Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009138.1 Hibiscus syriacus cultivar Beakdansim tig00112638_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44180

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3020--3059
13
3.1
13
86
10
55
85
2
7
5
0.83
4271--4407
38
3.8
37
73
9
104
37
16
11
33
1.85
4445--4792
75
4.6
75
77
8
287
30
16
12
41
1.85
4443--4772
39
8.8
36
65
10
126
30
16
11
41
1.84
4824--5029
21
11.2
21
61
27
76
23
19
14
42
1.88
4818--5048
36
6.4
36
90
2
347
23
20
14
41
1.89
5125--5319
36
5.4
36
68
10
128
28
19
13
38
1.89
5143--5324
37
5.0
37
68
7
138
29
21
12
37
1.89
5084--5328
74
3.4
72
88
4
354
28
20
13
37
1.90
5650--5712
20
3.2
20
62
20
51
42
12
19
25
1.86
5629--6166
91
6.0
92
84
5
679
37
16
20
24
1.93
7304--7357
18
2.9
18
81
10
65
74
3
12
9
1.20
11095--11146
21
2.5
20
85
11
70
26
5
7
59
1.48
12602--12658
29
2.0
29
86
6
80
63
1
10
24
1.36
14459--14492
17
2.0
17
88
0
50
11
32
50
5
1.63
15774--15910
20
6.8
20
70
9
73
27
23
12
36
1.91
15779--15882
40
2.6
40
87
6
140
28
24
11
35
1.90
15872--15917
20
2.3
20
84
0
65
32
21
10
34
1.88
16444--16509
20
3.3
20
85
2
89
50
18
12
19
1.78
18134--18171
20
1.9
20
100
0
76
36
7
23
31
1.84
18157--18205
20
2.4
21
80
16
59
40
14
18
26
1.89
18332--18409
20
3.9
20
80
5
95
28
17
20
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26110--26176
22
3.0
22
100
0
134
26
26
26
19
1.99
26396--26455
30
2.0
31
86
3
86
35
21
6
36
1.80
26815--26967
68
2.3
67
87
4
209
18
28
26
26
1.98
26947--26989
21
2.0
21
86
0
59
16
25
27
30
1.97
26816--26989
68
2.6
67
84
7
192
18
28
25
27
1.98
33015--33081
22
3.0
22
97
0
125
26
25
26
20
1.99
33301--33360
30
2.0
31
86
3
86
35
21
6
36
1.80
33720--33869
66
2.2
67
86
6
198
18
28
25
27
1.98
33849--33891
21
2.0
21
86
0
59
16
25
27
30
1.97
35205--35245
15
2.7
15
88
3
55
26
4
7
60
1.43
35423--35490
22
2.8
24
82
12
77
42
0
5
51
1.26
42471--42508
20
1.9
20
88
0
58
23
7
21
47
1.77
42882--42996
50
2.4
47
84
7
133
38
18
19
24
1.93

Tables:   1

The End!