genome.fa.s9091.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009091.1 Hibiscus syriacus cultivar Beakdansim tig00112538_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76838

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987--1023	3	12.3	3	94	0	56	5	35	0	59	1.20
989--1027	9	4.3	9	90	0	51	7	33	0	58	1.26
7183--7272	32	2.8	32	85	5	112	45	18	4	31	1.69
8184--8222	19	2.1	19	85	4	53	38	2	0	58	1.12
20009--20056	23	2.0	23	84	4	60	45	14	10	29	1.78
32404--32479	31	2.4	31	80	2	89	26	31	27	14	1.95
32357--32479	63	2.0	63	82	6	151	25	29	28	17	1.97
35308--35346	7	5.3	7	88	11	60	25	25	35	12	1.92
35307--35346	15	2.7	15	100	0	80	25	25	37	12	1.91
35307--35349	8	5.6	8	89	10	72	23	25	37	13	1.92
35349--35384	13	2.8	13	100	0	72	16	16	50	16	1.79
35336--35389	18	3.3	18	73	24	64	14	18	50	16	1.79
37489--37563	30	2.4	31	80	6	89	26	30	28	14	1.95
40390--40421	15	2.1	15	100	0	64	25	25	37	12	1.91
40424--40460	13	2.8	13	83	0	56	13	21	45	18	1.84
40411--40464	18	3.3	18	73	24	64	12	20	48	18	1.81
40389--40424	8	4.6	8	93	6	65	22	25	38	13	1.91
42513--42685	75	2.3	74	81	3	197	29	18	12	39	1.87
46743--46792	25	2.0	25	100	0	100	16	28	4	52	1.61
46804--47025	111	2.0	111	100	0	444	28	9	22	39	1.84
49468--49494	2	13.5	2	100	0	54	48	0	0	51	1.00
49562--49630	6	11.3	6	93	3	120	0	47	1	50	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54875--55012	60	2.3	60	83	2	179	34	13	15	35	1.88
63052--63076	12	2.1	12	100	0	50	44	8	24	24	1.80
63154--63194	21	2.0	21	95	0	73	9	24	29	36	1.87
66309--66366	23	2.5	24	97	2	109	22	41	27	8	1.83
66563--66625	30	2.1	30	93	0	108	34	31	20	12	1.90
70236--70284	12	4.3	12	75	15	50	40	2	4	53	1.32

Tables:   1

The End!