genome.fa.s9147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009147.1 Hibiscus syriacus cultivar Beakdansim tig00112662_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40549

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1306--1629	19	18.4	19	79	16	387	46	17	20	14	1.83
1306--1629	33	9.2	34	81	15	303	46	17	20	14	1.83
1334--1651	52	6.0	52	94	4	557	46	16	21	14	1.83
1334--1651	159	2.0	159	94	3	563	46	16	21	14	1.83
1658--1759	19	5.6	19	85	12	151	14	23	17	44	1.86
1866--1902	14	2.6	14	91	0	65	45	21	0	32	1.52
1883--1953	37	1.9	37	97	0	133	52	16	1	29	1.53
3762--3896	19	7.6	19	76	16	137	45	24	19	10	1.81
3818--3874	14	3.7	14	77	20	60	45	24	21	8	1.80
3799--3891	33	2.8	33	98	0	177	47	22	20	9	1.79
3762--3896	52	2.5	54	75	18	131	45	24	19	10	1.81
3892--3968	19	4.3	19	76	17	83	9	15	29	45	1.77
4011--4388	92	4.1	93	98	1	726	46	18	12	22	1.83
6093--6182	14	5.7	14	74	23	81	42	23	25	8	1.83
6085--6199	33	3.5	33	95	0	212	45	20	24	9	1.81
6092--6204	19	6.8	18	72	23	88	43	22	24	9	1.83
6216--6270	14	3.6	14	73	21	56	9	27	23	40	1.85
6391--6461	33	2.2	33	92	0	115	47	18	22	11	1.80
6643--6697	22	2.5	22	81	0	74	20	16	40	23	1.91
6843--7036	20	9.6	20	82	5	221	19	19	25	35	1.95
6843--7036	60	3.2	60	83	0	253	19	19	25	35	1.95
7029--7105	21	3.7	20	70	13	57	27	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7091--7142	20	2.6	20	96	0	95	21	13	26	38	1.90
7305--7363	3	20.3	3	81	6	59	35	1	1	61	1.16
7303--7371	26	2.7	26	77	4	77	39	2	1	56	1.23
8668--8705	20	1.9	20	88	0	58	26	2	0	71	1.00
18073--18101	9	3.2	9	100	0	58	48	20	10	20	1.79
20392--20541	63	2.4	64	82	7	166	32	20	21	26	1.98
21885--21945	23	2.7	23	92	0	104	18	26	27	27	1.98
26157--26207	25	2.0	25	96	0	93	31	7	19	41	1.80
30687--30738	25	2.1	25	100	0	104	48	7	17	26	1.74
35841--36068	57	4.0	57	92	1	368	35	29	20	14	1.92
35841--36068	113	2.0	113	92	0	375	35	29	20	14	1.92

Tables:   1

The End!