Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009112.1 Hibiscus syriacus cultivar Beakdansim tig00112593_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40861

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2112
742
2.8
743
99
0
4163
30
16
16
35
1.92
6896--7002
36
3.0
36
87
0
151
33
11
13
42
1.79
17740--17795
14
4.1
14
78
21
66
16
14
16
53
1.73
17741--17796
24
2.2
26
90
9
98
17
12
16
53
1.73
18063--18112
13
4.1
13
77
15
61
18
8
12
62
1.53
18059--18115
23
2.5
23
100
0
114
15
8
14
61
1.56
19460--19516
25
2.3
25
81
6
62
38
1
12
47
1.51
28721--28779
25
2.4
25
91
0
91
45
6
3
44
1.47
29377--29424
23
2.1
23
88
0
69
35
12
18
33
1.89
30152--30188
18
2.1
18
89
0
56
51
10
5
32
1.60
30392--30456
23
2.8
23
90
0
94
38
18
7
35
1.80
30807--30860
23
2.5
20
75
18
54
42
18
1
37
1.61
30822--30884
23
2.7
23
90
0
90
38
19
6
36
1.77
30394--31412
429
2.4
428
98
0
1988
38
13
8
40
1.74
31236--31289
23
2.5
20
75
18
54
42
18
1
37
1.61
31251--31313
23
2.7
23
90
0
90
38
19
6
36
1.77
33871--34724
184
4.7
184
97
0
1604
34
15
14
35
1.89
36192--36278
3
29.0
3
77
0
84
24
34
5
35
1.79
36192--36293
18
5.7
18
79
0
87
22
34
6
36
1.81
36200--36290
42
2.2
42
91
0
146
21
35
7
35
1.83
37746--39752
200
10.1
199
96
2
3627
32
15
15
37
1.88
39834--39877
18
2.4
19
84
7
63
56
9
2
31
1.43

Tables:   1

The End!