Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009105.1 Hibiscus syriacus cultivar Beakdansim tig00112570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137275

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
677--714
15
2.6
15
87
4
51
52
5
0
42
1.24
4667--4706
20
1.9
20
85
10
53
32
7
32
27
1.85
6040--6077
13
3.0
13
84
3
51
36
36
2
23
1.69
6099--6143
17
2.6
19
83
16
55
17
17
0
64
1.29
13318--13343
13
2.0
13
100
0
52
30
30
0
38
1.58
19610--19677
33
2.1
33
83
5
84
30
35
1
32
1.67
22092--22127
15
2.4
15
90
0
54
44
0
5
50
1.25
29382--29431
22
2.2
23
89
3
75
36
36
4
24
1.74
31138--31202
33
2.0
32
82
8
78
33
1
32
32
1.67
31196--31242
13
3.8
13
78
13
55
27
2
36
34
1.69
35226--35260
17
2.1
16
89
5
52
0
11
5
82
0.82
35606--35706
33
3.0
33
80
11
82
32
1
33
31
1.69
39514--39582
33
2.1
33
83
5
86
30
36
1
31
1.67
46053--46120
17
3.9
17
82
1
73
41
5
11
41
1.66
46883--46915
16
2.1
16
100
0
66
18
33
12
36
1.88
49726--49778
24
2.3
24
83
6
65
7
16
15
60
1.57
60578--60629
23
2.3
24
81
18
67
65
0
17
17
1.28
60578--60629
5
11.4
5
80
19
53
65
0
17
17
1.28
62015--62140
61
2.0
62
95
3
227
41
19
13
25
1.88
66570--66612
19
2.2
20
87
4
61
48
6
9
34
1.62
69979--70017
16
2.4
16
87
8
53
51
0
23
25
1.49
71843--71959
35
3.3
35
87
1
171
36
4
35
23
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74387--74480
47
2.0
47
91
0
152
29
28
20
21
1.98
75011--75035
5
5.0
5
100
0
50
60
0
20
20
1.37
77267--77318
21
2.5
21
96
0
95
55
0
28
15
1.40
77449--77485
14
2.5
15
87
12
51
2
16
2
78
0.98
82411--82464
19
2.9
18
84
13
65
5
14
5
74
1.19
82418--82473
19
2.8
20
79
15
62
1
16
5
76
1.05
85105--85203
30
3.3
30
97
1
180
48
13
21
17
1.80
90379--90429
19
2.6
20
90
3
77
43
5
15
35
1.71
92362--92391
15
2.0
15
100
0
60
13
26
46
13
1.80
108928--108969
6
6.7
6
86
8
57
78
4
16
0
0.91
112811--112859
26
2.0
26
84
8
66
12
14
8
65
1.47
125282--125349
26
2.6
26
85
0
91
29
14
35
20
1.93
128275--128318
23
1.9
23
90
9
72
4
13
18
63
1.46
129090--129147
26
2.2
26
96
0
107
27
18
34
18
1.95

Tables:   1

The End!