Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009139.1 Hibiscus syriacus cultivar Beakdansim tig00112645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80709
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Found at i:10000 original size:19 final size:20
Alignment explanation
Indices: 9978--10020 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
9968 AGCATGTATC
9978 TTCATT-AAAATCATGAATT
1 TTCATTAAAAATCATGAATT
*
9997 TTCATTAAAAATCATGTATT
1 TTCATTAAAAATCATGAATT
10017 TTCA
1 TTCA
10021 AAGGGGTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.44
Consensus pattern (20 bp):
TTCATTAAAAATCATGAATT
Found at i:10381 original size:13 final size:13
Alignment explanation
Indices: 10363--10429 Score: 59
Period size: 13 Copynumber: 5.4 Consensus size: 13
10353 TACCTAAACT
*
10363 TCACCATCTTCCA
1 TCACCATATTCCA
*
10376 TCACCAT-TTTCA
1 TCACCATATTCCA
**
10388 -CACC-TATAACA
1 TCACCATATTCCA
*
10399 TCACCATCTTCCA
1 TCACCATATTCCA
*
10412 TCACCATAGTCCA
1 TCACCATATTCCA
10425 TCACC
1 TCACC
10430 TTCACTTCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
10 1 0.02
11 7 0.16
12 8 0.19
13 27 0.63
ACGTcount: A:0.28, C:0.42, G:0.01, T:0.28
Consensus pattern (13 bp):
TCACCATATTCCA
Found at i:11388 original size:19 final size:20
Alignment explanation
Indices: 11347--11397 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
11337 GAAACCCCTT
*
11347 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
11367 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
11386 TGAAGATACATG
1 TGAAAATACATG
11398 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:15528 original size:19 final size:20
Alignment explanation
Indices: 15487--15537 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
15477 GAAACCCCTT
*
15487 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
15507 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
15526 TGAAGATACATG
1 TGAAAATACATG
15538 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:19635 original size:19 final size:19
Alignment explanation
Indices: 19611--19660 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
19601 GAAACCCCTT
*
19611 TGAAAATACATGATTTTGA
1 TGAAAATACATGATTTTAA
19630 TGAAAATACATGATTTTAA
1 TGAAAATACATGATTTTAA
*
19649 TGAAGATACATG
1 TGAAAATACATG
19661 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.34
Consensus pattern (19 bp):
TGAAAATACATGATTTTAA
Found at i:23785 original size:19 final size:20
Alignment explanation
Indices: 23744--23794 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
23734 GAAACCCCTT
*
23744 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
23764 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
23783 TGAAGATACATG
1 TGAAAATACATG
23795 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:27914 original size:19 final size:20
Alignment explanation
Indices: 27873--27923 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
27863 GAAACCCCTT
*
27873 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
27893 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
27912 TGAAGATACATG
1 TGAAAATACATG
27924 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:32052 original size:19 final size:20
Alignment explanation
Indices: 32011--32061 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
32001 GAAACCCCTT
*
32011 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
32031 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
32050 TGAAGATACATG
1 TGAAAATACATG
32062 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:37125 original size:12 final size:13
Alignment explanation
Indices: 37094--37126 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
37084 TTAGCCAAAA
37094 TTGAAAAGGTATG
1 TTGAAAAGGTATG
37107 TTGAAAAGGTATG
1 TTGAAAAGGTATG
37120 -TGAAAAG
1 TTGAAAAG
37127 TGTTTAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TTGAAAAGGTATG
Found at i:39165 original size:15 final size:15
Alignment explanation
Indices: 39154--39182 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
39144 ACTCAAAAAG
39154 AAGAAAAGCAAAGAA
1 AAGAAAAGCAAAGAA
39169 AAGAAAAG-AAAGAA
1 AAGAAAAGCAAAGAA
39183 GTTGAAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (15 bp):
AAGAAAAGCAAAGAA
Found at i:46293 original size:14 final size:14
Alignment explanation
Indices: 46274--46310 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
46264 TAAGATACTA
46274 TTTCCATCACCATC
1 TTTCCATCACCATC
46288 TTTCCATCACCATC
1 TTTCCATCACCATC
*
46302 ATT-CATCAC
1 TTTCCATCAC
46311 TTTCACGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.35
Consensus pattern (14 bp):
TTTCCATCACCATC
Found at i:46756 original size:11 final size:11
Alignment explanation
Indices: 46736--46766 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
46726 CAAAAGCAAC
*
46736 AAAAAGAGAAA
1 AAAAAAAGAAA
46747 AAAAAAAGAAA
1 AAAAAAAGAAA
46758 AAAAAAAGA
1 AAAAAAAGA
46767 CTTCTATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:48228 original size:22 final size:21
Alignment explanation
Indices: 48202--48245 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
48192 GGCTGCAGAA
*
48202 TTGATGGTCTTGATGGATGAAG
1 TTGATGATCTTGAT-GATGAAG
*
48224 TTGATGATGTTGATGATGAAG
1 TTGATGATCTTGATGATGAAG
48245 T
1 T
48246 GGAGATGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.25, C:0.02, G:0.34, T:0.39
Consensus pattern (21 bp):
TTGATGATCTTGATGATGAAG
Found at i:52647 original size:4 final size:5
Alignment explanation
Indices: 52619--52644 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
52609 ACTCAAAAAG
52619 AAGAA AAGAA AAGAA AAGAA AAGAA A
1 AAGAA AAGAA AAGAA AAGAA AAGAA A
52645 GAAGTTGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:53275 original size:23 final size:23
Alignment explanation
Indices: 53230--53275 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
53220 TTATACCTAT
*
53230 AGATACTTATTTCATATGTTATA
1 AGATACTTATTTCATATGATATA
*
53253 AGATAGTTATTTTCATAT-ATATA
1 AGATACTTA-TTTCATATGATATA
53276 TATATTATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.48
Consensus pattern (23 bp):
AGATACTTATTTCATATGATATA
Found at i:55066 original size:33 final size:33
Alignment explanation
Indices: 55022--55090 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
55012 CATCACCATA
*
55022 TTCCATCACCATATCA-CGCCAATAACATCATCC
1 TTCCATCACCATATCATCACCAATAA-ATCATCC
* * *
55055 TTCCATTACCATTTCATCACCATTAAATCATCC
1 TTCCATCACCATATCATCACCAATAAATCATCC
55088 TTC
1 TTC
55091 ATTCATCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.30, C:0.36, G:0.01, T:0.32
Consensus pattern (33 bp):
TTCCATCACCATATCATCACCAATAAATCATCC
Found at i:60740 original size:33 final size:33
Alignment explanation
Indices: 60661--60764 Score: 95
Period size: 33 Copynumber: 3.1 Consensus size: 33
60651 ATACAATCTG
* *
60661 TCCATCACCATTATCACGCCTATATCATCA-CCATAT
1 TCCATCACCA-TATCACGCCAATAACATCATCC---T
60697 TCCATCACCATATCACGCCAATAACATCATCCT
1 TCCATCACCATATCACGCCAATAACATCATCCT
* * * *
60730 TCCATTACCATTTCATCACCATTAA-ATCATCCT
1 TCCATCACCATATCA-CGCCAATAACATCATCCT
60763 TC
1 TC
60765 ATTCATCAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
33 24 0.40
34 7 0.12
35 17 0.28
36 12 0.20
ACGTcount: A:0.31, C:0.37, G:0.02, T:0.31
Consensus pattern (33 bp):
TCCATCACCATATCACGCCAATAACATCATCCT
Found at i:61719 original size:24 final size:25
Alignment explanation
Indices: 61673--61721 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
61663 ATTTTGTTAA
61673 GGCATCAGAAGAGCCTTACATCAAGT
1 GGCATCAGAAGA-CCTTACATCAAGT
61699 GGCATCAGAAGA-CTTACATCAAG
1 GGCATCAGAAGACCTTACATCAAG
61722 CGGTAATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.48
26 12 0.52
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (25 bp):
GGCATCAGAAGACCTTACATCAAGT
Found at i:61872 original size:27 final size:28
Alignment explanation
Indices: 61830--61892 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
61820 AGAAAATCAG
*
61830 AAAAGAAATTGAAGCACTCCAAAAGAAA
1 AAAAGAAATTGAAGCACTCAAAAAGAAA
* * *
61858 AAAAGAAATT-CAGCATTCAAAAAGAAG
1 AAAAGAAATTGAAGCACTCAAAAAGAAA
61885 AAAAGAAA
1 AAAAGAAA
61893 AGAAAAGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 21 0.68
28 10 0.32
ACGTcount: A:0.63, C:0.11, G:0.14, T:0.11
Consensus pattern (28 bp):
AAAAGAAATTGAAGCACTCAAAAAGAAA
Found at i:69874 original size:24 final size:24
Alignment explanation
Indices: 69847--69897 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
69837 TCTTACTATT
* *
69847 TTATTTCCTTTCTTTCAT-CTTTTC
1 TTATTTCATTACTTT-ATCCTTTTC
69871 TTATTTCATTACTTTATCCTTTTC
1 TTATTTCATTACTTTATCCTTTTC
69895 TTA
1 TTA
69898 ACCTTTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.65
Consensus pattern (24 bp):
TTATTTCATTACTTTATCCTTTTC
Found at i:72127 original size:412 final size:410
Alignment explanation
Indices: 71305--72131 Score: 1611
Period size: 412 Copynumber: 2.0 Consensus size: 410
71295 CCCATCTTTC
71305 GAATGGATTACGGACAGCAAAGGAGGAATCCATTTCATACTCGTTTCATGTGAATGATAAAGTAT
1 GAATGGATTACGGACAGCAAAGGAGGAATCCATTTCATACTCGTTTCATGTGAATGATAAAGTAT
*
71370 GCCTTGTAGCCATTGATGGTGGTAGTTGTGCAAATCTTGCAAGCACATATGGTTGAGAAGTTGGG
66 GCCTTGTAGCCATTGATGATGGTAGTTGTGCAAATCTTGCAAGCACATATGGTTGAGAAGTTGGG
71435 GCTTATAACATTCAAACATCCCAGTCCATATGTTTTGCAAGGATTAAATGAAGATGAAGAGTTAG
131 GCTTATAACATTCAAACATCCCAGTCCATATGTTTTGCAAGGATTAAATGAAGATGAAGAGTTAG
71500 AAGTCATGGAGCAAGTACGTGTGTCATTTTCAATTGGGGGATATAAAGATGAAGTTTTGTGTGAT
196 AAGTCATGGAGCAAGTACGTGTGTCATTTTCAATTGGGGGATATAAAGATGAAGTTTTGTGTGAT
71565 GTTGTTTCTATGAATTCAAGCCATCTACTCCTTGGACGTCATTGGCAGTTCGATAAACGAGCATT
261 GTTGTTTCTATGAATTCAAGCCATCTACTCCTTGGACGTCATTGGCAGTTCGATAAACGAGCATT
71630 CTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTCCAA
326 CTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTCCAA
71695 TGTGCCCAAATCAAGTCCAT
391 TGTGCCCAAATCAAGTCCAT
71715 GAATGGATTACGGACAGCAAAGGAGGAATCCATTTCATACTCGTTTTCATGTGAATGATAAAGTA
1 GAATGGATTACGGACAGCAAAGGAGGAATCCATTTCATACTCG-TTTCATGTGAATGATAAAGTA
71780 TGCCTTGTAGCCATTGATGATGGTAGTTGTGCAAATCTTGCAAGCACATACATGGTTGAGAAGTT
65 TGCCTTGTAGCCATTGATGATGGTAGTTGTGCAAATCTTGCAAGCACAT--ATGGTTGAGAAGTT
71845 GGGGCTTATAACATTCAAACATCCCAGTCCATATGTTTTGCAAGGATTAAATGAAGATGAAGAGT
128 GGGGCTTATAACATTCAAACATCCCAGTCCATATGTTTTGCAAGGATTAAATGAAGATGAAGAGT
71910 TAGAAGTCATGGAGCAAGTACGTGTGTCATTTTCAATTGGGGGATATAAAGATGAAGTTTTGTGT
193 TAGAAGTCATGGAGCAAGTACGTGTGTCATTTTCAATTGGGGGATATAAAGATGAAGTTTTGTGT
71975 GATG-TGTTTCTATGAATTCAAGCCATCTACTCCTTGGACGTCATTGGCAGTTCGATAAACGAGC
258 GATGTTGTTTCTATGAATTCAAGCCATCTACTCCTTGGACGTCATTGGCAGTTCGATAAACGAGC
72039 ATTCTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTC
323 ATTCTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTC
72104 CAATGTGCCCAAATCAAGTCCAT
388 CAATGTGCCCAAATCAAGTCCAT
72127 GAATG
1 GAATG
72132 CCAAGTTATC
Statistics
Matches: 413, Mismatches: 1, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
410 43 0.10
411 69 0.17
412 153 0.37
413 148 0.36
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (410 bp):
GAATGGATTACGGACAGCAAAGGAGGAATCCATTTCATACTCGTTTCATGTGAATGATAAAGTAT
GCCTTGTAGCCATTGATGATGGTAGTTGTGCAAATCTTGCAAGCACATATGGTTGAGAAGTTGGG
GCTTATAACATTCAAACATCCCAGTCCATATGTTTTGCAAGGATTAAATGAAGATGAAGAGTTAG
AAGTCATGGAGCAAGTACGTGTGTCATTTTCAATTGGGGGATATAAAGATGAAGTTTTGTGTGAT
GTTGTTTCTATGAATTCAAGCCATCTACTCCTTGGACGTCATTGGCAGTTCGATAAACGAGCATT
CTATGATGGGTTCTCCAACAAATATTCATTCAAACACCAAGGGAGAAAGATCGTGTTGGTTCCAA
TGTGCCCAAATCAAGTCCAT
Found at i:75017 original size:19 final size:20
Alignment explanation
Indices: 74989--75036 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
74979 CTTGATAACA
74989 TTCC-TTTCCATTT-CTTCT
1 TTCCATTTCCATTTACTTCT
*
75007 TTCCATTTCCATTTACTTTT
1 TTCCATTTCCATTTACTTCT
75027 TTCTCATTTC
1 TTC-CATTTC
75037 TTAATTATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 4 0.15
19 9 0.35
20 7 0.27
21 6 0.23
ACGTcount: A:0.10, C:0.29, G:0.00, T:0.60
Consensus pattern (20 bp):
TTCCATTTCCATTTACTTCT
Found at i:75440 original size:63 final size:65
Alignment explanation
Indices: 75341--75462 Score: 203
Period size: 63 Copynumber: 1.9 Consensus size: 65
75331 TGACCAGCCC
75341 CCATGTGCCTTGCATGTGGATCATTTAGGCGCCAAGATGAAGAG-T-TCTCCCTATTCGACCAAG
1 CCATGTGCCTTGCATGTGGATCATTTAGGCGCCAAGATGAAGAGCTCTCTCCCTATTCGACCAAG
* * *
75404 CCATGTGCCTTGCATGTGGTTTATTTAGGTGCCAAGATGAAGAGCTCTCTCCCTATTCG
1 CCATGTGCCTTGCATGTGGATCATTTAGGCGCCAAGATGAAGAGCTCTCTCCCTATTCG
75463 GGCAAGCATC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 41 0.76
64 1 0.02
65 12 0.22
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (65 bp):
CCATGTGCCTTGCATGTGGATCATTTAGGCGCCAAGATGAAGAGCTCTCTCCCTATTCGACCAAG
Found at i:76302 original size:5 final size:5
Alignment explanation
Indices: 76292--76320 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
76282 GAGCAAGAAA
76292 AAAAG AAAAG AAAAG AAAAG -AAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
76321 TTGGAAGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:78962 original size:11 final size:13
Alignment explanation
Indices: 78930--78959 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
78920 TGGCCAAAGA
78930 TGAAAAGGTATGT
1 TGAAAAGGTATGT
78943 TGAAAAGGTATG-
1 TGAAAAGGTATGT
78955 TGAAA
1 TGAAA
78960 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Done.