genome.fa.s9122.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009122.1 Hibiscus syriacus cultivar Beakdansim tig00112612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94956

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654--697	23	1.9	23	86	9	63	34	11	15	38	1.84
2046--2083	17	2.4	17	91	8	62	0	10	7	81	0.87
2463--2512	25	2.0	25	88	0	73	46	0	30	24	1.53
9891--9940	20	2.5	20	93	0	82	34	8	32	26	1.85
12055--12088	12	2.9	12	86	4	52	35	0	38	26	1.57
14572--14628	24	2.4	24	93	0	96	7	12	10	70	1.34
16857--16904	23	2.0	23	84	4	60	35	16	12	35	1.87
18355--18406	21	2.6	21	90	6	81	32	13	7	46	1.72
23992--24021	13	2.4	13	94	5	53	26	30	0	43	1.55
26702--26734	14	2.4	14	90	10	50	0	21	0	78	0.75
38439--38512	14	5.7	13	81	13	82	4	10	2	82	0.90
38439--38506	22	3.4	21	78	15	65	4	10	2	82	0.92
38482--38514	16	2.1	16	100	0	66	0	6	6	87	0.65
38451--38512	22	2.8	23	81	13	69	3	9	3	83	0.86
39688--39750	17	3.6	18	75	12	69	4	12	4	77	1.08
40924--40986	17	3.6	18	75	12	69	4	12	4	77	1.08
42160--42234	18	3.7	21	79	13	70	4	12	2	81	0.93
42160--42235	14	5.7	13	80	18	77	3	11	2	81	0.93
42172--42237	18	3.7	18	78	13	73	3	10	4	81	0.94
43410--43472	17	3.6	18	75	12	69	4	12	4	77	1.08
44644--44681	14	2.5	15	83	8	51	5	15	0	78	0.91
44656--44697	22	1.9	22	85	0	57	7	11	2	78	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44663--44713	23	2.2	23	82	6	59	11	11	5	70	1.32
45889--45934	22	2.1	23	84	8	60	8	10	2	78	1.05
45903--45946	22	2.0	22	86	4	61	11	11	4	72	1.25
45898--45946	22	2.2	21	79	10	53	12	12	4	71	1.28
47129--47179	23	2.2	23	82	6	59	13	9	3	72	1.24
48369--48413	23	1.9	23	86	4	63	11	11	4	73	1.23
49592--49642	23	2.2	23	82	6	59	13	9	3	72	1.24
50804--50877	8	9.1	8	69	19	55	2	12	2	82	0.88
50799--50871	21	3.7	20	77	17	64	4	13	2	79	0.99
50804--50877	13	5.7	13	80	13	82	2	12	2	82	0.88
50804--50876	22	3.4	22	84	7	96	2	12	2	82	0.89
50804--50859	27	2.1	26	87	9	78	3	12	1	82	0.88
50804--50870	27	2.4	28	83	14	77	2	11	2	82	0.90
50811--50879	17	3.9	18	80	14	74	2	11	4	81	0.95
52053--52126	8	9.1	8	69	19	55	2	12	2	82	0.88
52048--52120	21	3.7	20	77	17	64	4	13	2	79	0.99
52053--52126	13	5.7	13	80	13	82	2	12	2	82	0.88
52053--52125	22	3.4	22	84	7	96	2	12	2	82	0.89
52053--52108	27	2.1	26	87	9	78	3	12	1	82	0.88
52053--52119	27	2.4	28	83	14	77	2	11	2	82	0.90
52060--52128	17	3.9	18	80	14	74	2	11	4	81	0.95
53313--53375	22	2.9	21	77	15	65	4	14	3	77	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53307--53378	18	3.9	18	72	7	65	5	13	4	76	1.12
53528--54677	573	2.0	573	98	0	2201	40	11	21	26	1.87
55146--55193	22	2.2	22	85	7	62	10	12	4	72	1.24
56369--56463	20	4.8	20	80	18	103	3	10	4	82	0.93
56378--56461	37	2.2	38	95	4	152	2	10	4	82	0.92
56614--59567	573	5.0	573	71	14	2649	37	12	21	29	1.90
58211--58264	22	2.5	22	85	8	67	5	12	1	79	0.98
58211--58266	13	4.2	13	82	10	69	5	12	1	80	0.96
58223--58267	22	2.1	22	91	4	74	4	11	2	82	0.91
60015--60054	13	3.0	13	89	7	62	5	15	0	80	0.88
60034--60084	23	2.2	23	82	6	59	11	13	3	70	1.29
68920--68967	26	1.9	25	87	8	71	20	20	22	35	1.96
72804--72832	15	2.0	15	93	6	51	0	20	3	75	0.94
72954--73002	24	2.0	25	92	8	82	18	22	24	34	1.96
77244--77312	33	2.1	33	83	5	86	31	1	36	30	1.67
77298--77394	13	8.0	12	72	22	62	28	3	37	30	1.73
77283--77395	36	3.2	36	92	1	174	27	3	36	32	1.74

Tables:   1

The End!