genome.fa.s9144.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009144.1 Hibiscus syriacus cultivar Beakdansim tig00112656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51579

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13720--13772	21	2.5	21	81	6	72	20	26	18	33	1.96
13762--13812	21	2.5	21	83	3	68	39	19	23	17	1.92
13799--13936	41	3.4	41	77	2	143	35	24	15	23	1.94
13803--13916	20	5.7	20	77	6	95	32	26	16	24	1.96
14114--14154	22	2.0	21	85	9	57	24	41	12	21	1.87
14410--14468	20	3.0	20	87	0	73	15	18	22	44	1.87
14605--14659	25	2.2	24	78	15	58	20	9	18	52	1.71
15787--15834	18	2.7	18	93	0	87	27	45	12	14	1.81
16351--16417	20	3.4	20	77	2	64	37	20	23	17	1.94
16689--16741	20	2.7	20	87	0	70	33	28	13	24	1.93
16695--16781	20	4.4	20	80	7	79	37	25	19	17	1.93
16715--16849	19	7.3	19	76	16	104	43	24	20	11	1.85
16754--16849	33	2.7	36	88	7	135	46	23	18	10	1.80
18054--18089	14	2.6	14	90	0	54	36	0	16	47	1.47
18227--18292	19	3.7	19	80	15	88	48	18	19	13	1.81
18319--18406	20	4.4	20	75	11	81	17	20	22	39	1.92
18318--18406	40	2.2	40	82	4	108	17	20	22	39	1.92
18620--18669	20	2.5	20	80	0	73	22	18	22	38	1.94
18944--18977	12	2.9	12	86	4	52	17	41	5	35	1.74
20072--20110	14	2.8	14	84	0	51	35	0	17	46	1.49
20229--20306	19	4.7	16	78	18	56	47	19	20	12	1.82
20239--20306	19	3.8	19	81	14	92	48	17	20	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20615--20664	20	2.5	20	80	0	73	22	18	22	38	1.94
20939--20972	12	2.9	12	86	4	52	17	41	5	35	1.74
22067--22105	14	2.8	14	84	0	51	35	0	17	46	1.49
22201--22249	19	2.6	19	96	0	89	51	16	18	14	1.77
22576--22667	20	4.6	20	73	2	76	20	18	21	39	1.93
22652--22703	20	2.5	21	81	3	61	21	21	17	40	1.91
22900--22933	12	2.9	12	86	4	52	17	41	5	35	1.74
24028--24066	14	2.8	14	84	0	51	35	0	17	46	1.49
24195--24262	19	3.8	19	79	14	83	48	16	20	14	1.81
24289--24376	20	4.4	20	80	11	117	15	22	23	37	1.93
24269--24356	40	2.4	37	85	11	110	15	21	21	40	1.90
24590--24681	20	4.6	20	73	2	76	20	18	21	39	1.93
26042--26080	14	2.8	14	84	0	51	35	0	17	46	1.49
26176--26224	19	2.6	19	96	0	89	51	16	18	14	1.77
26262--26337	20	3.8	20	72	6	73	17	19	21	42	1.90
26250--26353	40	2.9	34	76	15	109	15	22	22	40	1.91
26551--26642	20	4.6	20	73	2	76	20	18	21	39	1.93
26627--26678	20	2.5	21	87	3	70	21	23	17	38	1.93
26875--26908	12	2.9	12	86	4	52	17	41	5	35	1.74
28002--28040	14	2.8	14	84	0	51	35	0	17	46	1.49
28169--28236	19	3.8	19	79	14	83	48	16	20	14	1.81
28255--28339	20	4.2	20	78	11	102	17	21	21	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28506--28618	20	5.6	20	71	8	77	21	19	20	38	1.93
28582--28654	21	3.5	21	88	1	103	21	23	15	39	1.91
29972--30010	14	2.8	14	84	0	51	35	0	17	46	1.49
30147--30195	19	2.6	19	93	0	80	55	16	12	16	1.70
30233--30308	20	3.8	20	71	13	66	18	19	19	42	1.90
30522--30634	20	5.6	20	71	8	77	21	19	20	38	1.93
30598--30670	21	3.5	21	88	1	103	21	23	15	39	1.91
31988--32026	14	2.8	14	84	0	51	35	0	17	46	1.49
32163--32211	19	2.6	19	93	0	80	55	16	12	16	1.70
32249--32324	20	3.8	20	71	13	66	18	19	19	42	1.90
32538--32629	20	4.6	20	73	2	76	20	18	21	39	1.93
32614--32665	20	2.5	21	87	3	70	21	23	17	38	1.93
33678--33708	14	2.2	14	94	0	53	74	0	25	0	0.82
33679--33711	11	3.0	11	95	0	57	78	0	21	0	0.75
36003--36161	33	4.8	33	90	3	232	42	18	22	16	1.89
36222--36286	19	3.7	19	70	19	68	13	23	18	44	1.85
36173--36286	33	3.4	32	79	6	129	16	20	18	44	1.87
36393--36429	14	2.6	15	87	12	60	48	21	0	29	1.50
37782--37848	21	3.2	21	68	4	55	19	20	35	23	1.95
38120--38301	90	2.0	88	90	7	285	47	18	12	21	1.81
39976--40035	20	3.0	20	82	0	75	46	18	21	13	1.83
40608--40719	20	5.6	20	79	4	64	22	20	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40626--40715	41	2.2	40	84	2	108	21	21	15	42	1.89
40687--40857	41	4.2	41	72	8	150	30	18	21	29	1.97
40716--40771	20	2.7	21	80	5	69	42	16	21	19	1.89
40709--40781	21	3.5	21	79	3	76	36	17	21	23	1.94
40791--40842	20	2.5	21	87	3	70	21	23	17	38	1.93
40832--40884	21	2.5	22	81	6	74	33	18	26	20	1.96
42062--42100	20	2.1	19	85	9	53	56	0	0	43	0.99
43890--43972	43	1.9	43	90	0	130	30	31	18	20	1.96
43933--44545	240	2.4	248	81	8	670	32	22	18	26	1.97
44585--44810	84	2.7	82	82	4	267	32	24	19	23	1.98
46034--46065	2	16.0	2	93	0	55	46	3	0	50	1.17
47144--47198	25	2.2	25	90	0	83	30	18	23	27	1.97
49392--49491	37	2.8	37	93	4	177	35	16	11	38	1.83
50882--50933	16	3.3	15	81	5	50	5	17	32	44	1.72
50882--50919	15	2.4	16	86	4	51	5	18	31	44	1.72

Tables:   1

The End!