genome.fa.s91.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000091.1 Hibiscus syriacus cultivar Beakdansim tig00000170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  340608

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649--687	12	3.4	11	82	10	51	53	0	2	43	1.14
900--924	2	12.5	2	100	0	50	52	0	0	48	1.00
22994--23076	36	2.3	36	93	0	139	36	4	24	34	1.77
28890--28947	20	2.9	20	89	0	89	37	5	27	29	1.78
29812--29899	3	28.0	3	72	22	58	64	0	0	35	0.94
29812--29920	16	6.9	16	72	22	72	64	0	0	35	0.94
29809--29903	7	14.3	7	72	16	51	65	0	0	34	0.93
29812--29912	25	3.8	28	77	15	92	64	0	0	35	0.94
29813--29912	50	2.0	49	83	12	125	65	0	0	35	0.93
29984--30035	14	3.8	13	78	12	50	57	0	0	42	0.98
32317--32412	17	5.8	16	75	12	77	34	2	2	61	1.19
32322--32362	18	2.4	18	88	8	59	31	0	2	65	1.05
32332--32396	22	3.2	21	75	12	55	36	1	1	60	1.16
65986--66015	11	2.8	11	95	5	53	0	0	16	83	0.65
74804--75194	65	6.1	65	87	2	549	32	21	13	31	1.93
74804--75160	193	1.8	195	91	1	592	33	22	12	30	1.92
82568--82632	28	2.3	28	97	0	121	44	10	10	33	1.74
84114--84220	20	5.4	20	78	13	123	35	26	21	16	1.95
84111--84220	39	2.8	38	91	4	175	36	25	21	16	1.94
84308--84346	6	6.5	6	100	0	78	33	51	15	0	1.44
85083--85114	5	6.4	5	100	0	64	0	40	21	37	1.54
85086--85120	15	2.3	15	90	0	52	0	37	25	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87210--87239	2	15.0	2	100	0	60	50	0	0	50	1.00
101101--101172	9	7.6	9	75	17	56	18	26	26	29	1.98
101101--101139	21	1.9	21	89	5	62	17	25	23	33	1.96
101100--101172	28	2.5	31	86	10	109	17	26	27	28	1.98
101102--101192	28	3.2	27	83	10	85	16	25	27	30	1.97
101193--101252	5	11.2	5	79	13	66	18	53	21	6	1.67
101193--101259	22	3.0	22	100	0	134	17	50	22	8	1.74
101249--101279	7	4.4	7	100	0	62	16	29	29	25	1.96
108380--108472	10	9.7	9	76	13	78	16	25	27	30	1.96
108380--108472	19	4.8	20	78	15	95	16	25	27	30	1.96
108379--108453	29	2.5	30	89	8	118	17	26	26	29	1.97
108380--108472	29	3.2	28	86	6	105	16	25	27	30	1.96
108473--108532	5	11.2	5	79	13	66	18	53	21	6	1.67
108473--108539	22	3.0	22	100	0	134	17	50	22	8	1.74
108529--108559	7	4.4	7	100	0	62	16	29	29	25	1.96
121307--121344	12	3.2	12	92	0	67	7	15	50	26	1.72
121307--121361	24	2.3	24	90	0	83	12	14	47	25	1.80
121362--121463	32	3.2	32	78	12	102	47	0	0	52	1.00
123050--123087	6	6.3	6	96	0	58	0	60	15	23	1.35
141326--141379	21	2.6	21	96	0	99	31	14	5	48	1.67
154987--155012	2	13.0	2	100	0	52	50	0	50	0	1.00
156296--156343	22	2.2	22	84	0	60	47	29	12	10	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156314--156376	32	1.9	32	83	3	81	44	28	12	14	1.82
156314--156384	33	2.2	32	82	2	79	43	29	12	14	1.82
156473--156527	18	2.9	18	76	13	58	50	0	1	47	1.11
157110--157199	32	2.8	31	80	5	90	38	24	12	24	1.89
158360--158386	14	1.9	14	100	0	54	48	29	0	22	1.51
158389--158428	21	1.9	21	90	10	64	45	25	5	25	1.73
159984--160014	16	1.9	16	93	0	53	16	9	22	51	1.73
161542--161580	15	2.6	15	91	0	60	17	17	15	48	1.81
165401--165457	2	28.5	2	96	0	105	50	0	0	49	1.00
170593--170636	22	2.0	22	91	8	72	45	4	4	45	1.44
172856--172892	20	1.9	19	89	10	58	45	5	24	24	1.74
173032--173108	37	2.1	38	87	4	113	46	5	1	46	1.33
193040--193066	2	13.5	2	100	0	54	48	0	0	51	1.00
194024--194061	16	2.3	17	86	4	51	23	7	2	65	1.32
208993--209024	2	16.0	2	100	0	64	50	0	0	50	1.00
210309--210470	63	2.5	64	80	4	150	24	19	22	33	1.97
210350--210470	64	1.9	63	86	1	170	24	17	23	34	1.96
229041--229067	2	13.5	2	100	0	54	51	0	0	48	1.00
229467--229491	11	2.3	11	100	0	50	56	12	8	24	1.62
243228--243397	78	2.2	78	84	5	211	37	10	18	34	1.84
244982--245074	39	2.5	36	85	7	114	43	9	15	32	1.79
248309--248343	16	2.1	17	94	5	63	31	8	25	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249093--249125	15	2.1	16	88	5	50	51	15	24	9	1.72
265011--265682	225	3.0	226	90	1	1010	27	19	16	37	1.93
265011--265682	113	6.0	113	90	1	1019	27	19	16	37	1.93
265011--265682	338	2.0	337	92	0	1121	27	19	16	37	1.93
266805--266845	18	2.3	18	91	0	64	60	7	2	29	1.36
267219--267268	22	2.4	20	80	6	55	4	16	0	80	0.87
267208--267267	30	2.0	31	87	9	88	5	13	0	81	0.84
267208--267251	14	3.0	14	84	12	61	2	13	0	84	0.73
267210--267264	18	3.2	16	80	15	58	5	10	0	83	0.79
267211--267267	8	7.2	8	75	11	55	5	12	0	82	0.82
270776--270807	9	3.6	9	91	0	55	56	0	21	21	1.43
277920--277961	22	1.9	22	90	9	68	47	0	2	50	1.14
278403--278449	23	2.0	23	83	0	58	51	0	2	46	1.13
280091--280151	3	19.7	3	93	6	104	65	0	0	34	0.93
282219--282260	17	2.4	18	88	7	61	42	2	0	54	1.13
283430--283474	17	2.7	16	83	16	56	17	8	0	73	1.08
295117--295293	95	1.9	95	84	2	239	37	23	18	20	1.94
296087--296151	20	3.0	22	80	13	73	46	0	1	52	1.10
296084--296147	17	3.8	16	70	22	51	43	0	1	54	1.09
297649--297680	13	2.3	15	89	10	50	15	9	0	75	1.05
316467--316500	9	3.7	9	96	4	59	50	17	8	23	1.74
316506--316893	184	2.1	184	93	2	656	45	7	2	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317874--317936	19	3.2	19	79	20	67	20	15	1	61	1.41
321678--321733	28	2.0	28	89	0	85	28	25	19	26	1.99
329272--329303	2	16.5	2	93	6	57	0	0	46	53	1.00

Tables:   1

The End!