Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009128.1 Hibiscus syriacus cultivar Beakdansim tig00112624_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62813
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Found at i:2770 original size:33 final size:32
Alignment explanation
Indices: 2733--2797 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 32
2723 ATATTCCTTC
*
2733 ACCATATCA-CGCCAATAACATCATCCTTTCATT
1 ACCATATCATCACCAATAA-ATCATCC-TTCATT
* *
2766 ACCATTTCATCACCATTAAATCATCCTTCATT
1 ACCATATCATCACCAATAAATCATCCTTCATT
2798 CATCAACAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 6 0.21
33 15 0.54
34 7 0.25
ACGTcount: A:0.32, C:0.32, G:0.02, T:0.34
Consensus pattern (32 bp):
ACCATATCATCACCAATAAATCATCCTTCATT
Found at i:5851 original size:25 final size:25
Alignment explanation
Indices: 5819--5874 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
5809 AAAAATGAGA
* *
5819 AAAG-AAATTGAAGCACTCCAAAAG
1 AAAGAAAATTCAAGCACTCAAAAAG
* *
5843 AAAGAAAATTCCAGTACTCAAAAAG
1 AAAGAAAATTCAAGCACTCAAAAAG
5868 -AAGAAAA
1 AAAGAAAA
5875 AAACAAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.12
Consensus pattern (25 bp):
AAAGAAAATTCAAGCACTCAAAAAG
Found at i:8796 original size:19 final size:20
Alignment explanation
Indices: 8772--8822 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
8762 CGTCCAAGAG
* *
8772 CATGTATCTTCAT-TAAAAT
1 CATGTATTTTCATCAAAAAT
8791 CATGTATTTTCATCAAAAAT
1 CATGTATTTTCATCAAAAAT
8811 CATGTATTTTCA
1 CATGTATTTTCA
8823 AAGGGGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (20 bp):
CATGTATTTTCATCAAAAAT
Found at i:9272 original size:19 final size:19
Alignment explanation
Indices: 9230--9269 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9220 TATCCCATCC
*
9230 TTATTTCATTTCATTTTTA
1 TTATTTCATTTCATTCTTA
*
9249 TTATTTCTTTTCATTACTTA
1 TTATTTCATTTCATT-CTTA
9269 T
1 T
9270 ATTATTATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTCATTTCATTCTTA
Found at i:13194 original size:33 final size:33
Alignment explanation
Indices: 13152--13220 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
13142 TTTGATGAAT
*
13152 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGG-CATGAAATGGTAATG
* * *
13185 GAAGGATGATGTTATTGGCATGATATGGTGATG
1 GAAGGATGATGTTAATGGCATGAAATGGTAATG
13218 GAA
1 GAA
13221 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 25 0.81
34 6 0.19
ACGTcount: A:0.33, C:0.01, G:0.35, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCATGAAATGGTAATG
Found at i:13225 original size:13 final size:12
Alignment explanation
Indices: 13206--13302 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
13196 TTATTGGCAT
13206 GATATGGTGATG
1 GATATGGTGATG
13218 GAATATGGTGAT-
1 G-ATATGGTGATG
*
13230 GATATAGGCG-T-
1 GATAT-GGTGATG
13241 GATAATGGTGATG
1 GAT-ATGGTGATG
13254 GACTATGGTGAT-
1 GA-TATGGTGATG
*
13266 GATATAGGCG-T-
1 GATAT-GGTGATG
*
13277 GATAATGGAGATG
1 GAT-ATGGTGATG
13290 GATTATGGTGATG
1 GA-TATGGTGATG
13303 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:13254 original size:36 final size:36
Alignment explanation
Indices: 13191--13303 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
13181 AATGGAAGGA
* * *
13191 TGATGTTATTGGCATGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
13226 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
13262 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
13298 TGATGA
1 TGATGA
13304 AAATAGTATC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
35 15 0.21
36 56 0.79
ACGTcount: A:0.28, C:0.04, G:0.35, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:14373 original size:22 final size:22
Alignment explanation
Indices: 14333--14374 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14323 AAATATGTGG
* *
14333 TTCATAACATTAACTTCATACA
1 TTCATAACATCAACATCATACA
*
14355 TTCATAATATCAACATCATA
1 TTCATAACATCAACATCATA
14375 ACTATAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (22 bp):
TTCATAACATCAACATCATACA
Found at i:22840 original size:16 final size:16
Alignment explanation
Indices: 22819--22883 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
22809 TGTAGGAGTC
22819 TTTC-TTTTCTCTTTGT
1 TTTCTTTTTCT-TTTGT
*
22835 TTTCTTCTTTCTTTTTT
1 TTTCTT-TTTCTTTTGT
* *
22852 TTTCTTTTTTTTTTCT
1 TTTCTTTTTCTTTTGT
* *
22868 TTT-TGTTGCTTTTGT
1 TTTCTTTTTCTTTTGT
22883 T
1 T
22884 GCAGCACTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
15 9 0.22
16 15 0.38
17 11 0.28
18 5 0.12
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (16 bp):
TTTCTTTTTCTTTTGT
Found at i:22851 original size:14 final size:14
Alignment explanation
Indices: 22834--22868 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
22824 TTTCTCTTTG
22834 TTTTCTTCTTTCTT
1 TTTTCTTCTTTCTT
* *
22848 TTTTTTTCTTTTTT
1 TTTTCTTCTTTCTT
22862 TTTTCTT
1 TTTTCTT
22869 TTTGTTGCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTCTTCTTTCTT
Found at i:22856 original size:17 final size:16
Alignment explanation
Indices: 22819--22870 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
22809 TGTAGGAGTC
*
22819 TTTC-TTTTCTCTTTGT
1 TTTCTTTTTCT-TTTTT
22835 TTTCTTCTTTCTTTTTT
1 TTTCTT-TTTCTTTTTT
22852 TTTCTTTTT-TTTTTCT
1 TTTCTTTTTCTTTTT-T
22868 TTT
1 TTT
22871 TGTTGCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 5 0.16
16 11 0.34
17 11 0.34
18 5 0.16
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (16 bp):
TTTCTTTTTCTTTTTT
Found at i:22871 original size:11 final size:11
Alignment explanation
Indices: 22817--22871 Score: 67
Period size: 11 Copynumber: 5.0 Consensus size: 11
22807 GTTGTAGGAG
*
22817 TCTTTCTTTTC
1 TCTTTCTTTTT
*
22828 TCTTTGTTTTCT
1 TCTTTCTTTT-T
22840 TCTTTCTTTTT
1 TCTTTCTTTTT
22851 T-TTTCTTTTT
1 TCTTTCTTTTT
*
22861 TTTTTCTTTTT
1 TCTTTCTTTTT
22872 GTTGCTTTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
10 10 0.26
11 20 0.51
12 9 0.23
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (11 bp):
TCTTTCTTTTT
Found at i:22871 original size:17 final size:17
Alignment explanation
Indices: 22824--22870 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
22814 GAGTCTTTCT
*
22824 TTTCTCTTTGTTTTCTTC
1 TTTCT-TTTTTTTTCTTC
22842 TTTCTTTTTTTTTCTT-
1 TTTCTTTTTTTTTCTTC
22858 TTT-TTTTTCTTTT
1 TTTCTTTTT-TTTT
22871 TGTTGCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 5 0.19
16 7 0.26
17 10 0.37
18 5 0.19
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (17 bp):
TTTCTTTTTTTTTCTTC
Found at i:23264 original size:33 final size:33
Alignment explanation
Indices: 23222--23290 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
23212 GTTGATGAAT
*
23222 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
23255 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
23288 GAA
1 GAA
23291 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:23295 original size:13 final size:12
Alignment explanation
Indices: 23276--23372 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
23266 TTATTGGCGT
23276 GATATGGTGATG
1 GATATGGTGATG
23288 GAATATGGTGAT-
1 G-ATATGGTGATG
*
23300 GATATAGGCG-T-
1 GATAT-GGTGATG
23311 GATAATGGTGATG
1 GAT-ATGGTGATG
23324 GACTATGGTGAT-
1 GA-TATGGTGATG
*
23336 GATATAGGCG-T-
1 GATAT-GGTGATG
*
23347 GATAATGGAGATG
1 GAT-ATGGTGATG
23360 GATTATGGTGATG
1 GA-TATGGTGATG
23373 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:23331 original size:36 final size:36
Alignment explanation
Indices: 23261--23373 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
23251 AATGGAAGGA
* *
23261 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
23296 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
23332 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
23368 TGATGA
1 TGATGA
23374 AAATAGTATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 16 0.22
36 56 0.78
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:24872 original size:19 final size:20
Alignment explanation
Indices: 24848--24889 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
24838 CGTCCAAGAG
24848 CATGTATCTTCATT-AAAAT
1 CATGTATCTTCATTAAAAAT
*
24867 CATGTATTTTCATTAAAAAT
1 CATGTATCTTCATTAAAAAT
24887 CAT
1 CAT
24890 ATATTTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (20 bp):
CATGTATCTTCATTAAAAAT
Found at i:24887 original size:20 final size:19
Alignment explanation
Indices: 24848--24898 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
24838 CGTCCAAGAG
*
24848 CATGTATCTTCATTAAAAT
1 CATGTATTTTCATTAAAAT
24867 CATGTATTTTCATTAAAAAT
1 CATGTATTTTCATT-AAAAT
*
24887 CATATATTTTCA
1 CATGTATTTTCA
24899 AAGGGGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.45
Consensus pattern (19 bp):
CATGTATTTTCATTAAAAT
Found at i:28565 original size:20 final size:21
Alignment explanation
Indices: 28540--28592 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
28530 CGGCAAAGAG
*
28540 CATGTATCTTCA-TTAAAAAT
1 CATGTATTTTCATTTAAAAAT
*
28560 CATGTATTTTCATTTAAAAGT
1 CATGTATTTTCATTTAAAAAT
28581 CATGTATTTTCA
1 CATGTATTTTCA
28593 AAGGGGTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 11 0.37
21 19 0.63
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAT
Found at i:32653 original size:19 final size:21
Alignment explanation
Indices: 32629--32680 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
32619 CGGCCAAGAG
*
32629 CATGTATCTTCA-TTAAAA-T
1 CATGTATTTTCATTTAAAAGT
32648 CATGTATTTTCATTTAAAAGT
1 CATGTATTTTCATTTAAAAGT
32669 CATGTATTTTCA
1 CATGTATTTTCA
32681 AAGGGGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 6 0.20
21 13 0.43
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAGT
Found at i:35507 original size:22 final size:23
Alignment explanation
Indices: 35479--35530 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
35469 ATTTAGAAGT
35479 TGGTGATAATATAGGCGTGAT-A
1 TGGTGATAATATAGGCGTGATAA
*
35501 TGGTGATCATATAGGCGTGATAA
1 TGGTGATAATATAGGCGTGATAA
35524 TGGTGAT
1 TGGTGAT
35531 GGACAGATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.29, C:0.06, G:0.33, T:0.33
Consensus pattern (23 bp):
TGGTGATAATATAGGCGTGATAA
Found at i:39391 original size:19 final size:22
Alignment explanation
Indices: 39367--39412 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 22
39357 TGTAGGAGTC
39367 TTTTTCTT-TTCTTT-TT-TTG
1 TTTTTCTTCTTCTTTCTTGTTG
39386 TTTTTCTTCTTCTTTCTTGTTG
1 TTTTTCTTCTTCTTTCTTGTTG
39408 TTTTT
1 TTTTT
39413 TTGTTGTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.33
20 6 0.25
21 2 0.08
22 8 0.33
ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80
Consensus pattern (22 bp):
TTTTTCTTCTTCTTTCTTGTTG
Found at i:39638 original size:16 final size:16
Alignment explanation
Indices: 39617--39652 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
39607 ATGAAAGAAG
39617 AAAGGAAAT-GATAAGA
1 AAAGGAAATGGAT-AGA
39633 AAAGGAAATGGATAGA
1 AAAGGAAATGGATAGA
39649 AAAG
1 AAAG
39653 TTTTCGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.61, C:0.00, G:0.28, T:0.11
Consensus pattern (16 bp):
AAAGGAAATGGATAGA
Found at i:39838 original size:35 final size:36
Alignment explanation
Indices: 39786--39855 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 36
39776 TGGAAATTTA
*
39786 GAATTTGGTGATAATATAGGCGTGAT-ATGGTGATG
1 GAATATGGTGATAATATAGGCGTGATAATGGTGATG
*
39821 GAATATGGTGATGATATAGGCGTGATAATGGTGAT
1 GAATATGGTGATAATATAGGCGTGATAATGGTGAT
39856 AGACATATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 24 0.75
36 8 0.25
ACGTcount: A:0.30, C:0.03, G:0.34, T:0.33
Consensus pattern (36 bp):
GAATATGGTGATAATATAGGCGTGATAATGGTGATG
Found at i:41602 original size:35 final size:37
Alignment explanation
Indices: 41533--41612 Score: 128
Period size: 35 Copynumber: 2.2 Consensus size: 37
41523 ATACTATTTC
*
41533 CATCACCATAATCCATCTTCCATTATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
*
41570 CATCACCATAGTCCATC-ACCA-TATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
41605 CATCACCA
1 CATCACCA
41613 AATTCTCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
35 22 0.54
36 3 0.07
37 16 0.39
ACGTcount: A:0.31, C:0.38, G:0.04, T:0.28
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACGCCTATAT
Found at i:42107 original size:21 final size:21
Alignment explanation
Indices: 42040--42107 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
42030 GCAAAAGAAA
*
42040 GAAGCACATGGAATGCTAAGG
1 GAAGCTCATGGAATGCTAAGG
* * *
42061 GAAGCTCA--CAAAG-TACAAG
1 GAAGCTCATGGAATGCTA-AGG
*
42080 GCAGCTCATGGAATGCTAAGG
1 GAAGCTCATGGAATGCTAAGG
42101 GAAGCTC
1 GAAGCTC
42108 GATTCAGCTG
Statistics
Matches: 34, Mismatches: 9, Indels: 8
0.67 0.18 0.16
Matches are distributed among these distances:
18 2 0.06
19 12 0.35
21 18 0.53
22 2 0.06
ACGTcount: A:0.37, C:0.19, G:0.29, T:0.15
Consensus pattern (21 bp):
GAAGCTCATGGAATGCTAAGG
Found at i:46083 original size:11 final size:13
Alignment explanation
Indices: 46051--46080 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
46041 TGGCCAAAGA
46051 TGAAAAGGTATGT
1 TGAAAAGGTATGT
46064 TGAAAAGGTATG-
1 TGAAAAGGTATGT
46076 TGAAA
1 TGAAA
46081 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Done.