genome.fa.s9143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009143.1 Hibiscus syriacus cultivar Beakdansim tig00112655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45249

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7705--8290	84	7.0	84	75	5	537	25	19	23	31	1.98
7655--8064	165	2.5	165	80	6	427	24	20	23	31	1.98
7705--8290	249	2.4	249	88	0	857	25	19	23	31	1.98
11357--11400	23	1.9	23	90	0	70	20	22	25	31	1.98
14180--14231	20	2.6	19	84	6	59	32	15	21	30	1.94
14705--14737	17	1.9	18	88	11	52	42	3	12	42	1.57
15121--15283	21	7.6	21	75	10	116	23	15	22	39	1.92
15227--15302	23	3.4	23	85	5	111	17	19	26	36	1.94
16593--16637	23	1.9	24	81	4	56	33	22	20	24	1.97
37042--37090	22	2.2	22	82	7	55	57	0	2	40	1.10
37040--37109	31	2.2	30	85	10	86	57	0	1	41	1.08
37488--37540	21	2.5	21	81	6	72	20	26	18	33	1.96
37530--37580	21	2.5	21	83	3	68	39	19	23	17	1.92
37567--37703	40	3.4	41	76	3	134	35	24	16	24	1.95
37571--37684	20	5.7	20	77	6	95	32	26	16	24	1.96
37881--37921	22	2.0	21	85	9	57	24	41	12	21	1.87
38176--38234	20	3.0	20	87	0	73	15	18	22	44	1.87
38369--38423	25	2.2	24	78	15	58	20	9	18	52	1.71
39535--39582	18	2.7	18	93	0	87	27	45	12	14	1.81
40095--40161	20	3.4	20	77	2	64	37	20	23	17	1.94
40448--40497	20	2.5	20	83	6	66	42	22	22	14	1.88
40510--40569	19	3.2	19	83	9	86	50	21	18	10	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40483--40569	38	2.6	33	84	14	99	48	22	18	10	1.78
41760--41795	14	2.6	14	90	0	54	36	0	16	47	1.47
41932--41995	19	3.7	18	78	17	82	46	18	20	14	1.83
42022--42109	20	4.4	20	75	11	81	17	20	22	39	1.92
42021--42109	40	2.2	40	82	4	108	17	20	22	39	1.92
42322--42371	20	2.5	20	80	0	73	22	18	22	38	1.94
43749--43787	14	2.8	14	84	0	51	35	0	17	46	1.49
43915--43963	19	2.6	19	96	0	89	51	16	18	14	1.77
44286--44353	21	3.3	21	76	12	70	19	17	22	41	1.91

Tables:   1

The End!