genome.fa.s9094.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009094.1 Hibiscus syriacus cultivar Beakdansim tig00112541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58366

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6291--6374	29	2.9	29	87	0	105	16	27	30	25	1.97
6474--6562	29	3.1	29	81	0	97	24	39	20	15	1.91
7089--7178	45	2.0	47	84	6	123	38	1	13	46	1.50
7334--7368	8	4.4	8	96	0	61	22	0	14	62	1.31
9552--9600	25	2.0	25	95	0	89	46	14	0	38	1.44
9553--9601	14	3.7	14	81	15	68	48	14	0	36	1.44
9619--9645	10	2.7	10	100	0	54	40	18	0	40	1.51
9629--9952	48	6.6	48	87	10	471	46	12	0	41	1.41
9649--9796	34	4.2	34	65	18	88	46	11	0	41	1.40
9568--10333	58	14.2	58	80	16	801	46	12	0	41	1.41
9687--10332	107	6.2	98	78	18	641	45	12	0	42	1.41
9805--9927	21	5.3	21	63	29	54	47	10	0	42	1.38
9985--10072	21	4.3	21	64	18	60	45	14	0	39	1.45
9568--10282	368	1.9	368	92	6	1205	46	11	0	41	1.40
10055--10332	48	5.3	49	80	15	276	44	12	0	42	1.41
10195--10340	24	6.3	23	65	25	60	43	13	0	43	1.44
13822--13881	28	2.1	28	100	0	120	56	13	0	30	1.37
14396--14507	29	3.9	29	90	0	143	15	25	37	22	1.93
14396--14537	29	4.9	29	86	2	115	15	22	38	23	1.92
14628--14724	29	3.3	29	94	0	167	27	32	25	13	1.93
14903--14930	5	5.6	5	100	0	56	42	39	0	17	1.50
16335--16364	9	3.3	9	90	0	51	23	3	0	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35436--35578	46	3.0	46	66	16	130	39	8	8	43	1.65
38104--38178	38	2.0	38	86	0	105	38	14	6	40	1.73
43529--43592	32	2.0	32	90	0	101	32	6	17	43	1.74
44217--44250	14	2.6	13	90	9	52	14	26	14	44	1.84
48901--48948	19	2.5	20	82	3	62	29	12	6	52	1.63
49808--49877	34	2.1	32	86	5	95	22	31	14	31	1.94
55562--55600	21	1.9	20	84	5	51	30	7	7	53	1.57
55970--55999	2	15.0	2	92	0	51	50	3	0	46	1.18

Tables:   1

The End!