genome.fa.s9119.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009119.1 Hibiscus syriacus cultivar Beakdansim tig00112608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96278

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5042--5072	15	2.1	15	93	0	53	54	0	0	45	0.99
9969--10041	37	1.9	38	81	8	87	46	4	10	38	1.58
9979--10098	50	2.4	50	80	4	134	45	5	11	36	1.65
9945--10114	87	2.0	87	83	9	222	46	4	10	38	1.58
10082--10128	23	2.0	25	83	8	62	46	4	6	42	1.48
10045--10166	62	2.0	60	85	6	165	47	4	8	39	1.55
10157--10213	22	2.5	23	75	18	64	43	1	5	49	1.35
10248--10318	7	9.2	8	74	22	55	35	0	1	63	1.03
10259--10307	10	4.7	11	76	21	52	34	0	2	63	1.06
10270--10328	29	2.1	29	87	9	86	30	0	0	69	0.89
10279--10328	14	3.6	14	84	7	66	30	0	0	70	0.88
13297--13354	22	2.6	22	97	0	107	39	12	22	25	1.89
13292--13362	22	3.2	21	77	20	74	42	11	23	22	1.86
14082--14172	23	4.0	23	85	0	128	28	17	24	29	1.97
16976--17048	24	3.0	24	84	4	76	36	24	15	23	1.93
20447--20481	18	1.9	18	94	0	61	54	14	22	8	1.67
22409--22800	54	7.3	54	87	5	569	26	17	20	34	1.95
26142--26223	21	3.8	21	77	3	74	39	28	13	19	1.89
26265--26327	21	3.0	20	72	9	63	31	19	20	28	1.97
30580--30734	21	7.3	21	76	5	96	38	25	12	23	1.90
30573--30734	65	2.5	65	78	2	166	40	24	11	24	1.88
30652--30738	42	2.1	42	86	0	120	41	20	14	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34171--34339	37	4.6	37	86	7	206	44	7	13	34	1.71
34301--34327	13	2.1	13	100	0	54	44	7	7	40	1.60
34151--34397	73	3.4	71	82	7	275	43	6	12	37	1.68
34168--34382	110	2.0	109	81	9	260	43	6	13	36	1.69
34282--34397	36	3.2	35	78	16	96	45	5	11	37	1.62
34425--34479	22	2.5	23	82	11	71	45	0	9	45	1.35
34409--34438	2	15.0	2	100	0	60	50	0	0	50	1.00
34447--34512	29	2.2	29	86	5	87	42	0	9	48	1.35
34514--34594	16	5.3	15	73	26	64	33	1	0	65	1.01
34506--34596	46	2.0	46	89	8	141	32	1	1	64	1.08
34512--34595	30	2.8	29	81	13	91	33	1	0	65	1.00
35700--35759	29	2.1	29	87	6	86	26	10	3	60	1.45
35769--35816	18	2.8	17	87	9	71	29	2	0	68	1.01
41612--41735	65	1.9	64	82	9	153	28	4	8	59	1.44
42166--42301	5	27.2	5	87	0	173	22	13	20	43	1.86
44586--44660	37	2.0	37	100	0	150	28	10	21	40	1.86
45205--45245	22	1.9	21	90	5	64	29	21	24	24	1.99
46767--46818	18	2.9	18	88	5	79	19	23	30	26	1.98
56970--57047	24	3.2	24	64	10	61	52	14	8	24	1.69
58072--58268	55	3.6	54	90	2	304	31	18	20	28	1.96
64824--64878	20	2.8	20	94	0	92	25	16	29	29	1.97
64844--65036	55	3.6	55	87	2	268	29	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65384--65433	21	2.4	21	82	0	55	40	8	24	28	1.83
65584--65667	23	3.9	22	75	21	70	26	22	22	28	1.99
67044--67127	23	3.7	23	78	0	96	28	21	25	25	1.99
67091--67136	23	2.0	23	91	0	74	26	21	26	26	2.00
68762--68816	22	2.7	20	77	5	56	29	20	10	40	1.86
69122--69165	20	2.1	21	83	4	54	45	29	2	22	1.65
71303--71336	6	5.7	6	100	0	68	17	0	67	14	1.23
71303--71343	18	2.3	18	91	0	64	19	2	65	12	1.36
73834--73858	13	1.9	13	100	0	50	28	24	16	32	1.96
81516--81568	19	2.8	19	72	11	54	26	5	1	66	1.25
81816--81860	19	2.3	20	81	11	58	64	2	0	33	1.06
83455--83497	21	2.0	21	100	0	86	48	4	9	37	1.56
87989--88017	4	7.2	4	100	0	58	24	0	24	51	1.48

Tables:   1

The End!