genome.fa.s9131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009131.1 Hibiscus syriacus cultivar Beakdansim tig00112628_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116553

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4636--4671	6	5.8	6	87	6	54	77	0	5	16	0.94
5072--5116	21	2.1	21	100	0	90	44	20	8	26	1.80
7546--7581	15	2.5	15	90	4	56	69	5	2	22	1.22
15374--15412	20	2.0	19	90	5	60	30	0	0	69	0.89
15382--15427	19	2.5	20	79	13	53	30	2	0	67	1.03
16389--16429	19	2.0	21	86	9	59	48	0	2	48	1.14
17948--18105	53	3.0	53	90	0	253	27	23	21	27	1.99
20648--20740	21	4.5	21	78	4	100	39	18	24	17	1.91
20648--20740	41	2.3	41	100	0	186	39	18	24	17	1.91
20667--20801	41	3.3	41	84	6	150	37	22	22	18	1.95
20729--20843	20	5.7	20	79	9	99	33	24	18	23	1.96
20685--20843	20	7.7	22	74	11	72	37	22	19	21	1.95
21011--21054	22	2.0	22	95	0	79	20	45	15	18	1.85
22692--22736	18	2.5	18	88	0	72	26	44	15	13	1.83
23211--23266	20	2.8	20	83	2	69	37	23	23	16	1.93
23266--23323	14	3.9	14	77	16	62	48	22	17	12	1.80
23250--23340	32	2.8	33	93	3	157	47	20	18	13	1.82
23357--23414	14	3.9	14	79	16	71	8	18	25	46	1.78
23354--23430	32	2.4	33	93	2	129	10	20	24	44	1.83
23415--23470	20	2.8	19	84	7	67	16	25	21	37	1.93
25337--25372	14	2.6	14	90	0	54	30	0	22	47	1.52
25489--25556	19	3.8	19	85	14	101	47	17	22	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25575--25612	20	1.9	20	94	0	67	15	21	23	39	1.92
26664--26722	24	2.5	24	88	0	82	25	16	22	35	1.95
26897--26921	12	2.1	12	100	0	50	72	0	28	0	0.86
29214--29340	33	3.8	33	86	4	193	43	19	22	14	1.88
29215--29347	66	2.0	66	95	0	239	42	19	21	16	1.89
29355--29411	14	3.7	14	75	20	60	8	24	22	43	1.81
29340--29429	33	2.7	33	94	0	153	13	22	21	43	1.87
29369--29429	19	3.5	19	72	21	69	11	22	21	44	1.84
29536--29572	14	2.6	14	91	0	65	45	24	0	29	1.53
32514--32721	19	11.1	19	84	7	255	45	20	22	12	1.84
32717--32761	19	2.4	19	84	0	63	6	13	24	55	1.62
33315--33428	20	5.7	20	82	6	122	25	18	24	31	1.97
33315--33431	61	1.9	61	87	0	171	24	17	23	33	1.97
33417--33471	20	2.7	21	77	5	58	20	21	16	41	1.90
33499--33539	21	2.0	21	85	0	55	34	31	17	17	1.93
34605--34638	17	2.0	17	94	0	59	32	29	14	23	1.94
37381--37458	7	11.3	7	77	13	63	17	0	29	52	1.45
37381--37458	21	3.8	20	83	8	86	17	0	29	52	1.45
37513--37570	7	8.3	7	86	0	71	22	0	31	46	1.52
37513--37570	21	2.8	21	89	0	89	22	0	31	46	1.52
37512--37567	28	2.0	28	92	0	94	25	0	30	44	1.54
38404--38436	16	2.1	16	88	11	50	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42233--42269	17	2.2	17	100	0	74	67	0	0	32	0.91
42240--42284	24	2.0	22	82	8	54	60	0	4	35	1.17
42438--42494	3	19.0	3	81	0	60	28	35	5	31	1.79
44362--44415	27	2.0	28	85	10	76	66	3	0	29	1.09
50179--50235	29	2.0	29	85	0	78	22	35	31	10	1.88
50379--50463	29	2.9	29	83	0	107	14	28	40	17	1.88
59095--59133	2	20.0	2	84	5	53	48	0	0	51	1.00
61598--61644	3	15.7	3	100	0	94	68	0	0	31	0.90
61747--61787	22	1.9	21	85	14	57	65	2	4	26	1.25
62860--62913	17	3.1	17	74	12	56	74	0	3	22	0.98
62861--62926	4	16.0	4	79	14	55	71	3	3	22	1.14
62861--62926	13	5.3	12	77	12	55	71	3	3	22	1.14
62956--63043	41	2.2	42	84	10	112	42	6	2	48	1.42
62956--63147	36	5.1	40	79	14	134	43	9	1	45	1.45
63040--63100	13	5.0	12	71	16	54	47	11	0	40	1.40
62994--63256	36	7.3	36	76	15	206	42	8	3	45	1.50
74947--75070	31	4.0	31	74	13	110	33	19	16	30	1.94
75060--75131	30	2.4	30	90	0	108	25	20	23	30	1.99
76975--77002	9	3.1	9	100	0	56	78	0	0	21	0.75
76977--77024	14	3.4	14	83	11	53	77	0	10	12	1.00
78027--78055	3	9.7	3	100	0	58	68	0	0	31	0.89
78120--78190	26	2.7	25	75	18	72	67	1	5	25	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78159--78199	22	1.9	21	85	14	57	65	2	4	26	1.25
78212--78300	29	3.1	29	74	17	78	60	5	8	24	1.48
79236--79272	14	2.7	13	91	8	56	81	0	2	16	0.81
79237--79281	18	2.4	18	88	3	63	77	0	2	20	0.87
79244--79284	13	3.2	13	89	6	57	78	0	0	21	0.76
79363--79410	2	24.5	2	91	4	80	52	0	0	47	1.00
79400--79554	71	2.2	67	83	12	179	43	9	1	45	1.45
79301--79556	35	7.2	36	76	13	210	44	9	1	45	1.43
79542--79572	2	15.5	2	100	0	62	48	0	0	51	1.00
79507--79653	47	3.1	47	76	13	140	44	6	2	45	1.44
79604--79681	35	2.1	38	86	6	108	42	8	3	44	1.54
79600--79688	38	2.3	41	75	18	100	42	7	3	46	1.49
80554--80620	26	2.5	27	92	4	118	20	20	4	53	1.63
83565--83736	58	2.9	56	76	10	175	32	17	5	44	1.73
83602--83635	18	1.9	18	88	5	52	38	11	2	47	1.55
83565--83736	60	2.9	58	76	8	177	32	17	5	44	1.73
83886--84010	60	2.1	60	85	8	175	40	6	20	32	1.78
84104--84152	2	24.5	2	100	0	98	51	0	0	48	1.00
84391--84471	2	41.0	2	93	2	137	50	0	0	49	1.00
89222--89254	15	2.3	15	89	5	50	21	18	21	39	1.93
93467--93519	27	1.9	28	92	3	90	32	13	18	35	1.90
93562--93949	184	2.1	184	92	2	638	46	7	2	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95310--95344	2	17.5	2	93	0	52	42	0	5	51	1.25
96213--96344	31	4.3	29	69	18	81	47	0	4	46	1.28
96268--96301	16	2.1	16	88	0	50	52	0	2	44	1.16
96370--96450	27	3.0	27	77	13	78	50	1	1	46	1.17
96436--96483	21	2.2	22	85	3	62	52	0	0	47	1.00
96386--96490	54	1.9	53	83	7	131	51	0	1	45	1.18
96530--96577	23	2.1	23	88	7	71	56	0	0	43	0.99
96501--96583	31	2.6	33	83	9	93	51	0	2	45	1.14
96537--96590	23	2.5	22	82	14	67	59	0	0	40	0.98
96537--96601	12	5.8	12	72	13	50	55	0	1	43	1.09
98435--98539	54	1.9	53	81	11	124	50	1	1	45	1.23
98516--98636	31	4.0	30	75	15	99	50	0	3	45	1.23
98579--98625	22	2.1	23	88	4	69	53	0	2	44	1.12
98586--98639	22	2.5	21	80	11	56	55	0	1	42	1.10
103415--103519	54	1.9	53	81	11	124	50	1	1	45	1.23
103496--103616	31	4.0	30	75	15	99	50	0	3	45	1.23
103559--103605	22	2.1	23	88	4	69	53	0	2	44	1.12
103566--103619	22	2.5	21	80	11	56	55	0	1	42	1.10
107673--107727	19	2.8	21	84	13	64	52	1	0	45	1.11
107808--108016	37	5.7	34	78	12	168	42	2	9	44	1.51
107977--108030	26	2.2	24	83	6	63	40	3	7	48	1.49
108109--108155	3	15.7	3	79	16	53	31	0	2	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108116--108162	23	2.0	23	88	8	69	31	0	2	65	1.04
115931--116365	198	2.2	197	84	3	545	34	18	18	28	1.95

Tables:   1

The End!