Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009095.1 Hibiscus syriacus cultivar Beakdansim tig00112542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71342
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:12648 original size:37 final size:34
Alignment explanation
Indices: 12595--12668 Score: 103
Period size: 37 Copynumber: 2.1 Consensus size: 34
12585 TAATGACTCA
* *
12595 TCTCACTAAATTAACTAATTATTGGTAAAGTTAACTT
1 TCTCACTAAATCAACT-ATTA-TGATAAA-TTAACTT
12632 TCTCACTAAATCAACTATTATGATAAATTAACTT
1 TCTCACTAAATCAACTATTATGATAAATTAACTT
12666 TCT
1 TCT
12669 TTCTTTCAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 10 0.29
35 6 0.17
36 4 0.11
37 15 0.43
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.41
Consensus pattern (34 bp):
TCTCACTAAATCAACTATTATGATAAATTAACTT
Found at i:18051 original size:32 final size:32
Alignment explanation
Indices: 18015--18078 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
18005 GGTAGATATC
* *
18015 ATGATATGATAGGTGTTATATTCATCTTTGAA
1 ATGATAGGATAGATGTTATATTCATCTTTGAA
*
18047 ATGATAGGATATATGTTATATTCATCTTTGAA
1 ATGATAGGATAGATGTTATATTCATCTTTGAA
18079 TAACACTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (32 bp):
ATGATAGGATAGATGTTATATTCATCTTTGAA
Found at i:23432 original size:19 final size:20
Alignment explanation
Indices: 23389--23436 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
23379 TCTAAATCCT
*
23389 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
23409 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
23428 TTTTCAAAA
1 TTTTCAAAA
23437 GAAAATCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:24356 original size:34 final size:32
Alignment explanation
Indices: 24296--24365 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
24286 CCTTACAAAC
*
24296 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
* *
24328 TCCCTAGCTTTTACACGTGCTAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGCTAAACTAGAACCTT
24362 TCCC
1 TCCC
24366 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.33
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
Found at i:30158 original size:21 final size:20
Alignment explanation
Indices: 30126--30164 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
30116 AAGTTTAATT
*
30126 TTTTTATATTAAAGTATGCC
1 TTTTTATATTAAAATATGCC
*
30146 TTTTTACTTTTAAAATATG
1 TTTTTA-TATTAAAATATG
30165 TTATGAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (20 bp):
TTTTTATATTAAAATATGCC
Found at i:30551 original size:2 final size:2
Alignment explanation
Indices: 30544--30581 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
30534 ATATTATTTG
30544 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30582 AGATAGTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34512 original size:13 final size:13
Alignment explanation
Indices: 34468--34514 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
34458 CTTTTCTTTG
*
34468 ATATTGAAAATTAA
1 ATATTTAAAA-TAA
34482 ATA-TTAAAATAA
1 ATATTTAAAATAA
*
34494 TTTATTTAAAATAA
1 -ATATTTAAAATAA
34508 ATATTTA
1 ATATTTA
34515 TTTATTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 3 0.11
13 13 0.46
14 12 0.43
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (13 bp):
ATATTTAAAATAA
Found at i:35982 original size:3 final size:3
Alignment explanation
Indices: 35974--36065 Score: 166
Period size: 3 Copynumber: 30.7 Consensus size: 3
35964 AATATATATT
* *
35974 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
36022 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
36066 TGGATAAAAA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 85 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:36631 original size:113 final size:113
Alignment explanation
Indices: 36387--36939 Score: 930
Period size: 113 Copynumber: 4.9 Consensus size: 113
36377 AGAATTATGC
* * * *
36387 AAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
36452 TATGAAC-TTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
36499 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
36564 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
36612 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
36677 TATGAACTTTCTCTGGAAAGGCTGATCCATCAAATGATGGATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
36725 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * **
36790 TATGAACTTTCTCTGGAAAAAATAATCCATCAAGTGATGAATTCAGAC
66 TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
36838 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
36903 TATGAACCTTCTCTGGCAAAA-ACTGATCCATCAAATG
66 TATGAACTTTCTCTGG-AAAAGA-TGATCCATCAAATG
36940 GATTCGAAAT
Statistics
Matches: 418, Mismatches: 20, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
112 68 0.16
113 334 0.80
114 16 0.04
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (113 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGATGATCCATCAAATGATGAATTCAGGT
Found at i:37789 original size:84 final size:84
Alignment explanation
Indices: 37642--38314 Score: 1220
Period size: 84 Copynumber: 8.0 Consensus size: 84
37632 TTCATCTTTT
37642 AATTACAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA
1 AATT-CAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA
37707 TTGAGCACATTATTCTTCCA
65 TTGAGCACATTATTCTTCCA
*
37727 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAAATGCTAT
1 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
37792 TGAGCACATTATTCTTCCA
66 TGAGCACATTATTCTTCCA
* *
37811 AATTCAATGATTGGTTCTGTCCAACCAGATCAAATAACTCAAAGAACACTTCCAGAAAATGCTAT
1 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
37876 TGAGCACATTATTCTTCCA
66 TGAGCACATTATTCTTCCA
37895 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
37960 TGAGCACATTATTCTTCCA
66 TGAGCACATTATTCTTCCA
* *
37979 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCACAGAATACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
*
38044 TGAGCATATTATTCTTCCA
66 TGAGCACATTATTCTTCCA
*
38063 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCACAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
* *
38128 TGAGCATATTATTTTTCCA
66 TGAGCACATTATTCTTCCA
38147 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
*
38212 TGAGCATATTATTCTTCCA
66 TGAGCACATTATTCTTCCA
* *
38231 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCACAGAACACTTTCAGAAGATGCTAT
1 AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
*
38296 TGAGCATATTATTCTTCCA
66 TGAGCACATTATTCTTCCA
38315 GTTAATGTTT
Statistics
Matches: 575, Mismatches: 13, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
84 571 0.99
85 4 0.01
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (84 bp):
AATTCAATGATTGGTTCTGTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
TGAGCACATTATTCTTCCA
Found at i:39477 original size:14 final size:13
Alignment explanation
Indices: 39449--39499 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
39439 CCTTAACCCC
* *
39449 CTTTCTTTTTCTT
1 CTTTTTTTTTTTT
39462 CTTCTTTTTTTTTT
1 CTT-TTTTTTTTTT
39476 CTTTCTTTTTTTTT
1 CTTT-TTTTTTTTT
39490 CTTTTTTTTT
1 CTTTTTTTTT
39500 CTTCAATGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 10 0.29
14 24 0.71
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
CTTTTTTTTTTTT
Found at i:39479 original size:27 final size:25
Alignment explanation
Indices: 39449--39499 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
39439 CCTTAACCCC
39449 CTTTCTTTTTCTTCTTCTTTTTTTTTT
1 CTTTCTTTTT-TT-TTCTTTTTTTTTT
39476 CTTTCTTTTTTTTTCTTTTTTTTT
1 CTTTCTTTTTTTTTCTTTTTTTTT
39500 CTTCAATGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 12 0.50
26 2 0.08
27 10 0.42
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (25 bp):
CTTTCTTTTTTTTTCTTTTTTTTTT
Found at i:39490 original size:10 final size:10
Alignment explanation
Indices: 39449--39502 Score: 65
Period size: 10 Copynumber: 5.3 Consensus size: 10
39439 CCTTAACCCC
*
39449 CTTTCTTTTT
1 CTTTTTTTTT
39459 CTTCTTCTTTTT
1 CTT-TT-TTTTT
*
39471 -TTTTTCTTT
1 CTTTTTTTTT
39480 CTTTTTTTTT
1 CTTTTTTTTT
39490 CTTTTTTTTT
1 CTTTTTTTTT
39500 CTT
1 CTT
39503 CAATGCTCCT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
9 4 0.11
10 26 0.68
11 3 0.08
12 5 0.13
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:50049 original size:13 final size:15
Alignment explanation
Indices: 50027--50063 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
50017 TTTGACAGAA
50027 AAAT-AAATAC-TG-
1 AAATAAAATACTTGC
50039 AAATAAAATACTTGC
1 AAATAAAATACTTGC
50054 AAATAAAATA
1 AAATAAAATA
50064 AAACATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.18
13 6 0.27
14 2 0.09
15 10 0.45
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.24
Consensus pattern (15 bp):
AAATAAAATACTTGC
Found at i:50102 original size:18 final size:17
Alignment explanation
Indices: 50054--50104 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
50044 AAATACTTGC
*
50054 AAATAAAATAAAACATAT
1 AAAT-AAATAAAAAATAT
*
50072 AAAT-ATTATAAAAATAAT
1 AAATAAATA-AAAAAT-AT
50090 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
50105 TTGAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 3 0.11
17 5 0.19
18 16 0.59
19 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAATAAAAAATAT
Found at i:52264 original size:3 final size:3
Alignment explanation
Indices: 52256--52380 Score: 241
Period size: 3 Copynumber: 41.7 Consensus size: 3
52246 AATATATATT
*
52256 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
52304 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
52352 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
52381 TGGATAAAAA
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 120 1.00
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:52703 original size:30 final size:30
Alignment explanation
Indices: 52662--52756 Score: 181
Period size: 30 Copynumber: 3.2 Consensus size: 30
52652 AAGCTCAAGA
*
52662 CTCTAAACGTTTCCGGCAACCTTCTCCAAT
1 CTCTCAACGTTTCCGGCAACCTTCTCCAAT
52692 CTCTCAACGTTTCCGGCAACCTTCTCCAAT
1 CTCTCAACGTTTCCGGCAACCTTCTCCAAT
52722 CTCTCAACGTTTCCGGCAACCTTCTCCAAT
1 CTCTCAACGTTTCCGGCAACCTTCTCCAAT
52752 CTCTC
1 CTCTC
52757 TAAGTACATG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.20, C:0.40, G:0.09, T:0.31
Consensus pattern (30 bp):
CTCTCAACGTTTCCGGCAACCTTCTCCAAT
Found at i:56795 original size:44 final size:44
Alignment explanation
Indices: 56729--56818 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 44
56719 TTGAGGGTTA
* *
56729 TACGAGGTCATTCGGGACATATATGTGGTCCTTCGAGATAATTC
1 TACGAGGTCATTAGGGACATATATGTGGTCCTTCGAGACAATTC
* *
56773 TACGAGGTGC-TTAGGGATATATATGTGGTCCTTCGGGACAATTC
1 TACGAGGT-CATTAGGGACATATATGTGGTCCTTCGAGACAATTC
56817 TA
1 TA
56819 TATGGCATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (44 bp):
TACGAGGTCATTAGGGACATATATGTGGTCCTTCGAGACAATTC
Found at i:56810 original size:21 final size:21
Alignment explanation
Indices: 56734--56810 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
56724 GGTTATACGA
* *
56734 GGTCATTCGGGACATATATGT
1 GGTCCTTCGGGATATATATGT
* * * *
56755 GGTCCTTCGAGATAATTCTACGA
1 GGTCCTTCGGGAT-A-TATATGT
* *
56778 GGTGCTTAGGGATATATATGT
1 GGTCCTTCGGGATATATATGT
56799 GGTCCTTCGGGA
1 GGTCCTTCGGGA
56811 CAATTCTATA
Statistics
Matches: 40, Mismatches: 14, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
21 24 0.60
22 2 0.05
23 14 0.35
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (21 bp):
GGTCCTTCGGGATATATATGT
Found at i:57074 original size:18 final size:18
Alignment explanation
Indices: 57031--57074 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
57021 TAAAAGAAAT
57031 TAATGATAAAAATATTGA
1 TAATGATAAAAATATTGA
* * *
57049 TAACGATAAGAATGTTGA
1 TAATGATAAAAATATTGA
*
57067 TGATGATA
1 TAATGATA
57075 TATATGTATG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.48, C:0.02, G:0.18, T:0.32
Consensus pattern (18 bp):
TAATGATAAAAATATTGA
Found at i:60391 original size:23 final size:23
Alignment explanation
Indices: 60327--60391 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
60317 CTTATATGGA
*
60327 ACTTCGGTGCATTTCTACGCGGC
1 ACTTCGGTGCATTTCTATGCGGC
* * * * *
60350 ACTACAGTGCAATTCTATGTGGT
1 ACTTCGGTGCATTTCTATGCGGC
*
60373 ACTTCGGTGCATTTATATG
1 ACTTCGGTGCATTTCTATG
60392 AGCTGTGGTG
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (23 bp):
ACTTCGGTGCATTTCTATGCGGC
Found at i:67741 original size:23 final size:23
Alignment explanation
Indices: 67723--67781 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
67713 CTCGTATAAA
67723 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCGCGTAGAAT
* * *
67746 TACACCAAAGTGTCGCGTAGAAT
1 TGCACCGAAGTGCCGCGTAGAAT
*
67769 TGCACCGTAGTGC
1 TGCACCGAAGTGC
67782 TATATAAGAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.20
Consensus pattern (23 bp):
TGCACCGAAGTGCCGCGTAGAAT
Done.