genome.fa.s9098.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009098.1 Hibiscus syriacus cultivar Beakdansim tig00112552_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159790

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8927--8985	29	2.0	29	86	0	82	28	23	16	30	1.97
9378--9798	213	2.0	212	89	4	652	36	20	12	30	1.89
11147--11172	12	2.2	12	100	0	52	30	46	0	23	1.53
12676--12766	2	48.5	2	68	12	59	49	0	0	50	1.00
12691--12738	7	6.4	7	77	13	51	50	0	0	50	1.00
17879--17911	17	2.0	17	88	5	50	27	3	0	69	1.03
18175--18285	45	2.3	47	87	7	163	40	18	9	30	1.84
20274--20315	16	2.7	15	85	7	57	61	14	2	21	1.43
23552--23603	20	2.6	20	96	0	95	38	26	13	21	1.90
23659--23852	20	9.6	20	76	8	76	35	25	19	19	1.95
23655--23852	40	5.0	39	81	4	200	35	26	19	19	1.95
23659--23851	60	3.2	60	83	0	251	35	25	19	19	1.95
24231--24301	33	2.2	33	92	0	115	11	22	18	47	1.80
24422--24476	14	3.6	14	73	21	56	41	23	25	9	1.83
24422--24492	33	2.2	33	94	0	124	43	25	22	8	1.81
24488--24585	19	5.7	19	70	22	81	10	24	22	42	1.84
24510--24599	14	5.7	14	74	23	81	8	25	23	42	1.83
24493--24607	33	3.5	33	95	0	212	9	24	20	45	1.81
26185--26313	19	7.3	19	75	17	125	45	28	17	8	1.77
26221--26313	33	2.8	32	91	4	150	46	27	18	7	1.76
26185--26313	52	2.5	52	74	14	140	45	28	17	8	1.77
26309--26443	19	7.6	19	75	16	128	11	19	23	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26331--26387	14	3.7	14	77	20	60	10	21	22	45	1.82
26314--26406	33	2.8	33	95	0	168	10	20	21	47	1.80
27927--27962	14	2.6	14	95	0	63	33	0	22	44	1.53
28069--28170	19	5.6	19	84	13	151	44	17	23	14	1.86
28177--28462	33	8.5	33	87	9	252	13	20	18	46	1.83
28177--28462	52	5.6	50	78	12	235	13	20	18	46	1.83
28177--28395	85	2.6	85	95	0	393	14	21	17	46	1.84
28218--28431	118	1.8	119	96	1	403	13	21	18	47	1.82
30746--30770	12	2.1	12	100	0	50	0	28	0	72	0.86
30945--30991	24	2.0	24	87	8	69	38	21	14	25	1.92
31674--32042	20	18.5	20	86	4	458	20	18	26	34	1.96
47389--47488	21	4.8	21	66	22	66	56	2	0	42	1.11
54512--54542	2	15.5	2	100	0	62	51	0	0	48	1.00
57485--57530	21	2.3	21	85	7	60	28	13	0	58	1.35
59428--59463	2	18.0	2	100	0	72	50	0	0	50	1.00
60456--60486	16	1.9	16	93	0	53	51	12	9	25	1.70
60247--62829	711	3.6	710	85	3	3219	31	12	14	40	1.84
62231--66281	599	6.8	600	95	0	7246	33	13	13	39	1.84
66984--67056	30	2.4	30	95	0	128	30	24	20	24	1.99
67039--67167	63	2.1	61	87	7	188	32	20	20	27	1.97
67042--67169	31	4.1	31	80	9	152	33	21	18	26	1.96
67552--67610	25	2.4	25	97	0	109	49	8	5	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68657--68701	21	2.1	21	87	0	63	15	24	28	31	1.96
71851--71923	30	2.4	30	95	0	128	30	24	20	24	1.99
71906--72034	63	2.1	61	87	7	188	32	20	20	27	1.97
71909--72036	31	4.1	31	80	9	152	33	21	18	26	1.96
72419--72477	25	2.4	25	97	0	109	49	8	5	37	1.55
73525--73569	21	2.1	21	87	0	63	15	24	28	31	1.96
74287--76746	727	3.5	715	80	7	2716	32	11	13	41	1.81
76735--76783	24	2.0	24	96	0	89	34	16	2	46	1.58
78147--78174	14	2.0	14	100	0	56	35	7	21	35	1.81
78477--78701	75	3.0	75	92	1	364	29	16	17	36	1.92
88230--88337	34	2.9	38	85	10	170	57	4	1	36	1.30
95491--95524	16	2.1	17	94	5	61	38	32	5	23	1.79
98471--98528	28	2.0	28	86	3	80	13	6	10	68	1.37
98482--98535	28	1.9	28	84	0	72	16	5	11	66	1.40
104934--104993	26	2.3	27	88	5	88	33	30	16	20	1.94
113030--113107	31	2.5	31	78	12	88	21	20	21	35	1.96
113080--113181	30	3.4	30	91	1	152	21	20	25	32	1.98
113446--113485	2	20.0	2	100	0	80	50	0	0	50	1.00
120787--120820	2	17.0	2	100	0	68	50	0	0	50	1.00
123386--123410	2	12.5	2	100	0	50	52	0	48	0	1.00
128170--128202	15	2.2	15	94	0	57	45	0	0	54	0.99
129078--129231	60	2.6	59	83	6	177	33	19	3	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129079--129167	29	3.0	29	71	18	83	32	16	4	46	1.68
135101--135155	22	2.5	22	93	0	101	27	0	10	61	1.29
143935--143971	16	2.4	16	95	4	67	45	0	18	35	1.50
158513--158607	42	2.3	42	90	3	147	16	11	16	54	1.70
158804--158853	16	3.2	16	78	18	61	60	0	0	40	0.97
158828--158884	30	1.9	29	82	3	69	54	0	1	43	1.10
158864--158922	22	2.7	22	81	0	73	54	0	0	45	0.99
158907--158965	30	2.0	30	93	0	100	55	0	3	40	1.16
159281--159325	15	3.1	15	77	6	56	31	17	6	44	1.75
159304--159346	21	2.0	21	90	0	68	27	23	9	39	1.85
159554--159604	20	2.5	21	81	12	61	52	0	0	47	1.00
159567--159611	20	2.2	20	88	0	63	48	0	0	51	1.00
159716--159764	19	2.6	18	81	15	55	53	0	6	40	1.26

Tables:   1

The End!