAATTTTTTTTCAATCTTAATTTCTACATTCATAATTGAGGTCCCTA
1 CTTTATAATTGAGGCCCTTAA-TTTTTTTCAATCTCAATTTCTACCTTTATAATTGAGGTCCTTA
*
270663 CTTTTTTTAGTCTTACTTTTTACCTTTATAACTAAGGCCTTTAATTTTTTTTTCAATC-CAATTT
65 -TTTTTTTA-TCTTACTTTTTACCTTTATAATTAAGGCCTTTAA---TTTTTTCAATCTCAATTT
270727 TTAC
125 TTAC
* ** * *
270731 TTTTATAATTGAAACCCTTAA-TTTTTTCAATCTCACTTTCTACCTTTATAATTAAGGTCCTTAT
1 CTTTATAATTGAGGCCCTTAATTTTTTTCAATCTCAATTTCTACCTTTATAATTGAGGTCCTTAT
** * * *
270795 TTTTTTGAATCCCACTTTTTA-CTTTATAATTAAGG-CTCTTAATTTTTTTAATTTC-TTTTTTA
66 TTTTTT--ATCTTACTTTTTACCTTTATAATTAAGGCCT-TTAATTTTTTCAATCTCAATTTTTA
270857 C
128 C
* * *
270858 TTTTATAAATGAGGCCCCTAATTT
1 CTTTATAATTGAGGCCCTTAATTT
270882 AATCATCTTT
Statistics
Matches: 235, Mismatches: 35, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
127 45 0.19
128 9 0.04
129 3 0.01
130 40 0.17
131 100 0.43
132 2 0.01
133 26 0.11
134 10 0.04
ACGTcount: A:0.24, C:0.17, G:0.06, T:0.53
Consensus pattern (128 bp):
CTTTATAATTGAGGCCCTTAATTTTTTTCAATCTCAATTTCTACCTTTATAATTGAGGTCCTTAT
TTTTTTATCTTACTTTTTACCTTTATAATTAAGGCCTTTAATTTTTTCAATCTCAATTTTTAC
Found at i:271075 original size:23 final size:22
Alignment explanation
Indices: 271048--271104 Score: 70
Period size: 17 Copynumber: 2.8 Consensus size: 22
271038 TTAAGTTCGG
271048 GTCGGGTCGGGTTCGGGGATTT
1 GTCGGGTCGGGTTCGGGGATTT
271070 GT----TCGGG-TCGGGGATTT
1 GTCGGGTCGGGTTCGGGGATTT
271087 GTTCGGGTCGGGTTCGGG
1 G-TCGGGTCGGGTTCGGG
271105 TTTTGGGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 11
0.73 0.00 0.28
Matches are distributed among these distances:
17 11 0.38
18 6 0.21
22 7 0.24
23 5 0.17
ACGTcount: A:0.04, C:0.14, G:0.51, T:0.32
Consensus pattern (22 bp):
GTCGGGTCGGGTTCGGGGATTT
Found at i:271082 original size:17 final size:17
Alignment explanation
Indices: 271054--271098 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
271044 TCGGGTCGGG
271054 TCGGGTTCGGGGATTTGT
1 TCGGG-TCGGGGATTTGT
271072 TCGGGTCGGGGATTTGT
1 TCGGGTCGGGGATTTGT
271089 TCGGGTCGGG
1 TCGGGTCGGG
271099 TTCGGGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 22 0.81
18 5 0.19
ACGTcount: A:0.04, C:0.13, G:0.49, T:0.33
Consensus pattern (17 bp):
TCGGGTCGGGGATTTGT
Found at i:271142 original size:2 final size:2
Alignment explanation
Indices: 271135--271200 Score: 111
Period size: 2 Copynumber: 34.5 Consensus size: 2
271125 CCCCGCCCCG
271135 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
271177 AT AT AT AT AT AT -T A- AT -T AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
271201 AAATATTTTC
Statistics
Matches: 61, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
1 3 0.05
2 58 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:286868 original size:18 final size:18
Alignment explanation
Indices: 286845--286881 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
286835 AGGGATTATC
286845 AGTGGTCCTTCAGGACAT
1 AGTGGTCCTTCAGGACAT
* *
286863 AGTGGTCTTTCGGGACAT
1 AGTGGTCCTTCAGGACAT
286881 A
1 A
286882 TCAATGGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (18 bp):
AGTGGTCCTTCAGGACAT
Found at i:286895 original size:21 final size:21
Alignment explanation
Indices: 286841--286900 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
286831 GGCGAGGGAT
*
286841 TATCAGTGGTCCTTCAGGAC-
1 TATCAGTGGTCCTTCGGGACA
*
286861 -AT-AGTGGTCTTTCGGGACA
1 TATCAGTGGTCCTTCGGGACA
*
286880 TATCAATGGTCCTTCGGGACA
1 TATCAGTGGTCCTTCGGGACA
286901 AATATTCAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 14 0.42
19 2 0.06
20 2 0.06
21 15 0.45
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (21 bp):
TATCAGTGGTCCTTCGGGACA
Found at i:294674 original size:22 final size:23
Alignment explanation
Indices: 294626--294686 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
294616 ACCCCCATAA
* *
294626 GGGAACCGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCCTGTGAAG
*
294649 GGGAACCGATTCCCCCTGT-AGG
1 GGGAACCGATTCCCCCTGTGAAG
* *
294671 GGGAATCGATACCCCC
1 GGGAACCGATTCCCCC
294687 ATGGGGTTCT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
22 15 0.45
23 18 0.55
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.20
Consensus pattern (23 bp):
GGGAACCGATTCCCCCTGTGAAG
Found at i:304374 original size:20 final size:20
Alignment explanation
Indices: 304349--304388 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
304339 ATCCAAAAGA
304349 GGTTGAAGCCTGTTGACAAG
1 GGTTGAAGCCTGTTGACAAG
304369 GGTTGAAGCCTGTTGACAAG
1 GGTTGAAGCCTGTTGACAAG
304389 AACCTTCGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.35, T:0.25
Consensus pattern (20 bp):
GGTTGAAGCCTGTTGACAAG
Found at i:315640 original size:21 final size:21
Alignment explanation
Indices: 315615--315655 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
315605 GCATTCTAAT
*
315615 TTTTTATTTTCAAGTTTATTTG
1 TTTTAATTTT-AAGTTTATTTG
*
315637 TTTTAATTTTAATTTTATT
1 TTTTAATTTTAAGTTTATT
315656 CTTTTGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (21 bp):
TTTTAATTTTAAGTTTATTTG
Found at i:329251 original size:18 final size:18
Alignment explanation
Indices: 329228--329278 Score: 102
Period size: 18 Copynumber: 2.8 Consensus size: 18
329218 TGAATATTTA
329228 TCCCGAAGGACCACTATG
1 TCCCGAAGGACCACTATG
329246 TCCCGAAGGACCACTATG
1 TCCCGAAGGACCACTATG
329264 TCCCGAAGGACCACT
1 TCCCGAAGGACCACT
329279 GTATATCCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.27, C:0.35, G:0.22, T:0.16
Consensus pattern (18 bp):
TCCCGAAGGACCACTATG
Found at i:330096 original size:21 final size:22
Alignment explanation
Indices: 330055--330097 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
330045 TGGAATTTTC
330055 GTTCAAGCCCAGAAAAATCACT
1 GTTCAAGCCCAGAAAAATCACT
* *
330077 GTTCATGCCC-GAAAATTCACT
1 GTTCAAGCCCAGAAAAATCACT
330098 ATATCAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (22 bp):
GTTCAAGCCCAGAAAAATCACT
Found at i:331328 original size:21 final size:21
Alignment explanation
Indices: 331304--331377 Score: 130
Period size: 21 Copynumber: 3.5 Consensus size: 21
331294 ATTGTTTGTC
* *
331304 ACTCCTCCTTAATTACCACCT
1 ACTCCTCCTCAATTATCACCT
331325 ACTCCTCCTCAATTATCACCT
1 ACTCCTCCTCAATTATCACCT
331346 ACTCCTCCTCAATTATCACCT
1 ACTCCTCCTCAATTATCACCT
331367 ACTCCTCCTCA
1 ACTCCTCCTCA
331378 TACAAATATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.23, C:0.45, G:0.00, T:0.32
Consensus pattern (21 bp):
ACTCCTCCTCAATTATCACCT
Found at i:333061 original size:21 final size:21
Alignment explanation
Indices: 333031--333070 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
333021 AGGATGCAAC
*
333031 TGTTTTAGATGACACCACAGA
1 TGTTTCAGATGACACCACAGA
*
333052 TGTTTCAGATGCCACCACA
1 TGTTTCAGATGACACCACA
333071 TTCGGGTCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTTTCAGATGACACCACAGA
Found at i:343422 original size:149 final size:149
Alignment explanation
Indices: 343152--343449 Score: 596
Period size: 149 Copynumber: 2.0 Consensus size: 149
343142 ATTATATGAT
343152 AAACTTTAATAAATAAACTCTAAAAACTAATAGAACTAAACCTTTTTTGATAAAATCATGTGCTA
1 AAACTTTAATAAATAAACTCTAAAAACTAATAGAACTAAACCTTTTTTGATAAAATCATGTGCTA
343217 TTATTATCCACCCTAAGGTGGCATATCAAGTTACACCAGATAAAAAAGAATATTATTATAATTAA
66 TTATTATCCACCCTAAGGTGGCATATCAAGTTACACCAGATAAAAAAGAATATTATTATAATTAA
343282 GGACATGGGATTAAATGCA
131 GGACATGGGATTAAATGCA
343301 AAACTTTAATAAATAAACTCTAAAAACTAATAGAACTAAACCTTTTTTGATAAAATCATGTGCTA
1 AAACTTTAATAAATAAACTCTAAAAACTAATAGAACTAAACCTTTTTTGATAAAATCATGTGCTA
343366 TTATTATCCACCCTAAGGTGGCATATCAAGTTACACCAGATAAAAAAGAATATTATTATAATTAA
66 TTATTATCCACCCTAAGGTGGCATATCAAGTTACACCAGATAAAAAAGAATATTATTATAATTAA
343431 GGACATGGGATTAAATGCA
131 GGACATGGGATTAAATGCA
343450 CTTTCGTATA
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.30
Consensus pattern (149 bp):
AAACTTTAATAAATAAACTCTAAAAACTAATAGAACTAAACCTTTTTTGATAAAATCATGTGCTA
TTATTATCCACCCTAAGGTGGCATATCAAGTTACACCAGATAAAAAAGAATATTATTATAATTAA
GGACATGGGATTAAATGCA
Found at i:346426 original size:251 final size:251
Alignment explanation
Indices: 345982--346484 Score: 990
Period size: 251 Copynumber: 2.0 Consensus size: 251
345972 TGTTATTCAA
345982 AGTCCAACCAGAAGATATCATTGTTTTGAACATAAAAATGTAAGTTAATGAGAAATAGAAACTAA
1 AGTCCAACCAGAAGATATCATTGTTTTGAACATAAAAATGTAAGTTAATGAGAAATAGAAACTAA
346047 AGTAACAAGAGAAAACATGTTACATCAATAAAGCGAGTTCCAGTGAAATTCACAATGAGACCTTT
66 AGTAACAAGAGAAAACATGTTACATCAATAAAGCGAGTTCCAGTGAAATTCACAATGAGACCTTT
346112 ATTCTAATTACACTAAACCATGAAATCAAACTAAATAAGTTGCTTCATATAGATTATATTGCTAG
131 ATTCTAATTACACTAAACCATGAAATCAAACTAAATAAGTTGCTTCATATAGATTATATTGCTAG
346177 CTACAGTGAAGAAAAAAATAATGCACCTTCCATATCTTTCCCACTGGCAGCAGCAGC
196 CTACAGTGAAG-AAAAAATAATGCACCTTCCATATCTTTCCCACTGGCAGCAGCAGC
346234 AGTCCAACCAGAAGATATCATTG-TTTGAACATAAAAATGTAAGTTAATGAGAAATAGAAACTAA
1 AGTCCAACCAGAAGATATCATTGTTTTGAACATAAAAATGTAAGTTAATGAGAAATAGAAACTAA
346298 AGTAACAAGAGAAAACATGTTACATCAATAAAGCGAGTTCCAGTGAAATTCACAATGAGACCTTT
66 AGTAACAAGAGAAAACATGTTACATCAATAAAGCGAGTTCCAGTGAAATTCACAATGAGACCTTT
346363 ATTCTAATTACACTAAACCATGAAATCAAACTAAATAAGTTGCTTCATATAGATTATATTGCTAG
131 ATTCTAATTACACTAAACCATGAAATCAAACTAAATAAGTTGCTTCATATAGATTATATTGCTAG
346428 CTACAGTGAAGAAAAAATAATGCACCTTCCATATCTTTCCCACTGGCAGCAGCAGC
196 CTACAGTGAAGAAAAAATAATGCACCTTCCATATCTTTCCCACTGGCAGCAGCAGC
346484 A
1 A
346485 ATTAAGTTGG
Statistics
Matches: 251, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
250 46 0.18
251 182 0.73
252 23 0.09
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (251 bp):
AGTCCAACCAGAAGATATCATTGTTTTGAACATAAAAATGTAAGTTAATGAGAAATAGAAACTAA
AGTAACAAGAGAAAACATGTTACATCAATAAAGCGAGTTCCAGTGAAATTCACAATGAGACCTTT
ATTCTAATTACACTAAACCATGAAATCAAACTAAATAAGTTGCTTCATATAGATTATATTGCTAG
CTACAGTGAAGAAAAAATAATGCACCTTCCATATCTTTCCCACTGGCAGCAGCAGC
Found at i:348029 original size:21 final size:22
Alignment explanation
Indices: 347981--348029 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
347971 TATGTTTACA
**
347981 ATTTTTTTTGAAAAAGAAATTT
1 ATTTTTTTAAAAAAAGAAATTT
*
348003 AATTTTTTAAAAAAAGAAA-TT
1 ATTTTTTTAAAAAAAGAAATTT
348024 ATTTTT
1 ATTTTT
348030 AGGAAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (22 bp):
ATTTTTTTAAAAAAAGAAATTT
Found at i:350312 original size:18 final size:18
Alignment explanation
Indices: 350289--350342 Score: 99
Period size: 18 Copynumber: 3.0 Consensus size: 18
350279 CATTGGAATT
*
350289 GGGGATTGCAACTCTACC
1 GGGGATTGCAACTCCACC
350307 GGGGATTGCAACTCCACC
1 GGGGATTGCAACTCCACC
350325 GGGGATTGCAACTCCACC
1 GGGGATTGCAACTCCACC
350343 TTGTGGGGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (18 bp):
GGGGATTGCAACTCCACC
Found at i:353325 original size:21 final size:22
Alignment explanation
Indices: 353299--353343 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
353289 TGGGTTTTGT
* *
353299 TCGT-AACGTGTAATAATGGTG
1 TCGTAAACGAGTAAAAATGGTG
*
353320 TCGTAAATGAGTAAAAATGGTG
1 TCGTAAACGAGTAAAAATGGTG
353342 TC
1 TC
353344 CACATCCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (22 bp):
TCGTAAACGAGTAAAAATGGTG
Found at i:355505 original size:61 final size:60
Alignment explanation
Indices: 355437--355550 Score: 194
Period size: 61 Copynumber: 1.9 Consensus size: 60
355427 ATAGTTGAGC
355437 GATCATTTTGTAACTTTTAATAGTCGGTG-GACTCAACAAAAATAATGTCCTATAATTTAGG
1 GATCATTTTGTAACTTTTAATAGTCGG-GAGACTCAAC-AAAATAATGTCCTATAATTTAGG
*
355498 GATCATTTTGTAACTTTTAATAGTTGGGAGACTCAACAAAATAATGTCCTATA
1 GATCATTTTGTAACTTTTAATAGTCGGGAGACTCAACAAAATAATGTCCTATA
355551 GTCGGGTCAC
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
60 17 0.33
61 34 0.67
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (60 bp):
GATCATTTTGTAACTTTTAATAGTCGGGAGACTCAACAAAATAATGTCCTATAATTTAGG
Found at i:377924 original size:25 final size:23
Alignment explanation
Indices: 377874--377930 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 23
377864 TTTTATGCTA
377874 GGGGCGAACTTATAAATTTTAGAG
1 GGGGCGAACTTATAAATTTTA-AG
377898 GGGAGCGAACTTATAAAAGTTTT-AG
1 GGG-GCGAACTTAT-AAA-TTTTAAG
377923 GGGGCGAA
1 GGGGCGAA
377931 AACGATTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 8 0.27
25 15 0.50
26 3 0.10
27 4 0.13
ACGTcount: A:0.33, C:0.09, G:0.33, T:0.25
Consensus pattern (23 bp):
GGGGCGAACTTATAAATTTTAAG
Found at i:381565 original size:36 final size:36
Alignment explanation
Indices: 381518--381592 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
381508 AACGCATTAT
381518 GCTGGTCTCTATTTTTAATTAACTCTGGGGGTCTTG
1 GCTGGTCTCTATTTTTAATTAACTCTGGGGGTCTTG
*
381554 GCTGGTCTCTATTTTTAATTAACTCTGTGGGTCTTG
1 GCTGGTCTCTATTTTTAATTAACTCTGGGGGTCTTG
381590 GCT
1 GCT
381593 AGTGTGACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.13, C:0.17, G:0.24, T:0.45
Consensus pattern (36 bp):
GCTGGTCTCTATTTTTAATTAACTCTGGGGGTCTTG
Found at i:385796 original size:75 final size:75
Alignment explanation
Indices: 385673--385891 Score: 348
Period size: 75 Copynumber: 2.9 Consensus size: 75
385663 GTCTGTCTGC
* *
385673 AGGCTGCCAAGGAAACTGGTGCACTCCAAGAAGCCAAGGAAAGGCTGGAACAGGAAGTTAAAGAA
1 AGGCTGCCAAGGAAACTGGTGCACTCCAAGAAGCCAAGGAAAAGCTGGAACAGCAAGTTAAAGAA
*
385738 CTTAAGTTGA
66 CTTAAGATGA
* *
385748 AGGCTGCCAAGGACACTGGTGCATTCCAAGAAGCCAAGGAAAAGCTGGAACAGCAAGTTAAAGAA
1 AGGCTGCCAAGGAAACTGGTGCACTCCAAGAAGCCAAGGAAAAGCTGGAACAGCAAGTTAAAGAA
*
385813 CTTAAGATGC
66 CTTAAGATGA
* * * *
385823 AGGCTGCCAAGGAAACTGGGGAAGTCCAAGAAGCCAATGAAAAGCTGGAACAGCAAGTTAAAGAA
1 AGGCTGCCAAGGAAACTGGTGCACTCCAAGAAGCCAAGGAAAAGCTGGAACAGCAAGTTAAAGAA
385888 CTTA
66 CTTA
385892 CAAGCAGCTT
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 133 1.00
ACGTcount: A:0.40, C:0.18, G:0.28, T:0.14
Consensus pattern (75 bp):
AGGCTGCCAAGGAAACTGGTGCACTCCAAGAAGCCAAGGAAAAGCTGGAACAGCAAGTTAAAGAA
CTTAAGATGA
Found at i:387273 original size:19 final size:20
Alignment explanation
Indices: 387251--387291 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
387241 TCCTTTAGGG
387251 TTTTTTTC-TGGTTCTGATT
1 TTTTTTTCATGGTTCTGATT
* *
387270 TTTTTTTCATGTTTCTTATT
1 TTTTTTTCATGGTTCTGATT
387290 TT
1 TT
387292 CTTGTTGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.07, C:0.10, G:0.10, T:0.73
Consensus pattern (20 bp):
TTTTTTTCATGGTTCTGATT
Found at i:389165 original size:21 final size:21
Alignment explanation
Indices: 389139--389209 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
389129 CCAGCTACAC
** *
389139 CCGCAATAGTGCCTGCGACGG
1 CCGCAATAGCACCCGCGACGG
389160 CCGCAATAGCACCCGCGACGG
1 CCGCAATAGCACCCGCGACGG
*
389181 CCGCAATAGCACCCGCGATGG
1 CCGCAATAGCACCCGCGACGG
*
389202 CCACAATA
1 CCGCAATA
389210 ACGGTATTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.27, T:0.10
Consensus pattern (21 bp):
CCGCAATAGCACCCGCGACGG
Found at i:389935 original size:2 final size:2
Alignment explanation
Indices: 389923--389975 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
389913 TTGCAGAATT
*
389923 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
389965 TA TA TA TA TA T
1 TA TA TA TA TA T
389976 TTATTTTATT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:396732 original size:13 final size:12
Alignment explanation
Indices: 396714--396750 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
396704 AATTAAAAAT
396714 AAAATATTATTTA
1 AAAATA-TATTTA
396727 AAAATATATTTA
1 AAAATATATTTA
396739 AAAA-A-ATTTA
1 AAAATATATTTA
396749 AA
1 AA
396751 CGTAACATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 7 0.29
11 1 0.04
12 10 0.42
13 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAAATATATTTA
Done.