genome.fa.s9109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009109.1 Hibiscus syriacus cultivar Beakdansim tig00112579_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85113

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2528--2588	31	2.0	31	90	0	95	54	9	11	24	1.66
2744--2821	32	2.5	32	79	4	88	55	14	7	23	1.64
3195--3291	31	3.1	32	75	10	92	51	21	9	17	1.73
17945--17986	19	2.3	19	87	4	59	21	30	33	14	1.93
20244--20305	30	2.1	30	90	6	99	40	3	24	32	1.71
25034--25166	70	1.9	70	90	0	212	55	18	15	10	1.68
25296--25327	16	2.0	16	93	0	55	15	6	21	56	1.62
26437--26597	81	2.0	80	91	1	259	53	9	8	29	1.61
27339--27377	17	2.2	18	86	9	53	23	2	15	58	1.49
38019--38068	22	2.2	24	82	13	70	62	0	0	38	0.96
38022--38067	23	2.1	21	88	8	65	65	0	0	34	0.93
38488--38514	13	2.1	13	100	0	54	29	22	14	33	1.94
38548--38584	16	2.3	16	95	0	65	24	29	8	37	1.84
46768--46902	71	1.9	71	100	0	270	45	4	10	40	1.59
47017--47153	3	45.7	3	100	0	274	0	33	0	66	0.92
61985--62040	2	29.5	2	89	10	91	48	0	0	51	1.00
64116--64149	17	1.9	18	88	5	52	50	5	2	41	1.42
64775--64807	16	2.2	15	89	10	50	54	0	3	42	1.15
65202--65288	41	2.1	41	93	0	147	19	17	21	41	1.90
65202--65273	22	3.4	22	69	11	78	19	18	23	38	1.93
65366--65472	5	22.0	5	89	10	161	41	42	15	0	1.47
65366--65472	14	7.3	15	91	8	161	41	42	15	0	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65366--65472	19	5.5	19	92	7	164	41	42	15	0	1.47
65953--66071	5	22.0	5	86	8	130	0	19	45	35	1.51
65966--66073	6	19.5	6	88	11	153	0	17	47	35	1.48
65953--66071	11	11.0	11	86	11	142	0	19	45	35	1.51
66151--66217	22	3.2	22	64	12	59	44	20	16	17	1.86
66149--66235	41	2.1	41	93	0	147	41	24	17	17	1.90
66164--66235	22	3.4	21	73	11	76	38	26	18	16	1.91
66238--66345	20	5.3	20	75	4	108	39	24	20	15	1.91
66238--66366	41	3.1	41	96	0	240	37	24	19	17	1.93
66252--66384	21	6.4	21	79	3	153	35	26	17	21	1.95
67026--67077	27	2.0	27	88	3	79	32	19	13	34	1.90
67127--67339	36	5.9	36	88	4	322	18	24	21	35	1.95
67127--67344	72	3.0	72	95	0	382	17	24	20	36	1.94
76457--76825	20	18.5	20	85	4	458	34	26	18	20	1.96
77497--77543	24	2.0	24	87	8	69	25	14	21	38	1.92
77718--77742	12	2.1	12	100	0	50	72	0	28	0	0.86
80044--80369	19	18.4	19	80	15	405	47	17	20	14	1.83
80044--80369	33	9.2	34	82	13	321	47	17	20	14	1.83
80072--80391	161	2.0	157	93	3	543	46	16	21	15	1.83
80072--80391	52	6.0	52	92	4	541	46	16	21	15	1.83
80398--80497	18	5.6	18	86	11	136	15	24	18	43	1.87
80604--80640	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80635--80707	12	6.0	12	67	20	53	57	16	1	24	1.47
80621--80693	38	1.9	38	97	0	137	53	16	1	28	1.51
82505--82639	19	7.6	19	76	16	137	45	24	19	10	1.81
82561--82617	14	3.7	14	77	20	60	45	24	21	8	1.80
82542--82634	33	2.8	33	98	0	177	47	22	20	9	1.79
82505--82639	52	2.5	54	75	18	131	45	24	19	10	1.81
82635--82763	19	7.3	19	75	17	125	8	17	28	45	1.77
82635--82726	33	2.8	33	93	3	150	7	18	28	45	1.76
82807--83186	93	4.1	93	98	0	744	46	18	12	22	1.83
82807--83186	185	2.0	186	98	0	744	46	18	12	22	1.83
84889--84943	14	3.6	14	78	21	65	41	23	25	9	1.83
84881--84996	33	3.5	33	88	2	187	44	18	25	11	1.83
84883--85001	14	7.1	17	66	25	58	43	19	25	11	1.84

Tables:   1

The End!