Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009135.1 Hibiscus syriacus cultivar Beakdansim tig00112635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87379
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:4016 original size:30 final size:30
Alignment explanation
Indices: 3982--4046 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
3972 AATAATAGTT
* *
3982 CATTTAATC-ATAATTTTTCATATAATGACC
1 CATTTAATCAAT-ATTTTTCACATAAAGACC
* *
4012 CATTTTATCAATATTTTTCACATAAAGACT
1 CATTTAATCAATATTTTTCACATAAAGACC
4042 CATTT
1 CATTT
4047 GAATTATGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (30 bp):
CATTTAATCAATATTTTTCACATAAAGACC
Found at i:12294 original size:93 final size:92
Alignment explanation
Indices: 12137--12428 Score: 315
Period size: 91 Copynumber: 3.2 Consensus size: 92
12127 TCTAAACTTC
* ** * * * *
12137 AAAAA-AATAATG-AAAACAATAATGGTAAGCTAATATGTCCAAAAACCAAGTGCAACTAAATAT
1 AAAAACAACAATGAAAAACAATAATAATAAGCTAATATGTCTAAAAATCAAGTACAACAAAATAT
*
12200 CCAGATCGATAATCAAACCAACTGCTAT
66 CCAGA-CAATAATCAAACCAACTGCTAT
* * ** *
12228 AAAAATAACAATGAAATAATAATAAT-ATAAGCTAATATGTCTAAAAATCGTGTATAACAAAATA
1 AAAAACAACAATGAAA-AACAATAATAATAAGCTAATATGTCTAAAAATCAAGTACAACAAAATA
* **
12292 TCCAGACTAATAATCAAATCAACTATTAT
65 TCCAGAC-AATAATCAAACCAACTGCTAT
*
12321 -AAAACAACAAT-AAAAACAATAATAATAAGTTAATATGTCTAAAAATCAAGTACAACAAAATAT
1 AAAAACAACAATGAAAAACAATAATAATAAGCTAATATGTCTAAAAATCAAGTACAACAAAATAT
* * * * *
12384 CTATACCAATAATTAAACTATCTGCTAT
66 CCAGA-CAATAATCAAACCAACTGCTAT
12412 AAAAACAACAATGAAAA
1 AAAAACAACAATGAAAA
12429 TAAAAAAGAA
Statistics
Matches: 165, Mismatches: 28, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
90 8 0.05
91 61 0.37
92 29 0.18
93 59 0.36
94 8 0.05
ACGTcount: A:0.54, C:0.14, G:0.07, T:0.24
Consensus pattern (92 bp):
AAAAACAACAATGAAAAACAATAATAATAAGCTAATATGTCTAAAAATCAAGTACAACAAAATAT
CCAGACAATAATCAAACCAACTGCTAT
Found at i:12470 original size:27 final size:27
Alignment explanation
Indices: 12439--12501 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
12429 TAAAAAAGAA
* *
12439 GTCTCAAAATCAAGTAGAACAAAGTAT
1 GTCTCAAAACCAAGTAGAACAAAATAT
*
12466 GTCTCAACACCAAGTAGAACAAAATAT
1 GTCTCAAAACCAAGTAGAACAAAATAT
*
12493 GTCTAAAAA
1 GTCTCAAAA
12502 ATAACATACT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (27 bp):
GTCTCAAAACCAAGTAGAACAAAATAT
Found at i:19143 original size:21 final size:19
Alignment explanation
Indices: 19109--19148 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
19099 AGACTATAAT
19109 TATTAATAAAAAAATATTTA
1 TATTAATAAAAAAAT-TTTA
*
19129 TATTATATTAAAAAATTTTA
1 TATTA-ATAAAAAAATTTTA
19149 AATTTTAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TATTAATAAAAAAATTTTA
Found at i:27679 original size:23 final size:23
Alignment explanation
Indices: 27649--27695 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
27639 AAATTAGAAA
27649 TTACTCCCCCTTACTTTAACACT
1 TTACTCCCCCTTACTTTAACACT
27672 TTACTCCCCCTTACTTTAACACT
1 TTACTCCCCCTTACTTTAACACT
27695 T
1 T
27696 ATTCTTCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.38, G:0.00, T:0.40
Consensus pattern (23 bp):
TTACTCCCCCTTACTTTAACACT
Found at i:29968 original size:21 final size:21
Alignment explanation
Indices: 29942--29981 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
29932 CAGAACCCCA
*
29942 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
29963 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
29982 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:33871 original size:22 final size:21
Alignment explanation
Indices: 33829--33868 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
33819 GAGTTTGTTT
*
33829 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
33850 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
33869 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:37387 original size:92 final size:89
Alignment explanation
Indices: 37261--37605 Score: 287
Period size: 92 Copynumber: 3.9 Consensus size: 89
37251 CTAAACTTCA
* * * *
37261 AAAAAATAATGAAAACAATAATGGTAAGCTAATATATCTAAAAATCAAGTGCAACAAAATATTCA
1 AAAAAACAAT-AAAACAATAATGGTAAGCTAATATGTCTAAAAACCAAGTGCAACAAAATATCCA
*
37326 TACCAATAATCAAACCAAATGATAT
65 TACCAATAATCAAACCAACTGATAT
* * *
37351 AAAGATAACAATAAAAATAATAATGGTAAGCTAATATGTCTAAAAACCAAGTGCAACTAAATCTC
1 AAA-A-AACAAT-AAAACAATAATGGTAAGCTAATATGTCTAAAAACCAAGTGCAACAAAATATC
*** * *
37416 CAGGTCGATAATCAAACCAACTGCTAT
63 CATACCAATAATCAAACCAACTGATAT
* * * * * *
37443 --------A-AAAACAATAATGATAAGTTAATATGTCTAAAAATCATGTGAAACAAAATATTCAT
1 AAAAAACAATAAAACAATAATGGTAAGCTAATATGTCTAAAAACCAAGTGCAACAAAATATCCAT
* *
37499 ACTAATAATCAAATCAACT-ATTAT
66 ACCAATAATCAAACCAACTGA-TAT
** * * **
37523 AAAAACAACAATGAAAACAATAATAATAAGTTAATATCTCTAAAAACCAAGTATAACAAAATATC
1 -AAAA-AACAAT-AAAACAATAATGGTAAGCTAATATGTCTAAAAACCAAGTGCAACAAAATATC
* *
37588 CATGCCAATAATTAAACC
63 CATACCAATAATCAAACC
37606 TGCTCCTATA
Statistics
Matches: 199, Mismatches: 41, Indels: 28
0.74 0.15 0.10
Matches are distributed among these distances:
80 62 0.31
82 1 0.01
90 4 0.02
91 1 0.01
92 131 0.66
ACGTcount: A:0.53, C:0.15, G:0.08, T:0.24
Consensus pattern (89 bp):
AAAAAACAATAAAACAATAATGGTAAGCTAATATGTCTAAAAACCAAGTGCAACAAAATATCCAT
ACCAATAATCAAACCAACTGATAT
Found at i:37507 original size:80 final size:79
Alignment explanation
Indices: 37361--37536 Score: 192
Period size: 80 Copynumber: 2.2 Consensus size: 79
37351 AAAGATAACA
* * * * * *
37361 ATAAAAATAATAATGGTAAGCTAATATGTCTAAAAACCAAGTGCAACTAAATCTCCAGGTCGATA
1 ATAAAAACAATAATGATAAGCTAATATGTCTAAAAACCAAGTGAAACAAAATATCCA-GTCAATA
*
37426 ATCAAACCAACTGCT
65 ATCAAACCAACTACT
* * * *
37441 ATAAAAACAATAATGATAAGTTAATATGTCTAAAAATCATGTGAAACAAAATATTCA-TACTAAT
1 ATAAAAACAATAATGATAAGCTAATATGTCTAAAAACCAAGTGAAACAAAATATCCAGT-C-AAT
* *
37505 AATCAAATCAACTATT
64 AATCAAACCAACTACT
*
37521 ATAAAAACAACAATGA
1 ATAAAAACAATAATGA
37537 AAACAATAAT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 1 0.01
79 1 0.01
80 78 0.98
ACGTcount: A:0.51, C:0.15, G:0.09, T:0.26
Consensus pattern (79 bp):
ATAAAAACAATAATGATAAGCTAATATGTCTAAAAACCAAGTGAAACAAAATATCCAGTCAATAA
TCAAACCAACTACT
Found at i:37616 original size:92 final size:92
Alignment explanation
Indices: 37444--37631 Score: 234
Period size: 92 Copynumber: 2.0 Consensus size: 92
37434 AACTGCTATA
* * * * * *
37444 AAAACAATAATGATAAGTTAATATGTCTAAAAATCATGTGAAACAAAATATTCATACTAATAATC
1 AAAACAATAATAATAAGTTAATATCTCTAAAAACCAAGTGAAACAAAATATCCATACCAATAATC
* *
37509 AAATCAACTATTATAAAAACAACAATG
66 AAACCAACTACTATAAAAACAACAATG
*
37536 AAAACAATAATAATAAGTTAATATCTCTAAAAACCAAGT-ATAACAAAATATCCATGCCAATAAT
1 AAAACAATAATAATAAGTTAATATCTCTAAAAACCAAGTGA-AACAAAATATCCATACCAATAAT
* ** * *
37600 TAAACCTGCTCCTATAAAAATAACAATG
65 CAAACCAACTACTATAAAAACAACAATG
37628 AAAA
1 AAAA
37632 TAAAAAAGTG
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
91 1 0.01
92 80 0.99
ACGTcount: A:0.54, C:0.14, G:0.06, T:0.26
Consensus pattern (92 bp):
AAAACAATAATAATAAGTTAATATCTCTAAAAACCAAGTGAAACAAAATATCCATACCAATAATC
AAACCAACTACTATAAAAACAACAATG
Found at i:37617 original size:172 final size:172
Alignment explanation
Indices: 37272--37628 Score: 437
Period size: 172 Copynumber: 2.1 Consensus size: 172
37262 AAAAATAATG
* *
37272 AAAACAATAATGGTAAGCTAATATATCTAAAAATCAAGTGCAACAAAATATTCATACCAATAATC
1 AAAACAATAATGATAAGCTAATATATCTAAAAATCAAGTGAAACAAAATATTCATACCAATAATC
* * * ** *
37337 AAACCAAATGATATAAAGATAACAATAAAAATAATAATGGTAAGCTAATATGTCTAAAAACCAAG
66 AAACCAAATGATATAAAAACAACAATAAAAACAATAATAATAAGCTAATATCTCTAAAAACCAAG
* * * * * *
37402 TGCAACTAAATCTCCAGGTCGATAATCAAACCAACTGCTATA
131 TACAACAAAATATCCAGGCCAATAATCAAACCAACTCCTATA
* * * *
37444 AAAACAATAATGATAAGTTAATATGTCTAAAAATCATGTGAAACAAAATATTCATACTAATAATC
1 AAAACAATAATGATAAGCTAATATATCTAAAAATCAAGTGAAACAAAATATTCATACCAATAATC
* * * *
37509 AAATCAACT-ATTATAAAAACAACAATGAAAACAATAATAATAAGTTAATATCTCTAAAAACCAA
66 AAACCAAATGA-TATAAAAACAACAATAAAAACAATAATAATAAGCTAATATCTCTAAAAACCAA
* * * **
37573 GTATAACAAAATATCCATGCCAATAATTAAACCTGCTCCTATA
130 GTACAACAAAATATCCAGGCCAATAATCAAACCAACTCCTATA
* *
37616 AAAATAACAATGA
1 AAAACAATAATGA
37629 AAATAAAAAA
Statistics
Matches: 155, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
171 1 0.01
172 154 0.99
ACGTcount: A:0.52, C:0.15, G:0.08, T:0.25
Consensus pattern (172 bp):
AAAACAATAATGATAAGCTAATATATCTAAAAATCAAGTGAAACAAAATATTCATACCAATAATC
AAACCAAATGATATAAAAACAACAATAAAAACAATAATAATAAGCTAATATCTCTAAAAACCAAG
TACAACAAAATATCCAGGCCAATAATCAAACCAACTCCTATA
Found at i:42991 original size:18 final size:18
Alignment explanation
Indices: 42929--42992 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
42919 TTTATTGAAA
*
42929 AACCGATAAACCGAACCG
1 AACCGAAAAACCGAACCG
*
42947 AACTGAAAAACCTGAACCG
1 AACCGAAAAACC-GAACCG
42966 TTAA---AAAAACCGAACCG
1 --AACCGAAAAACCGAACCG
42983 AACCGAAAAA
1 AACCGAAAAA
42993 TCAGTTTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
15 2 0.05
17 6 0.16
18 22 0.58
19 6 0.16
21 2 0.05
ACGTcount: A:0.52, C:0.27, G:0.14, T:0.08
Consensus pattern (18 bp):
AACCGAAAAACCGAACCG
Found at i:46081 original size:29 final size:29
Alignment explanation
Indices: 46039--46097 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
46029 ATTTTCACCT
46039 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
*
46068 AACTAAATTGATGTAAGTAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
46097 A
1 A
46098 TTAATTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.25
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:50690 original size:29 final size:29
Alignment explanation
Indices: 50648--50706 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
50638 ATTTTCACCT
50648 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
50677 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
50706 A
1 A
50707 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:51019 original size:14 final size:14
Alignment explanation
Indices: 50998--51032 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
50988 GCTCTTTGGG
50998 TAATAAAAAAATAA
1 TAATAAAAAAATAA
*
51012 TTATAAAAAAATAA
1 TAATAAAAAAATAA
51026 TAATAAA
1 TAATAAA
51033 GTAATTCATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
TAATAAAAAAATAA
Found at i:61509 original size:29 final size:30
Alignment explanation
Indices: 61467--61540 Score: 132
Period size: 30 Copynumber: 2.5 Consensus size: 30
61457 TTATGGTATC
61467 AGTCCTTATACTATTCT-AAATTGAAATAT
1 AGTCCTTATACTATTCTCAAATTGAAATAT
*
61496 AGTCCTTATACTATTCTCAATTTGAAATAT
1 AGTCCTTATACTATTCTCAAATTGAAATAT
61526 AGTCCTTATACTATT
1 AGTCCTTATACTATT
61541 GTTAATGTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
29 17 0.40
30 26 0.60
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43
Consensus pattern (30 bp):
AGTCCTTATACTATTCTCAAATTGAAATAT
Found at i:65142 original size:20 final size:20
Alignment explanation
Indices: 65119--65157 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
65109 ATTTACGAAA
*
65119 ATGACCAACAATTTCGCAAC
1 ATGAACAACAATTTCGCAAC
**
65139 ATGAACTCCAATTTCGCAA
1 ATGAACAACAATTTCGCAA
65158 ACAGGTTCCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.23
Consensus pattern (20 bp):
ATGAACAACAATTTCGCAAC
Found at i:65179 original size:23 final size:20
Alignment explanation
Indices: 65153--65216 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 20
65143 ACTCCAATTT
65153 CGCAAACAGGTTCCAAATCGCAA
1 CGCAAACAGG-T--AAATCGCAA
*
65176 CGCAAATAGGTAAATCGCAA
1 CGCAAACAGGTAAATCGCAA
* *
65196 CG-ATAATATGTAAATCGCAA
1 CGCA-AACAGGTAAATCGCAA
65216 C
1 C
65217 AGAATATGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
19 1 0.03
20 27 0.71
22 1 0.03
23 9 0.24
ACGTcount: A:0.42, C:0.23, G:0.17, T:0.17
Consensus pattern (20 bp):
CGCAAACAGGTAAATCGCAA
Found at i:65192 original size:20 final size:21
Alignment explanation
Indices: 65167--65241 Score: 95
Period size: 20 Copynumber: 3.8 Consensus size: 21
65157 AACAGGTTCC
*
65167 AAATCGCAACGCA-AATAGGT
1 AAATCGCAACGCAGAATATGT
*
65187 AAATCGCAACG-ATAATATGT
1 AAATCGCAACGCAGAATATGT
65207 AAATCGCAA--CAGAATATGT
1 AAATCGCAACGCAGAATATGT
*
65226 AAATCGCAACACAGAA
1 AAATCGCAACGCAGAA
65242 GTCAAATTCG
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
19 18 0.37
20 26 0.53
21 5 0.10
ACGTcount: A:0.48, C:0.19, G:0.16, T:0.17
Consensus pattern (21 bp):
AAATCGCAACGCAGAATATGT
Found at i:65311 original size:20 final size:20
Alignment explanation
Indices: 65286--65353 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
65276 AACAGTACTA
*
65286 TCGCAACGCGAATTTCGTTT
1 TCGCAACGCGAATTTCATTT
***
65306 TCGCAACGCG-ATTCTCCAAAA
1 TCGCAACGCGAATT-T-CATTT
65327 TCGCAACGCGAATTTCATTT
1 TCGCAACGCGAATTTCATTT
65347 TCGCAAC
1 TCGCAAC
65354 ACTAATTACC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
19 3 0.08
20 20 0.53
21 12 0.32
22 3 0.08
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (20 bp):
TCGCAACGCGAATTTCATTT
Found at i:65420 original size:22 final size:22
Alignment explanation
Indices: 65385--65426 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
65375 TTAGCGTTGC
65385 GAAATTCGAGTTGCGAATTTAGA
1 GAAATTCGAGTTGCG-ATTTAGA
*
65408 GAAA-TCGCGTTGCGATTTA
1 GAAATTCGAGTTGCGATTTA
65427 CATATTATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 9 0.50
23 4 0.22
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (22 bp):
GAAATTCGAGTTGCGATTTAGA
Found at i:65660 original size:20 final size:20
Alignment explanation
Indices: 65637--65698 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
65627 GTGTTGGGAT
*
65637 TTACCTATTCGCGTTGTGAA
1 TTACCTATTCGCGTTGCGAA
* ** *
65657 TTACATATTATCGTTGCGAT
1 TTACCTATTCGCGTTGCGAA
*
65677 TTAACTATTCGCGTTGCGAA
1 TTACCTATTCGCGTTGCGAA
65697 TT
1 TT
65699 TGGAAAATCG
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.42
Consensus pattern (20 bp):
TTACCTATTCGCGTTGCGAA
Found at i:67749 original size:2 final size:2
Alignment explanation
Indices: 67742--67774 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
67732 CCGGCTCATC
67742 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67775 ATTTTCATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.