genome.fa.s9123.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009123.1 Hibiscus syriacus cultivar Beakdansim tig00112613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56522

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7593--7621	15	2.0	15	93	6	51	0	20	3	75	0.94
7615--7670	23	2.4	23	85	8	69	7	16	14	62	1.52
7741--7789	24	2.0	25	92	8	82	18	22	24	34	1.96
12050--12118	33	2.1	33	83	5	86	31	1	36	30	1.67
12104--12200	13	8.0	12	72	22	62	28	3	37	30	1.73
12089--12201	36	3.2	36	92	1	174	27	3	36	32	1.74
31973--32082	13	9.0	13	71	20	53	31	2	36	29	1.72
31960--32066	36	3.0	36	94	1	189	29	3	37	28	1.75
33542--33584	23	1.9	23	86	13	63	60	2	9	27	1.40
37167--37213	16	2.8	16	81	12	51	68	0	17	14	1.22
37813--37864	22	2.3	23	90	3	79	28	1	34	34	1.69
37833--37902	35	2.0	36	94	2	124	28	2	37	31	1.72
37892--37916	13	1.9	13	100	0	50	32	0	44	24	1.54
38318--38368	19	2.6	20	87	3	68	45	5	15	33	1.71
41968--42019	22	2.3	23	90	3	79	28	1	34	34	1.69
41985--42056	11	6.2	11	75	22	67	27	2	34	34	1.72
41970--42049	36	2.2	37	78	17	96	30	3	32	33	1.75
41987--42069	36	2.3	36	89	0	130	28	2	36	32	1.70
42048--42072	13	1.9	13	100	0	50	32	0	44	24	1.54
42475--42525	19	2.6	20	87	3	68	45	5	15	33	1.71
46136--46187	22	2.3	23	90	3	79	28	1	34	34	1.69
46153--46205	11	4.5	11	78	21	63	28	1	33	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46156--46226	36	2.0	36	94	0	124	28	2	35	33	1.72
46160--46237	36	2.2	36	88	0	111	29	2	35	32	1.71
46219--46252	12	2.8	12	90	4	50	41	0	35	23	1.55
46640--46690	19	2.6	20	87	3	68	45	5	13	35	1.68
49892--49919	11	2.5	11	100	0	56	0	17	0	82	0.68
50319--50430	13	9.2	13	71	20	57	32	2	35	29	1.72
50300--50414	36	3.2	36	93	1	196	28	3	37	30	1.74
50300--50439	72	2.0	71	84	4	183	30	2	36	30	1.72
54787--54832	24	2.0	23	86	4	65	65	8	10	15	1.47

Tables:   1

The End!