genome.fa.s9137.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009137.1 Hibiscus syriacus cultivar Beakdansim tig00112637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  390993

Tables:   1   2   

This is table  2  of  2  ( 236 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205377--205830	165	2.7	164	84	5	556	29	24	21	24	1.99
205377--205875	249	2.0	246	87	2	723	29	25	20	24	1.99
205377--205830	84	5.5	82	79	8	447	29	24	21	24	1.99
206473--206812	34	9.9	34	70	21	192	45	3	6	43	1.48
206654--206786	64	2.1	62	80	9	144	46	3	6	42	1.48
206718--206787	36	1.9	36	86	11	99	48	2	5	42	1.41
208723--208764	20	2.2	20	83	8	52	54	9	16	19	1.69
213002--213034	2	16.5	2	100	0	66	0	48	0	51	1.00
219326--219374	15	3.3	15	94	0	80	30	38	8	22	1.83
222768--222794	11	2.5	11	100	0	54	7	40	0	51	1.30
225736--225920	91	2.0	91	100	0	370	20	18	23	37	1.94
227079--227109	7	4.4	7	95	0	53	12	58	3	25	1.50
231327--231364	20	1.9	20	89	10	60	13	31	34	21	1.91
231496--231542	23	2.0	23	100	0	94	42	8	27	21	1.81
232169--232219	2	25.5	2	100	0	102	50	0	0	49	1.00
233382--233424	22	2.0	22	90	4	70	18	23	32	25	1.97
237711--237755	23	2.0	22	86	4	63	55	6	13	24	1.62
238902--238961	28	2.1	29	84	3	77	30	5	11	53	1.58
239670--239724	26	2.1	26	80	12	60	47	0	0	52	1.00
242010--242155	73	2.0	73	87	0	211	34	7	14	43	1.73
242187--242226	2	20.0	2	100	0	80	50	0	0	50	1.00
255297--255322	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267709--267830	40	3.0	40	96	0	226	22	17	27	32	1.96
267934--268060	48	2.8	45	83	7	148	38	7	22	31	1.81
268814--268853	21	1.9	21	94	0	71	55	5	2	37	1.35
277106--277148	7	6.0	7	78	5	50	20	0	37	41	1.53
277108--277149	14	2.9	14	89	6	66	23	0	33	42	1.55
281370--281409	16	2.4	17	83	4	55	22	5	25	47	1.71
281811--281864	21	2.6	21	93	0	90	24	22	29	24	1.99
282135--282176	18	2.4	17	81	14	50	50	4	14	30	1.63
286471--286502	14	2.3	14	100	0	64	25	34	25	15	1.95
292562--292620	31	1.9	31	92	0	100	42	5	8	44	1.57
292644--292788	22	6.6	22	84	3	202	47	9	0	42	1.36
292644--292788	44	3.3	44	90	3	229	47	9	0	42	1.36
292775--292814	12	3.6	12	77	16	50	52	0	2	45	1.14
292667--292805	66	2.1	66	86	4	190	48	7	0	42	1.37
294114--294169	17	3.4	17	73	14	62	42	0	0	57	0.99
294104--294176	33	2.3	31	86	9	94	38	0	0	61	0.96
294119--294179	15	3.9	15	73	12	59	42	0	0	57	0.98
295899--295978	42	1.9	42	84	0	106	21	33	21	23	1.97
295974--296044	21	3.4	21	75	14	74	18	30	22	28	1.97
296156--297403	117	10.7	117	89	1	1852	32	21	23	22	1.98
296156--297408	116	10.8	115	89	2	1846	32	21	23	22	1.98
296156--297408	233	5.4	232	90	1	1913	32	21	23	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300502--300546	16	2.9	16	75	21	51	37	0	0	62	0.96
300570--300627	26	2.1	28	81	6	66	41	1	3	53	1.28
300629--300670	20	2.1	20	86	0	57	47	0	0	52	1.00
300855--300910	28	2.0	29	85	3	78	60	5	5	28	1.41
300950--301007	28	2.1	28	87	6	82	51	3	1	43	1.28
310834--310865	2	16.0	2	100	0	64	0	50	0	50	1.00
310865--310899	2	17.5	2	100	0	70	48	0	0	51	1.00
315598--315645	22	2.2	22	81	7	53	47	12	6	33	1.66
317971--318000	15	2.0	15	93	0	51	40	30	3	26	1.72
322506--322530	2	12.5	2	100	0	50	0	48	0	52	1.00
322532--322556	2	12.5	2	100	0	50	48	0	0	52	1.00
322644--322732	3	29.7	3	93	0	142	4	33	0	61	1.16
323189--323222	6	5.7	6	92	0	50	23	17	44	14	1.86
325320--325358	16	2.4	16	82	0	51	23	30	15	30	1.95
325437--325489	27	2.0	26	82	10	63	45	1	3	49	1.31
325493--325538	19	2.5	19	82	3	58	32	6	0	60	1.22
325522--325560	14	2.7	14	88	11	53	35	2	5	56	1.35
325482--325625	71	2.0	70	89	9	222	35	4	2	57	1.32
325564--325609	19	2.5	20	82	13	62	34	6	0	58	1.24
325494--325609	37	3.2	36	70	24	109	34	5	2	57	1.34
325589--325625	13	2.7	14	84	15	51	37	2	0	59	1.12
325949--325979	15	2.1	15	93	0	53	29	6	16	48	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328103--328201	27	3.7	26	71	18	78	45	2	1	51	1.19
328202--328257	22	2.6	21	80	2	67	50	3	7	39	1.47
328200--328255	29	2.0	28	86	10	78	53	3	5	37	1.41
328244--328312	19	3.6	19	69	19	63	46	1	5	46	1.35
328263--328334	22	3.2	22	76	18	69	48	2	2	45	1.31
328257--328337	38	2.2	36	84	8	101	45	2	4	46	1.37
328341--328425	22	3.9	22	95	3	145	54	8	1	36	1.38
328264--328388	60	2.1	60	80	5	137	51	4	3	40	1.39
328427--328471	20	2.2	20	84	4	54	44	4	8	42	1.56
328497--328652	33	4.8	32	77	16	160	42	5	6	44	1.53
328515--328572	17	3.5	17	69	21	50	48	5	5	41	1.48
328499--328639	35	4.2	35	80	8	150	43	5	6	44	1.53
328576--328623	17	2.9	17	84	12	64	39	6	6	47	1.54
328532--328673	15	8.9	15	71	23	96	42	4	7	46	1.50
328645--328701	23	2.5	24	72	18	57	43	1	5	49	1.35
328757--328816	9	6.7	9	70	14	52	46	1	8	43	1.43
328538--328867	11	28.7	11	65	20	56	43	4	8	43	1.54
328532--328818	2	137.0	2	63	25	53	43	3	7	45	1.51
328889--328957	36	1.9	37	85	11	99	39	7	10	43	1.66
328983--329046	32	2.1	32	91	5	105	48	3	7	40	1.48
329000--329106	42	2.6	43	89	10	177	51	1	8	38	1.43
328996--329117	24	5.4	22	69	24	69	50	1	8	39	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329418--329509	2	43.5	2	69	14	51	44	5	3	46	1.42
329399--329444	19	2.5	19	86	10	60	36	4	10	47	1.58
329437--329504	20	3.4	20	88	8	111	45	5	2	45	1.42
329591--330289	210	3.3	215	92	1	1111	28	12	8	50	1.69
345913--345963	21	2.5	20	81	12	59	52	1	9	35	1.46
349769--349807	20	1.9	21	89	5	62	23	38	25	12	1.90
349781--349828	22	2.2	23	81	7	55	22	45	20	10	1.81
367278--367321	23	1.9	23	85	0	61	22	15	25	36	1.94
368178--368207	15	2.0	15	100	0	60	13	26	6	53	1.64
372938--372971	2	17.0	2	100	0	68	50	0	0	50	1.00
375809--375838	15	2.0	15	100	0	60	20	13	6	60	1.55
376589--377499	10	92.9	10	73	12	457	21	6	29	42	1.78
376597--376648	8	6.0	8	83	16	68	15	11	34	38	1.83
376589--376657	18	3.8	18	96	0	120	17	11	30	40	1.85
377050--377096	17	2.8	17	75	12	51	21	4	34	40	1.73
377159--377219	31	2.0	31	83	6	79	22	3	29	44	1.69
378178--378489	20	15.2	20	77	8	229	41	20	19	17	1.90
378279--378481	42	4.9	41	92	2	277	39	21	20	18	1.93
378175--378489	84	3.9	81	80	9	304	41	20	19	17	1.90
378585--378665	6	13.5	6	100	0	162	33	50	16	0	1.45
379288--379508	20	10.8	20	78	12	193	19	19	25	35	1.95
379290--379513	42	5.4	42	78	10	205	18	20	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379281--379487	62	3.4	62	82	6	244	19	19	24	37	1.94
379281--379570	20	14.2	20	73	10	169	17	19	24	38	1.93
382379--382524	49	3.1	47	75	14	133	19	4	29	46	1.69
381510--383789	10	230.8	10	72	12	1086	22	4	29	43	1.74
385846--385902	18	3.2	18	89	0	87	12	15	49	22	1.78
388969--389123	64	2.4	65	78	8	165	34	20	19	26	1.96

Tables:   1   2

The End!