Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009102.1 Hibiscus syriacus cultivar Beakdansim tig00112562_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86726

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4912--4946
12
2.8
12
95
4
61
51
0
8
40
1.33
6895--6943
24
2.0
24
100
0
98
42
20
24
12
1.86
10795--10819
2
12.5
2
100
0
50
52
0
0
48
1.00
22555--22601
22
2.2
21
85
7
60
42
8
19
29
1.80
23442--23500
30
2.0
30
87
6
86
38
15
5
40
1.69
35195--35839
320
2.0
320
100
0
1290
23
29
19
28
1.98
37137--37179
17
2.5
17
100
0
86
20
23
4
51
1.66
42447--42526
35
2.3
35
88
0
124
43
23
1
31
1.62
42447--42542
35
2.7
35
82
3
113
42
28
1
28
1.62
43481--43558
35
2.2
35
88
4
113
34
0
20
44
1.52
44903--44979
30
2.6
30
85
6
104
40
1
19
38
1.60
53674--53725
28
2.0
28
81
11
65
75
5
9
9
1.20
57202--57320
53
2.2
53
86
2
159
26
23
13
36
1.92
59022--59055
2
17.0
2
100
0
68
0
50
0
50
1.00
60247--60271
9
2.8
9
100
0
50
12
0
0
88
0.53
60468--60518
17
3.1
16
77
11
50
23
33
25
17
1.96
65984--66042
30
2.0
28
83
6
73
20
3
6
69
1.26
67097--67137
17
2.4
17
88
8
57
7
4
4
82
0.93
69756--69835
39
2.1
39
88
4
117
30
27
21
21
1.98
76492--76625
71
1.9
72
82
4
173
60
10
17
11
1.58
77463--77737
80
3.3
80
64
27
194
32
25
17
24
1.97
77355--78133
170
4.7
170
92
5
1342
33
25
16
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77787--78090
152
2.0
152
97
0
572
34
25
14
25
1.94
85076--85149
11
6.9
11
76
21
61
74
1
2
21
1.02
85078--85141
8
7.6
8
75
16
58
75
1
3
20
1.03
85089--85149
5
12.6
5
80
16
67
75
0
3
21
0.94
85089--85149
9
6.3
10
80
14
67
75
0
3
21
0.94
85078--85147
18
4.1
17
85
10
90
75
1
2
20
1.00
85067--85148
34
2.5
33
84
7
96
74
1
4
19
1.07
86113--86655
81
6.6
84
76
10
505
24
19
25
30
1.98
86106--86521
84
5.1
80
77
10
371
24
20
24
29
1.99
86113--86627
164
3.1
162
84
6
637
24
19
25
29
1.98

Tables:   1

The End!