genome.fa.s9106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009106.1 Hibiscus syriacus cultivar Beakdansim tig00112571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61895

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922--954	12	2.8	12	95	0	57	27	27	9	36	1.87
14594--14952	153	2.3	153	87	3	522	15	27	15	40	1.88
15645--15989	78	4.4	78	87	0	465	23	28	15	32	1.95
16104--16698	198	2.9	202	89	3	901	19	19	22	37	1.94
23270--23298	14	2.0	15	93	6	51	13	13	13	58	1.63
25658--25763	31	3.4	31	75	8	99	12	27	33	27	1.92
26627--26714	46	1.9	46	88	0	131	45	14	22	17	1.85
30022--30058	13	2.8	13	95	0	65	35	0	13	51	1.41
33496--33571	36	2.1	36	97	0	143	43	14	10	31	1.79
38047--38076	15	2.0	15	100	0	60	13	46	26	13	1.80
38499--38577	36	2.2	36	97	0	149	43	15	10	31	1.80
41124--41215	42	2.2	41	92	3	150	43	2	3	51	1.30
41142--41213	15	5.1	14	73	11	67	41	1	2	54	1.23
47293--47358	10	6.6	10	75	13	64	16	19	34	28	1.94
47283--47332	9	5.4	9	79	11	57	16	22	32	30	1.95
47283--47343	19	3.3	18	86	6	77	16	21	31	31	1.95
47354--47411	17	3.4	17	95	0	98	17	39	24	18	1.92
54475--54551	9	8.1	9	79	11	82	15	24	31	28	1.96
54488--54551	28	2.2	28	89	8	94	15	25	31	28	1.96
54475--54549	19	3.9	19	84	7	89	16	22	32	29	1.95
54545--54602	17	3.4	17	97	0	107	17	41	24	17	1.90
54592--54629	7	5.6	7	93	6	69	15	31	28	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54592--54629	13	2.8	13	96	4	67	15	31	28	23	1.96
61708--61796	10	9.1	10	79	9	103	19	23	30	26	1.98
61708--61798	19	4.7	19	89	8	121	18	25	29	26	1.98
61792--61832	17	2.4	17	91	0	64	17	39	24	19	1.92
61822--61866	7	6.6	7	94	5	83	15	31	28	24	1.96
61822--61866	20	2.2	20	96	4	81	15	31	28	24	1.96

Tables:   1

The End!