genome.fa.s9130.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009130.1 Hibiscus syriacus cultivar Beakdansim tig00112627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61188

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6275--6299	2	12.5	2	100	0	50	48	0	0	52	1.00
10112--10179	34	2.0	34	97	0	127	32	22	11	33	1.90
16020--16072	26	2.1	25	86	10	72	64	0	0	35	0.94
17577--17617	19	2.1	20	95	4	75	48	17	0	34	1.47
23074--23121	23	2.1	23	88	0	69	35	12	18	33	1.89
23511--23571	23	2.7	23	89	0	86	37	19	6	36	1.78
23929--23980	23	2.3	22	90	6	77	44	19	1	34	1.62
23939--24001	23	2.7	23	90	0	90	38	19	6	36	1.77
24359--24429	22	3.2	23	80	6	74	40	21	5	32	1.76
24792--24854	23	2.7	23	90	0	90	38	19	6	36	1.77
25168--25206	20	2.0	20	89	0	60	48	10	15	25	1.76
25219--25280	22	2.7	23	85	5	81	38	19	6	35	1.77
23232--27002	425	8.9	431	97	2	7161	39	12	8	39	1.74
25628--25704	23	3.5	22	78	7	75	41	19	5	33	1.74
26059--26110	23	2.3	22	90	6	77	44	19	1	34	1.62
26069--26131	23	2.7	23	90	0	90	38	19	6	36	1.77
26504--26545	20	2.1	20	86	0	57	40	19	9	30	1.83
26903--26954	23	2.3	22	90	6	77	44	19	1	34	1.62
26913--26975	23	2.7	23	90	0	90	38	19	6	36	1.77
27856--29018	196	5.9	199	96	1	2114	30	16	15	37	1.90
27856--29018	395	2.9	394	96	2	2127	30	16	15	37	1.90
29136--29184	19	2.6	19	93	0	80	57	10	2	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31085--31133	21	2.3	22	79	10	57	18	26	16	38	1.91
33350--33392	20	2.3	18	82	17	61	18	16	11	53	1.72
33355--33401	20	2.3	20	89	10	78	17	17	10	55	1.69
33523--33568	20	2.3	20	89	10	76	17	17	10	54	1.70
42367--42622	127	2.0	127	99	0	503	26	16	29	27	1.97
50419--50444	9	2.9	9	100	0	52	23	19	34	23	1.96
50911--51144	51	4.8	51	80	13	242	31	17	33	17	1.93
51027--51102	39	1.9	39	94	0	134	35	18	32	13	1.89
50976--51144	90	1.9	90	91	0	275	33	18	31	15	1.92
50970--51161	90	2.1	90	85	1	269	32	18	31	17	1.94
57305--57406	31	3.3	31	87	4	136	28	16	18	36	1.93
57323--57420	31	3.2	31	82	7	85	29	18	18	33	1.95
58683--58725	19	2.4	19	84	7	54	23	27	20	27	1.99

Tables:   1

The End!