genome.fa.s9127.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009127.1 Hibiscus syriacus cultivar Beakdansim tig00112623_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64136

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3652--3691	6	6.7	6	83	11	55	80	0	20	0	0.72
8584--8626	20	2.2	20	95	4	79	37	11	4	46	1.61
13031--13077	17	2.6	19	78	18	55	0	17	6	76	0.98
13410--13514	33	3.1	34	80	12	92	33	1	34	30	1.69
13454--13566	36	3.2	36	91	1	165	28	3	36	31	1.74
19198--19266	33	2.1	33	83	5	86	31	1	36	30	1.67
19252--19348	13	8.0	12	70	23	62	29	2	37	30	1.69
19250--19349	36	2.8	36	92	1	157	30	2	37	31	1.69
22806--22847	20	2.1	21	86	8	61	0	14	4	80	0.86
23190--23258	33	2.1	33	83	5	86	31	1	36	30	1.67
23244--23340	13	8.0	12	72	22	62	28	3	37	30	1.73
23229--23341	36	3.2	36	92	1	174	27	3	36	32	1.74
24885--24997	36	3.2	35	88	6	156	31	34	3	30	1.75
30481--30545	33	2.0	32	82	8	78	32	32	1	33	1.67
33567--33622	25	2.3	25	81	6	62	58	14	14	12	1.63
36522--36572	20	2.6	20	90	3	77	35	15	5	43	1.71
36986--37025	19	2.1	19	85	4	53	20	12	0	67	1.22
40955--41051	13	8.0	12	72	22	62	28	3	37	30	1.73
40940--41052	36	3.2	36	91	1	165	28	3	35	32	1.74
42082--42123	22	1.9	22	85	0	57	42	21	0	35	1.53
50534--50598	17	4.1	16	78	11	62	0	13	6	80	0.90
50532--50595	20	3.0	21	84	9	67	0	15	4	79	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50534--50586	10	4.9	10	86	9	61	0	15	1	83	0.74
50936--51004	33	2.1	33	83	5	86	31	1	36	30	1.67
50990--51086	13	8.0	12	72	22	62	28	3	37	30	1.73
50975--51087	36	3.2	36	92	1	174	27	3	36	32	1.74
52554--52599	20	2.4	20	85	7	60	39	13	4	43	1.63
52562--52603	20	2.2	20	91	4	68	40	11	2	45	1.54
56209--56261	21	2.6	21	87	3	72	35	13	7	43	1.72
60264--60311	19	2.5	20	90	10	73	33	12	8	45	1.72
63067--63116	22	2.3	23	90	10	79	28	6	34	32	1.81

Tables:   1

The End!