genome.fa.s9107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009107.1 Hibiscus syriacus cultivar Beakdansim tig00112577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160446

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361--414	24	2.2	24	93	0	90	40	20	18	20	1.91
361--428	24	2.8	24	84	0	64	38	20	17	23	1.93
1287--1429	19	7.5	20	72	10	104	27	14	25	32	1.95
17143--17191	22	2.3	22	89	3	73	20	40	20	18	1.91
20804--20909	31	3.4	31	84	2	124	23	12	9	54	1.66
22577--22665	31	2.9	29	77	9	81	44	1	5	48	1.33
22592--22665	29	2.5	31	82	4	80	48	1	4	45	1.29
28730--28763	17	1.9	18	88	5	52	29	0	5	64	1.17
30069--30116	3	15.3	3	82	8	60	37	0	2	60	1.09
30513--30548	10	3.6	10	84	0	54	55	16	27	0	1.42
30560--30596	17	2.2	17	95	0	65	72	13	13	0	1.11
30858--30886	13	2.2	13	100	0	58	0	31	62	6	1.22
32299--32350	20	2.6	21	74	14	56	26	5	0	67	1.13
32847--32937	46	1.9	49	86	6	134	36	14	20	28	1.92
36731--36764	2	17.0	2	100	0	68	50	0	0	50	1.00
37068--37119	1	52.0	1	76	0	50	88	5	5	0	0.63
37087--37119	14	2.5	13	90	9	57	90	0	9	0	0.44
42331--43046	76	9.4	76	97	0	1317	21	21	21	35	1.96
42331--43046	229	3.1	228	97	0	1315	21	21	21	35	1.96
43178--43242	3	21.0	3	81	6	76	38	0	1	60	1.07
43639--43674	10	3.6	10	84	0	54	55	16	27	0	1.42
43686--43722	17	2.2	17	95	0	65	72	13	13	0	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43984--44035	13	4.0	13	100	0	104	0	30	61	7	1.24
46127--46170	3	14.7	3	95	0	79	34	29	34	2	1.70
46363--46391	13	2.2	13	100	0	58	20	0	6	72	1.07
46398--46491	38	2.7	32	73	20	89	26	7	7	58	1.52
49735--49782	22	2.1	22	84	7	60	56	14	0	29	1.39
49748--49794	22	2.1	22	92	0	76	48	10	2	38	1.50
51795--52036	80	3.0	81	88	6	348	45	11	2	40	1.55
53571--53611	20	2.0	20	85	0	55	36	9	0	53	1.34
59368--59415	21	2.3	21	85	0	60	25	39	12	22	1.89
59423--59505	21	3.9	22	93	3	118	19	34	25	20	1.96
60032--60128	32	3.0	35	73	17	91	55	4	2	38	1.31
60531--61155	128	4.9	128	96	1	1150	32	18	25	23	1.97
61226--61266	8	5.2	8	82	5	57	36	29	0	34	1.58
65233--65283	25	2.0	25	100	0	102	39	15	7	37	1.77
66033--66065	15	2.1	17	88	11	52	42	0	0	57	0.98
66887--66952	27	2.5	26	80	9	71	69	4	6	19	1.27
67704--67751	21	2.3	21	85	0	60	12	12	29	45	1.78
68284--68333	11	4.4	12	76	20	54	70	0	0	30	0.88
68332--68514	36	5.1	36	81	9	180	46	8	2	43	1.45
68410--68612	94	2.1	98	90	5	326	46	6	2	43	1.44
68480--68537	23	2.5	23	94	0	98	44	6	3	44	1.47
68503--68695	36	5.4	37	77	10	172	45	8	4	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68507--68707	109	1.8	109	83	8	266	44	8	3	43	1.51
77248--77316	23	3.0	23	76	0	75	28	23	27	20	1.99
82598--82666	23	3.0	23	76	0	57	30	21	26	21	1.99
83793--83836	23	1.9	23	86	9	63	31	15	11	40	1.83
89011--89048	20	1.9	20	100	0	76	36	10	28	23	1.88
89011--89061	20	2.8	18	88	11	61	39	9	27	23	1.86
90782--90871	3	31.0	3	76	16	75	27	0	2	70	1.00
92298--92346	23	2.1	23	84	3	62	42	2	0	55	1.11
103682--103735	10	5.7	10	70	12	51	83	0	14	1	0.73
103686--103741	7	7.7	7	83	15	69	83	0	14	1	0.72
103678--103735	20	2.8	20	84	7	73	81	0	17	1	0.78
103683--103741	27	2.1	28	87	9	86	84	0	13	1	0.69
104888--105520	83	7.6	83	98	0	1203	27	13	21	38	1.90
106260--106902	113	5.7	113	95	0	1058	38	14	19	27	1.91
106858--106919	19	3.3	18	70	17	54	41	12	24	20	1.87
106845--106924	38	2.1	39	92	2	135	42	12	23	21	1.87
106730--107106	154	2.5	147	88	6	564	40	12	19	27	1.87
107001--107089	36	2.5	36	94	0	151	48	10	21	20	1.78
107036--107318	124	2.3	122	84	6	351	42	15	18	24	1.88
107461--107549	3	30.0	3	75	15	78	28	0	2	69	1.00
107461--107547	18	4.5	21	75	17	89	27	0	2	70	1.00
108967--109015	23	2.1	23	84	3	62	42	2	0	55	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115314--115357	21	2.1	21	86	0	61	56	0	4	38	1.20
118425--118473	20	2.5	20	93	0	80	28	26	18	26	1.98
118821--118854	12	2.7	13	86	9	52	41	5	8	44	1.60
120613--120645	14	2.4	14	90	5	50	42	6	15	36	1.71
124470--124514	22	2.0	22	83	12	56	31	35	26	6	1.82
124926--124954	2	14.5	2	100	0	58	51	0	0	48	1.00
129217--129276	22	2.7	22	94	0	102	26	36	26	10	1.88
130888--130944	23	2.5	23	75	11	62	22	21	24	31	1.98
133844--133903	29	2.0	31	90	6	97	35	6	16	41	1.75
134055--134096	21	2.0	21	90	0	66	30	21	21	26	1.98
135308--135355	19	2.5	20	82	3	62	52	6	12	29	1.63
136605--136664	29	2.0	31	90	6	97	35	6	16	41	1.75
136730--136795	19	3.5	19	91	0	96	39	10	13	36	1.80
136951--136990	20	1.9	21	85	10	55	37	37	10	15	1.80
138477--138516	21	1.9	21	89	0	62	20	17	25	37	1.94
143974--144046	17	4.2	17	91	1	119	10	20	47	20	1.80
144058--144124	19	3.5	19	84	11	84	26	29	26	16	1.97
144057--144124	9	7.2	9	79	9	73	26	29	27	16	1.97
144069--144145	20	3.9	19	75	8	66	28	25	27	18	1.98
151346--151407	5	11.8	5	77	19	56	6	22	51	19	1.69
151327--151354	12	2.3	12	100	0	56	14	25	42	17	1.87
151334--151394	17	3.5	17	97	2	113	9	22	49	18	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151334--151407	18	4.2	18	94	1	116	8	22	50	18	1.74
151404--151443	19	2.2	18	86	4	53	25	27	32	15	1.95
153778--153937	59	2.7	59	76	12	141	45	4	17	33	1.68
154466--154513	22	2.2	22	81	7	53	45	8	0	45	1.33
160069--160170	24	4.3	24	80	9	113	20	9	17	51	1.73
160082--160168	12	7.3	12	70	7	70	18	10	18	52	1.72

Tables:   1

The End!