genome.fa.s9111.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009111.1 Hibiscus syriacus cultivar Beakdansim tig00112585_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76234

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1392--1461	20	3.5	20	88	0	95	45	17	15	21	1.85
1561--1616	20	2.8	20	81	2	60	35	19	7	37	1.79
2386--2419	12	2.8	12	90	0	50	55	29	0	14	1.40
4858--4893	18	2.0	18	88	0	54	55	22	2	19	1.56
6784--6899	21	5.7	20	76	5	97	23	18	34	24	1.96
6784--6902	41	2.9	41	83	1	139	24	18	33	23	1.97
7217--7291	21	3.6	21	71	12	64	32	37	10	20	1.87
7473--7569	42	2.3	42	81	0	113	19	16	35	28	1.94
9009--9055	20	2.3	20	96	0	85	10	17	23	48	1.77
9548--9585	20	2.0	20	84	5	51	50	10	13	26	1.73
9592--9634	20	2.2	20	95	0	77	16	11	25	46	1.80
9631--9738	20	5.3	20	71	6	83	24	15	19	40	1.90
10355--10399	3	15.0	3	100	0	90	66	0	33	0	0.92
10961--10999	2	19.5	2	100	0	78	48	0	0	51	1.00
12142--12291	41	3.6	40	89	5	176	48	7	18	26	1.74
12161--12509	130	2.7	130	80	6	365	45	8	20	25	1.79
12141--12517	86	4.4	85	75	9	304	45	8	20	24	1.78
12152--12517	44	8.5	43	81	6	334	44	8	21	25	1.80
12553--12829	43	6.5	42	69	11	156	50	7	14	27	1.70
12551--12735	41	4.4	43	70	14	118	49	7	15	27	1.72
13423--13515	27	3.1	27	77	21	105	29	11	3	55	1.51
13428--13504	35	2.2	35	100	0	154	28	7	2	61	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13455--13479	4	6.2	4	100	0	50	28	0	0	72	0.86
13928--13988	29	2.1	29	93	0	104	45	6	4	42	1.51
14198--14240	23	2.0	21	86	9	59	48	16	0	34	1.46
16179--16217	19	2.1	19	100	0	78	51	5	5	38	1.46
16230--16264	18	1.9	18	88	0	52	28	22	20	28	1.98
16248--16649	44	9.0	44	76	13	351	47	7	20	23	1.77
16253--16630	86	4.2	87	76	13	379	46	8	21	23	1.78
16473--16649	42	4.1	43	80	16	183	50	7	17	23	1.72
16448--16649	87	2.3	86	84	10	241	51	6	18	23	1.70
16486--16763	87	3.3	85	78	10	241	50	7	15	26	1.70
16574--16764	43	4.5	42	72	11	133	53	7	11	27	1.63
18034--18086	27	2.0	27	100	0	106	30	15	1	52	1.53
18480--18536	29	2.0	29	92	0	96	49	7	1	42	1.40
19486--19613	68	1.9	68	91	0	211	39	7	15	37	1.77
19629--19685	29	1.9	29	85	3	78	43	12	7	36	1.69
19627--19935	132	2.3	127	77	9	323	42	11	10	35	1.76
19872--19935	29	2.2	29	91	0	101	45	12	9	32	1.74
25280--25315	18	2.0	18	88	0	54	55	0	0	44	0.99
26827--26866	12	3.6	11	86	6	55	47	0	0	52	1.00
26856--26990	22	6.1	22	80	13	161	41	0	9	48	1.41
26856--26990	44	3.1	44	84	6	184	41	0	9	48	1.41
26850--26981	66	2.0	67	95	4	241	44	0	9	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28006--28150	22	6.6	22	91	0	245	40	0	11	48	1.44
28174--28232	31	1.9	31	89	0	91	45	6	5	42	1.52
30602--35274	931	5.0	936	93	2	7905	38	14	13	33	1.86
35296--35336	3	14.0	3	89	5	66	29	0	2	68	1.03
36060--36109	22	2.2	23	82	10	59	24	18	38	20	1.93
36404--36457	2	27.0	2	100	0	108	50	0	0	50	1.00
36708--36840	67	2.0	67	96	0	248	36	6	0	56	1.31
38192--38220	2	14.5	2	100	0	58	51	0	0	48	1.00
38745--38772	12	2.3	12	100	0	56	57	32	0	10	1.33
38899--38945	24	2.0	24	82	0	58	31	19	14	34	1.92
39132--39156	12	2.1	12	100	0	50	72	0	28	0	0.86
41218--41253	18	2.0	18	94	0	63	55	25	2	16	1.55
41539--41578	20	2.0	20	95	0	71	40	22	20	17	1.92
43014--43111	21	4.7	21	76	7	101	22	20	33	23	1.97
43014--43111	41	2.4	42	77	8	110	22	20	33	23	1.97
43255--43300	4	11.5	4	80	0	56	67	4	2	26	1.21
45739--45787	20	2.5	20	93	0	89	18	18	22	40	1.91
45739--45795	20	2.8	20	82	15	73	15	17	24	42	1.88
45989--46020	9	3.6	9	95	0	55	18	25	0	56	1.42
46471--46638	84	2.0	84	94	2	293	33	24	8	33	1.86
48372--48401	12	2.5	12	100	0	60	53	16	0	30	1.44
53905--54273	20	18.5	20	85	4	458	34	26	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54947--54993	24	2.0	24	87	8	69	25	14	21	38	1.92
55167--55191	12	2.1	12	100	0	50	72	0	28	0	0.86
57497--57821	33	9.2	34	82	13	319	47	17	20	14	1.83
57525--57844	161	2.0	157	93	3	543	46	16	21	15	1.83
57497--57844	19	19.8	19	79	17	405	46	17	20	14	1.84
57525--57844	52	6.0	52	93	4	541	46	16	21	15	1.83
57851--57951	19	5.6	19	85	12	142	14	23	17	43	1.87
57851--57951	33	2.8	37	78	18	140	14	23	17	43	1.87
58058--58094	14	2.6	14	91	0	65	45	21	0	32	1.52
58089--58161	12	6.0	12	67	20	53	57	16	1	24	1.47
58075--58147	38	1.9	38	97	0	137	53	16	1	28	1.51
59963--60097	19	7.6	19	76	16	137	45	24	19	10	1.81
60019--60075	14	3.7	14	77	20	60	45	24	21	8	1.80
60000--60092	33	2.8	33	98	0	177	47	22	20	9	1.79
59963--60097	52	2.5	54	75	18	131	45	24	19	10	1.81
60093--60221	19	7.3	19	75	17	125	8	17	28	45	1.77
60093--60184	33	2.8	33	93	3	150	7	18	28	45	1.76
60264--60641	93	4.1	93	97	2	726	46	18	12	22	1.83
60264--60641	183	2.0	186	97	1	726	46	18	12	22	1.83
62341--62430	14	5.7	14	74	23	81	42	23	25	8	1.83
62333--62447	33	3.5	33	95	0	212	45	20	24	9	1.81
62340--62452	19	6.8	18	72	23	88	43	22	24	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62464--62518	14	3.6	14	73	21	56	9	27	23	40	1.85
62639--62709	33	2.2	33	92	0	115	47	18	22	11	1.80
62891--62945	22	2.5	22	81	0	74	20	16	40	23	1.91
63091--63284	20	9.6	20	82	5	221	19	19	25	35	1.95
63091--63284	60	3.2	60	83	0	253	19	19	25	35	1.95
63277--63353	21	3.7	20	70	13	57	27	16	23	32	1.96
63339--63390	20	2.6	20	96	0	95	21	13	26	38	1.90
64152--64198	22	2.1	23	84	4	60	42	2	0	55	1.12
64146--64225	32	2.5	32	78	14	83	46	2	0	51	1.14
64188--64238	23	2.2	23	86	6	68	54	1	0	43	1.11
64173--64261	29	3.2	29	73	12	78	50	1	0	48	1.08
64224--64314	45	2.0	44	84	16	116	49	0	1	49	1.08
64164--64339	27	6.8	26	68	21	88	49	0	1	48	1.12
64278--64352	27	2.8	28	76	17	77	48	0	2	49	1.15
64458--64526	31	2.2	33	84	10	90	50	2	0	46	1.16
74401--74427	12	2.2	12	100	0	54	37	33	7	22	1.82

Tables:   1

The End!