genome.fa.s9092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009092.1 Hibiscus syriacus cultivar Beakdansim tig00112539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50849

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40--115	31	2.4	31	80	2	89	26	31	27	14	1.95
2926--2964	7	5.3	7	88	11	60	25	25	35	12	1.92
2925--2964	15	2.7	15	100	0	80	25	25	37	12	1.91
2925--2967	8	5.6	8	89	10	72	23	25	37	13	1.92
2967--3002	13	2.8	13	100	0	72	16	16	50	16	1.79
2954--3008	18	3.3	18	73	23	66	16	18	49	16	1.81
5100--5175	31	2.4	31	80	2	89	26	31	27	14	1.95
5053--5175	63	2.0	63	82	6	151	25	29	28	17	1.97
8002--8033	15	2.1	15	100	0	64	25	25	37	12	1.91
8036--8072	13	2.8	13	83	0	56	13	21	45	18	1.84
8023--8076	18	3.3	18	73	24	64	12	20	48	18	1.81
8001--8036	8	4.6	8	93	6	65	22	25	38	13	1.91
10121--10295	75	2.3	75	82	1	208	29	18	12	40	1.87
14360--14409	25	2.0	25	100	0	100	16	28	4	52	1.61
14421--14642	111	2.0	111	100	0	444	28	9	22	39	1.84
17176--17246	6	11.3	6	91	8	115	0	47	1	50	1.09
22561--22698	60	2.3	60	83	2	179	34	13	15	35	1.88
30823--30847	12	2.1	12	100	0	50	44	8	24	24	1.80
30927--30967	21	2.0	21	90	0	64	12	21	29	36	1.90
31537--31596	31	1.9	31	83	6	77	63	6	15	15	1.50
34154--34215	23	2.7	24	92	7	110	20	45	25	8	1.79
34413--34475	30	2.1	30	93	0	108	34	31	20	12	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41251--41289	13	2.9	13	82	17	53	7	10	0	82	0.86

Tables:   1

The End!