genome.fa.s9125.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009125.1 Hibiscus syriacus cultivar Beakdansim tig00112616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108628

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553--602	13	3.7	13	86	5	64	2	12	0	86	0.67
549--606	23	2.8	21	69	23	50	3	13	0	82	0.79
17673--17718	22	2.0	22	87	4	65	43	0	0	56	0.99
26159--26219	13	4.8	13	75	15	56	57	4	0	37	1.20
26159--26236	38	2.1	38	88	9	115	53	6	0	39	1.26
26159--26226	19	3.5	19	75	13	68	57	4	0	38	1.19
26172--26223	13	4.0	14	78	14	58	53	3	0	42	1.19
28253--28349	48	2.0	48	100	0	194	32	10	24	31	1.89
29988--30056	35	2.0	35	91	0	111	37	24	1	36	1.65
30455--30702	130	1.9	130	94	0	433	36	15	12	35	1.85
30629--30675	23	2.1	21	84	7	58	31	14	19	34	1.92
30469--30733	130	2.0	129	82	4	318	40	13	12	33	1.83
31174--31206	16	1.9	18	88	11	52	60	9	3	27	1.42
32032--32325	154	1.9	152	85	4	403	34	11	10	43	1.75
32308--32406	51	1.9	51	91	0	162	39	11	9	40	1.72
32468--32692	77	2.9	76	81	6	267	36	15	11	37	1.83
42451--42517	33	2.0	33	91	0	107	34	7	13	44	1.72
63592--63635	19	2.2	20	80	11	56	59	9	4	27	1.48
72652--72698	15	3.1	16	78	9	53	31	2	61	4	1.27
72811--72879	29	2.3	29	90	2	102	34	14	14	36	1.87
73100--73140	20	2.1	20	86	4	57	31	2	17	48	1.60
78903--78966	30	2.1	30	100	0	128	48	3	15	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79314--79682	20	18.5	20	85	4	458	34	26	18	20	1.96
80356--80402	24	2.0	24	87	8	69	25	14	21	38	1.92
82905--83211	19	17.4	19	78	16	349	47	18	20	14	1.83
82905--83233	33	9.5	33	75	19	225	46	18	20	14	1.83
82933--83211	52	5.2	53	89	7	342	47	17	20	14	1.83
82975--83211	71	3.3	71	83	11	349	47	17	20	14	1.83
82905--83243	142	2.4	137	89	6	488	46	18	20	14	1.83
82905--83249	71	4.9	71	75	15	292	46	18	20	15	1.84
83240--83341	19	5.6	19	85	12	151	14	23	17	44	1.86
83448--83484	14	2.6	14	91	0	65	45	21	0	32	1.52
83479--83551	12	6.0	12	67	20	53	57	16	1	24	1.47
83465--83537	38	1.9	38	97	0	137	53	16	1	28	1.51
85411--85467	14	3.7	14	77	20	60	45	22	21	10	1.82
85392--85484	33	2.8	33	95	0	168	47	21	20	10	1.80
85355--85489	19	7.6	19	76	16	128	45	23	19	11	1.82
85485--85613	19	7.3	19	75	17	125	8	17	28	45	1.77
85485--85576	33	2.8	33	93	3	150	7	18	28	45	1.76
85657--86036	93	4.1	93	99	0	753	46	18	12	22	1.83
85657--86036	185	2.0	186	99	0	753	46	18	12	22	1.83
87742--87831	14	5.7	14	72	23	72	42	23	24	10	1.84
87734--87848	33	3.5	33	92	0	203	45	20	23	10	1.82
87737--87853	19	6.9	19	69	24	84	43	21	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87865--87919	14	3.6	14	73	21	56	9	27	23	40	1.85
88040--88110	33	2.2	33	92	0	115	47	18	22	11	1.80
88292--88346	22	2.5	22	81	0	74	20	16	40	23	1.91
88491--88684	20	9.6	20	82	5	221	19	19	25	35	1.95
88491--88684	60	3.2	60	83	0	253	19	19	25	35	1.95
88677--88753	21	3.7	20	70	13	57	27	16	23	32	1.96
88739--88790	20	2.6	20	96	0	95	21	13	26	38	1.90
89719--89783	30	2.2	30	88	0	94	18	27	29	24	1.98
92765--92827	29	2.1	30	94	2	110	47	3	15	33	1.62
93738--93832	30	3.2	30	83	0	100	16	29	32	21	1.95
101115--101202	26	3.4	26	100	0	176	39	6	9	44	1.63

Tables:   1

The End!