Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009146.1 Hibiscus syriacus cultivar Beakdansim tig00112659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62096
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Found at i:2044 original size:14 final size:14
Alignment explanation
Indices: 2025--2054 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
2015 AAATCAGAGG
2025 GGGCCTAGGGCTCA
1 GGGCCTAGGGCTCA
2039 GGGCCTAGGGCTCA
1 GGGCCTAGGGCTCA
2053 GG
1 GG
2055 ACCTTTTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (14 bp):
GGGCCTAGGGCTCA
Found at i:7078 original size:16 final size:17
Alignment explanation
Indices: 7038--7085 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
7028 TATTTATGAG
7038 GGAATTGGAATCTGTGAA
1 GGAATTGGAATCTGT-AA
* *
7056 CGAATTGAAATCTGT-A
1 GGAATTGGAATCTGTAA
7072 GGAATTGGAATCTG
1 GGAATTGGAATCTG
7086 AATCTGAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 13 0.50
18 13 0.50
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (17 bp):
GGAATTGGAATCTGTAA
Found at i:7797 original size:98 final size:96
Alignment explanation
Indices: 7621--7813 Score: 237
Period size: 97 Copynumber: 2.0 Consensus size: 96
7611 CCTAAACCTG
*
7621 AACCCGACCCGAATATCACACTTAAAAAACCCAACCCGACCCGTACCCAAAATTTAAAAAAAATC
1 AACCCGACCCGAATATCACACTTAAAAAACCCAACCCGACCCGTACCCAAAATTTAAAAAAAACC
* *
7686 CGACCCAATCCCGAATTTTTTTTTAAAAAAAA
66 CGACCCAACCCCGAA-ATTTTTTTAAAAAAAA
* * * * * *
7718 AACCCGACCCGAATATCACACTTACAAAAACTCGACCCTATCCGAATA-TCAAACTTT-AAAAAA
1 AACCCGACCCGAATATCACACTTA-AAAAACCCAACCCGACCCG--TACCCAAAATTTAAAAAAA
* *
7781 CCCCGACCCGACCCCGAAATTTTTTTAAAAAAA
63 ACCCGACCCAACCCCGAAATTTTTTTAAAAAAA
7814 TCCTACCCGA
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
97 38 0.46
98 35 0.43
99 7 0.09
100 2 0.02
ACGTcount: A:0.43, C:0.31, G:0.07, T:0.20
Consensus pattern (96 bp):
AACCCGACCCGAATATCACACTTAAAAAACCCAACCCGACCCGTACCCAAAATTTAAAAAAAACC
CGACCCAACCCCGAAATTTTTTTAAAAAAAA
Found at i:11474 original size:2 final size:2
Alignment explanation
Indices: 11467--11495 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11457 TCTCTGTCTT
11467 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11496 TTGAATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13517 original size:18 final size:18
Alignment explanation
Indices: 13496--13530 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13486 TAAGATTATT
13496 GACGAGAAAAAGATTACA
1 GACGAGAAAAAGATTACA
* *
13514 GACGTGAATAAGATTAC
1 GACGAGAAAAAGATTAC
13531 TGAGAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.11, G:0.23, T:0.17
Consensus pattern (18 bp):
GACGAGAAAAAGATTACA
Found at i:13729 original size:41 final size:41
Alignment explanation
Indices: 13640--13743 Score: 108
Period size: 41 Copynumber: 2.6 Consensus size: 41
13630 TAAATTGTAC
* *
13640 TTATTATATATATTTTTTTAACAAGTTGAATTCTACTATAAT
1 TTATT-TATATATTTTTTTAAAAAGTTGAATTCTACTAAAAT
* *
13682 TAATTTATATATTTTCTTTAAAAATTTTGAATTC-A-TAAAAT
1 TTATTTATATATTTT-TTTAAAAA-GTTGAATTCTACTAAAAT
*
13723 TTATTTA-AT-TTTTTTTCAAAA
1 TTATTTATATATTTTTTTAAAAA
13744 CTGAAAAGAT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
38 7 0.13
39 4 0.07
40 2 0.04
41 21 0.39
42 12 0.22
43 8 0.15
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.54
Consensus pattern (41 bp):
TTATTTATATATTTTTTTAAAAAGTTGAATTCTACTAAAAT
Found at i:14850 original size:8 final size:8
Alignment explanation
Indices: 14837--14875 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
14827 TGTTAGTATT
14837 TTATTTAA
1 TTATTTAA
14845 TTATTTAA
1 TTATTTAA
14853 TT-TTT--
1 TTATTTAA
14858 TTATTTAA
1 TTATTTAA
14866 TTATTTAA
1 TTATTTAA
14874 TT
1 TT
14876 TTTTTGCAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 2 0.07
6 3 0.11
7 3 0.11
8 20 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
TTATTTAA
Found at i:14860 original size:21 final size:21
Alignment explanation
Indices: 14835--14880 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
14825 TTTGTTAGTA
14835 TTTTATTTAATTATTTAATTT
1 TTTTATTTAATTATTTAATTT
14856 TTTTATTTAATTATTTAATTT
1 TTTTATTTAATTATTTAATTT
14877 TTTT
1 TTTT
14881 GCAGTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTATTTAATTATTTAATTT
Found at i:15147 original size:13 final size:13
Alignment explanation
Indices: 15131--15163 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
15121 ATAACTGTAA
15131 AAAATAAAATAAT
1 AAAATAAAATAAT
15144 AAAATAAAATAAT
1 AAAATAAAATAAT
15157 AAAATAA
1 AAAATAA
15164 TTAATACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAATAAAATAAT
Found at i:21574 original size:18 final size:18
Alignment explanation
Indices: 21525--21575 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
21515 TTTTTATTTT
* *
21525 ATTTGGATATAATT-TTA
1 ATTTGGAAATAATTCTGA
*
21542 ATTAGAGAAAT-ATTCTGA
1 ATTTG-GAAATAATTCTGA
21560 ATTTGGAAATAATTCT
1 ATTTGGAAATAATTCT
21576 CTACCTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.43
Consensus pattern (18 bp):
ATTTGGAAATAATTCTGA
Found at i:31120 original size:35 final size:35
Alignment explanation
Indices: 31080--31149 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
31070 GACGTGCGAG
* *
31080 CATGTCTATATGTTAATTTTTTTAGTTTAAAATAT
1 CATGTCTAAATGTTAATTTTTTTAATTTAAAATAT
31115 CATGTCTAAATGTTAATTTTTTTAATTTAAAATAT
1 CATGTCTAAATGTTAATTTTTTTAATTTAAAATAT
31150 TATATTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.53
Consensus pattern (35 bp):
CATGTCTAAATGTTAATTTTTTTAATTTAAAATAT
Found at i:31160 original size:35 final size:35
Alignment explanation
Indices: 31084--31160 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
31074 TGCGAGCATG
* * *
31084 TCTATATGTTAATTTTTTTAGTTTAAAATATCATG
1 TCTAAATGTTAATTTTTTTAATTTAAAATATCATA
*
31119 TCTAAATGTTAATTTTTTTAATTTAAAATATTATA
1 TCTAAATGTTAATTTTTTTAATTTAAAATATCATA
*
31154 TTTAAAT
1 TCTAAAT
31161 TGATACACAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (35 bp):
TCTAAATGTTAATTTTTTTAATTTAAAATATCATA
Found at i:45600 original size:2 final size:2
Alignment explanation
Indices: 45593--45629 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
45583 ATCTAAAATG
45593 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45630 AATTTAAGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:45935 original size:20 final size:20
Alignment explanation
Indices: 45841--46209 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
45831 GATTTTCCAT
* ** *
45841 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
45861 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
45881 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
45901 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
45921 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
45941 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
45961 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
45981 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
46001 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
46021 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
46041 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
46061 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
46081 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
46101 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
46121 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
46141 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
46161 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
46181 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
46201 AATCACAAC
1 AATCGCAAC
46210 ACTGAAATTT
Statistics
Matches: 305, Mismatches: 36, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
19 3 0.01
20 299 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:46920 original size:24 final size:24
Alignment explanation
Indices: 46881--46927 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
46871 AAATTTGGTC
46881 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
46905 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
46928 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:47119 original size:12 final size:12
Alignment explanation
Indices: 47102--47126 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47092 ATATAATCCT
47102 GAAGAAGAAAAA
1 GAAGAAGAAAAA
47114 GAAGAAGAAAAA
1 GAAGAAGAAAAA
47126 G
1 G
47127 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:49453 original size:19 final size:19
Alignment explanation
Indices: 49431--49756 Score: 405
Period size: 19 Copynumber: 18.4 Consensus size: 19
49421 CGGAAAATAC
*
49431 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
49450 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
49464 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
49484 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
49498 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
49517 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
49536 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
49550 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
49569 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
49588 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
49602 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
49621 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
49640 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
49659 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
49678 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
49697 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
49711 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
49730 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
49749 AATCGCAA
1 AATCGCAA
49757 CGAGATAATC
Statistics
Matches: 269, Mismatches: 12, Indels: 52
0.81 0.04 0.16
Matches are distributed among these distances:
14 50 0.19
15 3 0.01
16 13 0.05
17 12 0.04
18 4 0.01
19 174 0.65
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:49518 original size:33 final size:34
Alignment explanation
Indices: 49431--49756 Score: 321
Period size: 33 Copynumber: 9.2 Consensus size: 34
49421 CGGAAAATAC
* *
49431 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
49464 AATCGCAATGCGGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGATGAA
49498 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
49536 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
49569 AATCGCAATGCGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
49602 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
49640 AATCGCAATACGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
49678 AATCGCAATGCGAAATGAAAATCGCAACGA--AA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
49710 GAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 -AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
49749 AATCGCAA
1 AATCGCAA
49757 CGAGATAATC
Statistics
Matches: 257, Mismatches: 12, Indels: 43
0.82 0.04 0.14
Matches are distributed among these distances:
32 2 0.01
33 111 0.43
34 32 0.12
35 9 0.04
36 6 0.02
37 4 0.02
38 91 0.35
39 2 0.01
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCGCAACGATGAA
Found at i:49692 original size:161 final size:157
Alignment explanation
Indices: 49459--49778 Score: 552
Period size: 161 Copynumber: 2.0 Consensus size: 157
49449 AAATCCCAAC
*
49459 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCA
*
49524 ATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
66 ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
49589 ATCGCAACGAGAGAATCGCAATGCGAA
131 ATCGCAACGAGAGAATCGCAATGCGAA
*
49616 ATGAAAATCGCAATGC-GAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAAATGAAAA
1 ATGAAAATCGCAATGCGGAAATGAAAATCGC-A-ACG--A-GAAAATCGCAATGCGAAATGAAAA
49680 TCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAA
61 TCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAA
*
49745 TGAAAATCGCAACGAGATAATCGCAATGCGAA
126 TGAAAATCGCAACGAGAGAATCGCAATGCGAA
49777 AT
1 AT
49779 TATAAACGCA
Statistics
Matches: 154, Mismatches: 4, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
156 13 0.08
157 17 0.11
158 3 0.02
160 1 0.01
161 120 0.78
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (157 bp):
ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCA
ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
ATCGCAACGAGAGAATCGCAATGCGAA
Found at i:49794 original size:52 final size:52
Alignment explanation
Indices: 49459--49778 Score: 550
Period size: 52 Copynumber: 6.0 Consensus size: 52
49449 AAATCCCAAC
49459 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
49512 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
49564 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
49616 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
*
49673 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
49725 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
49777 AT
1 AT
49779 TATAAACGCA
Statistics
Matches: 255, Mismatches: 7, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
52 184 0.72
53 18 0.07
54 3 0.01
55 3 0.01
56 2 0.01
57 45 0.18
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:49894 original size:19 final size:19
Alignment explanation
Indices: 49785--49886 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
49775 AAATTATAAA
49785 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
49804 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
49824 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
49840 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
49857 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
49876 CGCATTGCGAT
1 CGCATTGCGAT
49887 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:50012 original size:14 final size:14
Alignment explanation
Indices: 49993--50029 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
49983 CATCAATTAC
49993 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
50007 ACAAATCATCTTTT
1 ACAAATCAACTTTT
50021 ACAAATCAA
1 ACAAATCAA
50030 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:50041 original size:12 final size:12
Alignment explanation
Indices: 50024--50096 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
50014 ATCTTTTACA
50024 AATCAATTAAAC
1 AATCAATTAAAC
*
50036 AATCAA--AAATTG
1 AATCAATTAAA--C
**
50048 AATCAACTTTTAC
1 AATCAA-TTAAAC
50061 AAATCAATTAAAC
1 A-ATCAATTAAAC
*
50074 AATCAA-AAAAC
1 AATCAATTAAAC
50085 AATCAATTAAAC
1 AATCAATTAAAC
50097 TATTGAATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
10 3 0.07
11 10 0.22
12 21 0.46
13 6 0.13
14 5 0.11
15 1 0.02
ACGTcount: A:0.58, C:0.16, G:0.01, T:0.25
Consensus pattern (12 bp):
AATCAATTAAAC
Found at i:50058 original size:38 final size:38
Alignment explanation
Indices: 50010--50082 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
50000 AACTTTTACA
*
50010 AATCATCTTTTACAAATCAATTAAACAATCAAAAATTG
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
50048 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
50083 ACAATCAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.29
Consensus pattern (38 bp):
AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
Found at i:51931 original size:19 final size:19
Alignment explanation
Indices: 51891--52025 Score: 137
Period size: 19 Copynumber: 7.6 Consensus size: 19
51881 TAGTTTACTT
* *
51891 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
51911 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
51930 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
51949 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
51963 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
51982 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
51996 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
52015 TCGCAATGCGA
1 TCGCAACGCGA
52026 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:51966 original size:14 final size:14
Alignment explanation
Indices: 51947--52003 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
51937 GCGAAATGAA
*
51947 AATCGCAACGACAG
1 AATCGCAACGAAAG
51961 AATCGCAACGCGAAATG
1 AATCGCAA--CGAAA-G
51978 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
51994 AATCGCAACG
1 AATCGCAACG
52004 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.25, G:0.21, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:51970 original size:33 final size:33
Alignment explanation
Indices: 51928--52020 Score: 177
Period size: 33 Copynumber: 2.8 Consensus size: 33
51918 GCGAAACCAA
*
51928 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
51961 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
51994 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
52021 TGCGATTTTG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:52017 original size:52 final size:54
Alignment explanation
Indices: 51891--52025 Score: 131
Period size: 52 Copynumber: 2.5 Consensus size: 54
51881 TAGTTTACTT
*
51891 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAA
1 TCGCAAC-CGAAA-TGAAAATCGCAACGCGAAACCAAAATCGCAAC-CGAAATG-AAA
* **
51949 TCGCAA-CGACA-G--AATCGCAACGCGAAATGAAAATCGCAA-CGAAA-G-AA
1 TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
*
51996 TCGCAACGCGAAATGAAAATCGCAATGCGA
1 TCGCAAC-CGAAATGAAAATCGCAACGCGA
52026 TTTTGGTTTC
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
47 8 0.12
49 5 0.08
50 6 0.09
52 37 0.56
56 4 0.06
58 6 0.09
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (54 bp):
TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
Found at i:52043 original size:19 final size:19
Alignment explanation
Indices: 52021--52097 Score: 83
Period size: 19 Copynumber: 4.3 Consensus size: 19
52011 AAAATCGCAA
52021 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
52040 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
52054 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
52073 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
52093 TGCGA
1 TGCGA
52098 AAGTAAACTA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
14 11 0.23
15 1 0.02
16 1 0.02
17 1 0.02
18 1 0.02
19 20 0.42
20 13 0.27
ACGTcount: A:0.09, C:0.16, G:0.30, T:0.45
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:52422 original size:91 final size:93
Alignment explanation
Indices: 52141--52517 Score: 717
Period size: 91 Copynumber: 4.1 Consensus size: 93
52131 TTGAATGGAT
52141 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
52206 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
52234 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
52299 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
52327 -AATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
52390 AGTTTAGCAGAATTGGCAGCAA-CGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
52417 AAATTTACTTTCAACCAAAAGACAAAAC-AAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
52481 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
52509 AAATTTACT
1 AAATTTACT
52518 AAGCAATCTA
Statistics
Matches: 280, Mismatches: 1, Indels: 7
0.97 0.00 0.02
Matches are distributed among these distances:
90 15 0.05
91 121 0.43
92 51 0.18
93 93 0.33
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:54221 original size:14 final size:14
Alignment explanation
Indices: 54202--54291 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
54192 TTGAAATGAA
54202 AATCGCAACGAGAG
1 AATCGCAACGAGAG
54216 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
54233 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
54249 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
54268 AATCGCAACGAGAG
1 AATCGCAACGAGAG
54282 AATCGCAACG
1 AATCGCAACG
54292 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:54239 original size:33 final size:33
Alignment explanation
Indices: 54194--54308 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
54184 TCTTTTGGTT
54194 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
54227 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
54260 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
54293 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
54309 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:54240 original size:19 final size:18
Alignment explanation
Indices: 54201--54313 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
54191 GTTGAAATGA
54201 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
54216 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
54233 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
54249 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
54266 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
54282 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
54299 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
54314 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:54344 original size:14 final size:14
Alignment explanation
Indices: 54325--54379 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
54315 TTTGGTTTCG
54325 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
54339 CGTTGCGATTTCCATTTCG
1 CGTTGCGA-TT-C---TCT
54358 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
54372 CGTTGCGA
1 CGTTGCGA
54380 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 2 0.06
16 1 0.03
17 1 0.03
18 2 0.06
19 10 0.29
ACGTcount: A:0.09, C:0.27, G:0.24, T:0.40
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:54542 original size:33 final size:33
Alignment explanation
Indices: 54500--54570 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
54490 AATACTAACT
*
54500 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
54533 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
54566 TGAAA
1 TGAAA
54571 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:54803 original size:21 final size:22
Alignment explanation
Indices: 54752--54805 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
54742 TGGTTGTGAG
**
54752 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
54774 GGAAATCTTCGGAGAT-GGGAC
1 GGATTTCTTCGGAGATGGGGAC
54795 GGATTTCTTCG
1 GGATTTCTTCG
54806 CCGTAGAGAG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.20, C:0.17, G:0.39, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:54975 original size:20 final size:20
Alignment explanation
Indices: 54950--55134 Score: 158
Period size: 20 Copynumber: 9.7 Consensus size: 20
54940 CTTTAAATAT
54950 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
54970 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
54992 -TCG-TGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
55010 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
55030 CGCATTGCGA-TT-----TA
1 CGCGTTGCGATTTACGGATA
55044 --CGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
55062 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
55082 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
55102 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
55122 CGCGTTGCGATTT
1 CGCGTTGCGATTT
55135 TGGAAAATCG
Statistics
Matches: 134, Mismatches: 17, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
12 7 0.05
13 2 0.01
14 2 0.01
18 4 0.03
19 9 0.07
20 99 0.74
21 9 0.07
22 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:55057 original size:52 final size:52
Alignment explanation
Indices: 54995--55095 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
54985 TGTATTATCG
*
54995 TGCGATTTACGGATACGCGTTGCGATATACGGATACGCATTGCGATTTACGT
1 TGCGATTTACGGATACACGTTGCGATATACGGATACGCATTGCGATTTACGT
* *
55047 TGCGATTTACGGATACACGTTGCGATTTACGGATACGCGTTGCGATTTA
1 TGCGATTTACGGATACACGTTGCGATATACGGATACGCATTGCGATTTA
55096 TGTGTTCGCG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (52 bp):
TGCGATTTACGGATACACGTTGCGATATACGGATACGCATTGCGATTTACGT
Found at i:55058 original size:32 final size:32
Alignment explanation
Indices: 55012--55077 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
55002 TACGGATACG
*
55012 CGTTGCGATATACGGATACGCATTGCGATTTA
1 CGTTGCGATATACGGATACACATTGCGATTTA
* *
55044 CGTTGCGATTTACGGATACACGTTGCGATTTA
1 CGTTGCGATATACGGATACACATTGCGATTTA
55076 CG
1 CG
55078 GATACGCGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (32 bp):
CGTTGCGATATACGGATACACATTGCGATTTA
Found at i:55151 original size:21 final size:20
Alignment explanation
Indices: 55127--55203 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
55117 ATATTCGCGT
55127 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
55148 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
55168 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
55190 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
55204 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:55214 original size:20 final size:20
Alignment explanation
Indices: 55189--55240 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
55179 AAGAATCGCG
*
55189 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
55209 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
55229 TTGCGATTCTGG
1 TTGCGATTCTGG
55241 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:55412 original size:3 final size:3
Alignment explanation
Indices: 55406--55446 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
55396 ATATATAATA
*
55406 ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT ACT A-T ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
55447 CATATACATT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
2 4 0.11
3 31 0.89
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:60541 original size:32 final size:27
Alignment explanation
Indices: 60498--60562 Score: 76
Period size: 32 Copynumber: 2.2 Consensus size: 27
60488 TTATTGGGGA
60498 ATATTTGAATTATCAGATAATAATTCAAAAT
1 ATATTTGAATTATC-G--AATAATT-AAAAT
*
60529 ATTATTTTAATTATCGAATAATTAAAAT
1 A-TATTTGAATTATCGAATAATTAAAAT
60557 ATATTT
1 ATATTT
60563 ATGGAGAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 5 0.16
28 6 0.19
29 7 0.22
31 2 0.06
32 12 0.38
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.45
Consensus pattern (27 bp):
ATATTTGAATTATCGAATAATTAAAAT
Done.