genome.fa.s9148.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009148.1 Hibiscus syriacus cultivar Beakdansim tig00112663_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70675

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2206--2235	2	15.0	2	100	0	60	50	0	0	50	1.00
3647--3720	18	3.9	18	86	10	112	27	31	22	18	1.98
3647--3724	39	2.0	39	97	0	147	28	29	23	19	1.98
6950--7003	2	26.5	2	96	3	99	48	1	0	50	1.11
7353--7417	23	2.8	23	85	0	94	18	26	24	30	1.98
11985--12030	6	7.7	6	95	0	83	19	0	47	32	1.50
11968--12030	18	3.5	18	91	0	90	23	0	44	31	1.54
18094--18186	28	3.1	28	62	26	64	24	7	23	44	1.79
18094--18194	31	3.2	32	68	25	97	23	7	22	45	1.79
28863--28914	21	2.5	21	81	3	61	38	19	25	17	1.93
28900--28977	41	1.9	41	86	0	111	39	21	16	21	1.92
28903--28996	20	4.7	20	80	2	89	34	24	18	23	1.96
29513--29560	19	2.5	19	77	12	53	45	27	16	10	1.80
29556--29626	19	3.7	19	88	3	106	12	19	21	46	1.83
29556--29721	20	9.1	19	73	16	127	12	22	21	43	1.86
29561--29637	39	2.0	39	84	5	102	10	19	24	45	1.81
29609--29696	33	2.6	33	90	1	131	12	25	23	38	1.90
31723--31815	42	2.2	42	84	0	123	22	37	16	23	1.93
31779--31845	21	3.2	21	73	0	62	25	32	20	20	1.97
33205--33240	14	2.6	14	95	0	63	30	0	25	44	1.54
33419--33549	19	7.7	19	68	23	112	15	22	19	43	1.87
33425--33549	33	3.8	32	87	8	180	15	21	19	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33416--33548	66	2.0	66	94	0	230	17	21	18	42	1.90
36029--36082	24	2.2	24	90	0	81	38	20	16	24	1.92
37142--37199	20	2.9	20	89	0	89	37	20	22	18	1.94
37222--37295	19	4.5	16	83	16	66	13	20	18	47	1.82
37218--37285	19	3.8	19	87	12	101	13	22	17	47	1.82
39305--39371	19	3.5	19	79	4	71	37	20	23	17	1.94
39286--39403	20	6.4	19	72	13	77	41	22	20	15	1.89
39360--39417	14	3.9	14	79	16	71	48	25	17	8	1.75
39344--39422	32	2.4	33	95	2	142	46	24	18	10	1.80
39451--39508	14	3.9	14	77	16	62	8	15	25	50	1.73
39434--39524	32	2.8	33	93	3	157	10	17	23	48	1.79
39509--39563	20	2.8	19	83	8	65	16	23	23	36	1.94
40036--40080	18	2.5	18	88	0	72	13	15	44	26	1.83
41399--41452	20	2.8	20	80	2	65	48	22	16	12	1.80
41677--41720	22	2.0	22	95	0	79	18	15	45	20	1.85
41908--42001	20	4.7	20	80	2	89	23	18	24	34	1.96
41888--42002	20	5.7	20	78	5	88	23	17	23	35	1.95
41991--42087	21	4.7	21	84	2	133	15	24	18	41	1.89
41930--42064	41	3.3	41	82	4	139	19	21	20	38	1.94
43450--43501	21	2.5	20	81	9	68	30	13	11	44	1.79
47999--48039	21	1.9	22	85	5	57	26	0	41	31	1.56
48724--48807	22	3.8	22	80	7	80	21	25	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55521--55699	75	2.4	75	87	0	241	41	13	12	31	1.82
55674--55724	23	2.2	23	92	0	84	37	17	13	31	1.89
55674--55745	23	3.1	23	85	0	72	33	16	15	34	1.90
59625--59748	61	2.0	62	98	1	241	28	13	19	38	1.90
68118--68180	23	2.9	22	69	11	58	36	26	20	15	1.93

Tables:   1

The End!