genome.fa.s910.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000910.1 Hibiscus syriacus cultivar Beakdansim tig00001809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95025

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2823--2897	30	2.5	30	82	4	89	62	6	12	18	1.50
2823--2906	30	2.8	30	78	3	80	61	9	10	17	1.54
3477--3508	3	10.7	3	93	0	55	65	3	0	31	1.08
6053--6097	23	2.0	23	95	0	81	48	4	11	35	1.59
12665--12711	20	2.3	20	92	0	76	14	36	23	25	1.93
19934--19972	16	2.4	16	86	4	51	35	0	2	61	1.10
28172--28362	102	1.9	102	82	4	242	32	14	18	34	1.91
32010--32053	21	2.1	21	86	0	61	29	22	22	25	1.99
32971--33043	24	3.0	25	84	9	98	24	21	21	31	1.98
37339--37381	18	2.4	16	79	20	50	65	0	30	4	1.13
38887--38992	43	2.4	43	79	4	133	39	16	15	28	1.89
40292--40334	18	2.4	16	79	20	50	65	2	30	2	1.18
42625--43087	242	1.9	241	89	3	716	40	13	18	27	1.88
43077--43137	27	2.3	27	100	0	122	32	6	26	34	1.82
45556--45802	45	5.6	45	79	9	269	29	19	10	40	1.84
45642--45841	90	2.2	90	84	1	249	29	23	9	37	1.86
45559--45841	135	2.2	128	81	8	311	29	21	10	38	1.86
46271--46325	22	2.7	20	78	10	74	25	27	14	32	1.95
48082--48120	20	2.0	20	89	0	60	43	15	2	38	1.60
48729--48764	2	18.0	2	100	0	72	50	0	0	50	1.00
50941--51010	31	2.2	31	82	2	86	45	14	12	27	1.81
51080--51147	32	2.2	32	89	2	102	33	13	22	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64918--64997	39	2.1	39	92	0	133	38	20	26	15	1.91
67387--67607	110	2.0	111	95	0	399	44	10	8	36	1.69
73336--73412	3	25.7	3	78	15	79	61	0	0	38	0.96
73546--73830	124	2.4	121	85	7	366	23	18	15	42	1.89
73777--73866	36	2.5	36	96	0	162	18	21	11	48	1.78
73807--73862	17	3.2	16	69	26	51	21	19	12	46	1.83
73921--74009	17	5.1	17	68	24	60	20	20	10	49	1.77
73921--74012	36	2.6	36	91	5	152	19	20	9	50	1.76
73759--74124	143	2.5	145	91	4	583	26	19	14	39	1.90
73953--74501	116	4.8	113	84	4	696	27	20	14	37	1.91
73953--74466	229	2.3	228	92	2	881	28	20	13	38	1.90
74906--74982	22	3.5	22	92	0	127	37	14	14	33	1.86
77418--77639	114	2.0	114	89	4	342	31	18	15	34	1.93
79883--79932	5	9.8	5	91	4	55	0	6	10	84	0.79
80238--80310	2	36.5	2	100	0	146	50	0	0	49	1.00
84515--84573	23	2.4	25	89	10	88	74	0	0	25	0.82
84515--84584	16	4.7	14	80	16	63	72	0	1	25	0.92
86707--86805	12	9.3	11	79	18	88	59	0	0	40	0.97
86707--86790	3	27.3	3	85	4	114	60	0	0	39	0.97
86936--87219	121	2.3	120	83	7	333	24	18	15	42	1.88
87166--87255	36	2.5	36	96	0	162	18	21	11	48	1.78
87196--87251	17	3.2	16	69	26	51	21	19	12	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87310--87398	17	5.1	17	70	24	69	20	20	8	50	1.74
87310--87401	36	2.6	36	89	5	143	19	20	8	51	1.73
87150--87477	143	2.3	143	92	1	548	26	17	14	40	1.88
87344--87847	224	2.2	225	91	3	829	28	19	13	38	1.90
88284--88360	22	3.5	22	89	0	118	38	12	14	33	1.84
93204--93248	10	4.4	10	81	15	56	0	4	6	88	0.61
93543--93580	2	19.5	2	94	5	69	50	0	0	50	1.00

Tables:   1

The End!