Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009142.1 Hibiscus syriacus cultivar Beakdansim tig00112653_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49462

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3530--3579
19
2.6
19
84
12
66
36
16
6
42
1.72
3530--3577
20
2.5
19
89
3
69
35
14
6
43
1.71
9889--9939
20
2.6
20
90
3
77
35
15
5
43
1.71
10850--10918
13
5.5
13
71
10
54
27
2
42
27
1.70
11259--11309
19
2.6
20
93
3
86
45
5
13
35
1.68
20022--20053
15
2.1
16
94
5
57
25
18
15
40
1.90
20886--20919
13
2.8
12
86
8
50
2
11
2
82
0.89
20886--20919
6
5.5
6
89
6
50
2
11
2
82
0.89
20955--20998
19
2.4
18
82
10
54
2
9
6
81
0.94
24907--24947
16
2.5
17
76
11
50
65
2
12
19
1.36
25164--25209
21
2.1
22
84
11
60
6
8
2
82
0.91
28253--28295
14
3.1
14
80
12
52
0
13
2
83
0.74
28716--28784
13
5.5
13
71
10
54
28
2
40
27
1.71
33799--33843
11
4.1
11
85
5
56
15
11
2
71
1.24
34159--34226
20
3.2
20
75
15
66
82
7
8
1
0.91
37888--37987
45
2.4
41
80
16
107
34
2
14
50
1.54
38379--38419
21
1.9
21
95
5
73
12
12
4
70
1.31
38376--38415
11
3.8
10
83
9
53
12
12
2
72
1.22
41172--41255
36
2.3
35
87
6
114
33
34
3
28
1.75
41225--41272
24
2.0
24
84
8
62
37
35
4
22
1.74
45598--45708
35
3.2
36
87
6
156
32
36
3
27
1.74
49389--49433
12
3.7
12
84
3
63
86
8
4
0
0.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49389--49440
13
4.1
13
80
14
56
82
11
5
0
0.82
49388--49440
24
2.2
23
77
12
54
81
13
5
0
0.86

Tables:   1

The End!