Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000915.1 Hibiscus syriacus cultivar Beakdansim tig00001828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78834
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
File 1 of 2
Found at i:8131 original size:45 final size:44
Alignment explanation
Indices: 8062--8206 Score: 218
Period size: 45 Copynumber: 3.2 Consensus size: 44
8052 ATTTAATTTA
* *
8062 ATAAATGAAATGCATAATGATGCATTATCGTCATGAAAGGACGCC
1 ATAAATGAAATGCATAATGGTGCATTATCG-CATGAAAGGATGCC
8107 ATAAATGAAATGCATAATGGTGCATTATCAGCATGAAAGGATGCC
1 ATAAATGAAATGCATAATGGTGCATTATC-GCATGAAAGGATGCC
* *
8152 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAATGATGCC
1 ATAAATGAAATGCATAATGGTGCATTATCG-CATGAAAGGATGCC
*
8197 ATAGATGAAA
1 ATAAATGAAA
8207 ATAAAGTATA
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
44 1 0.01
45 91 0.98
46 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (44 bp):
ATAAATGAAATGCATAATGGTGCATTATCGCATGAAAGGATGCC
Found at i:13556 original size:45 final size:44
Alignment explanation
Indices: 13446--13772 Score: 420
Period size: 45 Copynumber: 7.2 Consensus size: 44
13436 ATTTAATTTA
* *
13446 ATAAATGAAATGTATAACGGTGCATTATCGACATGAAAGGATATGTC
1 ATAAATGAAATGCATAACGGTGCATTATCG-CATGAAAGG--ATGCC
* * *
13493 ATAAATAAAATGTATAACGATGCATTATCAGCATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTATC-GCATGAAAGGATGCC
* *
13538 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAAGATGTC
1 ATAAATGAAATGCATAACGGTGCATTATCG-CATGAAAGGATGCC
* *
13583 ATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATACC
1 ATAAATGAAATGCATAACGGTGCATTATC-GCATGAAAGGATGCC
*
13628 ATAAATGAAATGCATAACGGTGCATTATCGGTATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTATC-GCATGAAAGGATGCC
* * *
13673 ATAAATGAAATACATAACGGTGCATTATCGACATGAAAGGATTCA
1 ATAAATGAAATGCATAACGGTGCATTATCG-CATGAAAGGATGCC
* * *
13718 ATAAATGAAATCCATAATGATGCATTATCGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTATC-GCATGAAAGGATGCC
*
13763 ATACATGAAA
1 ATAAATGAAA
13773 ATAAAGTATA
Statistics
Matches: 250, Mismatches: 25, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
44 2 0.01
45 209 0.84
46 2 0.01
47 36 0.14
48 1 0.00
ACGTcount: A:0.42, C:0.13, G:0.20, T:0.24
Consensus pattern (44 bp):
ATAAATGAAATGCATAACGGTGCATTATCGCATGAAAGGATGCC
Found at i:13690 original size:135 final size:135
Alignment explanation
Indices: 13445--13772 Score: 478
Period size: 135 Copynumber: 2.4 Consensus size: 135
13435 GATTTAATTT
* * * * *
13445 AATAAATGAAATGTATAACGGTGCATTATCGACATGAAAGGATATGTCATAAATAAAATGTATAA
1 AATAAATGAAATGCATAACGGTGCATTATCGGCATGAAAGGATA--CCATAAATGAAATGCATAA
*
13510 CGATGCATTATCAGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCATTATCGACATGAA
64 CGATGCATTATCAGCATGAAAGGATGCCATAAATGAAATACATAACGGTGCATTATCGACATGAA
13575 AAGATGTC
129 AAGAT-TC
*
13583 -ATAAATAAAATGCATAACGGTGCATTATCGGCATGAAAGGATACCATAAATGAAATGCATAACG
1 AATAAATGAAATGCATAACGGTGCATTATCGGCATGAAAGGATACCATAAATGAAATGCATAACG
* * * *
13647 GTGCATTATCGGTATGAAAGGATGCCATAAATGAAATACATAACGGTGCATTATCGACATGAAAG
66 ATGCATTATCAGCATGAAAGGATGCCATAAATGAAATACATAACGGTGCATTATCGACATGAAAA
13712 GATTC
131 GATTC
* * * * *
13717 AATAAATGAAATCCATAATGATGCATTATCGGCATGAAAGGATGCCATACATGAAA
1 AATAAATGAAATGCATAACGGTGCATTATCGGCATGAAAGGATACCATAAATGAAA
13773 ATAAAGTATA
Statistics
Matches: 172, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
134 2 0.01
135 130 0.76
137 40 0.23
ACGTcount: A:0.42, C:0.13, G:0.20, T:0.24
Consensus pattern (135 bp):
AATAAATGAAATGCATAACGGTGCATTATCGGCATGAAAGGATACCATAAATGAAATGCATAACG
ATGCATTATCAGCATGAAAGGATGCCATAAATGAAATACATAACGGTGCATTATCGACATGAAAA
GATTC
Found at i:15502 original size:46 final size:46
Alignment explanation
Indices: 15434--15772 Score: 543
Period size: 46 Copynumber: 7.4 Consensus size: 46
15424 AAATGAATCC
* *
15434 AAATGAAATGCATGAAAAGATGCATTAAGGCATGAAAGGATTCCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
* * *
15480 AAATGAAATGCATGAAATGATGCATTAAGGAATGAAAGGAAGCCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
* * *
15526 ATATGAAATGCATGAAAGGATGCGTTAAGGCATGAAAGGATGTCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
*
15572 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAAGATGCCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
* *
15618 ACATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCAAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
* *
15664 AAATGAAATGCATGAAAGAATGCATTAAGGCATGAAAGGATGTCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
*
15710 AAATGAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGCCAT
1 AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
*
15756 AAATGAAATGCGTGAAA
1 AAATGAAATGCATGAAA
15773 ATGAAATGCA
Statistics
Matches: 268, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 268 1.00
ACGTcount: A:0.45, C:0.10, G:0.24, T:0.21
Consensus pattern (46 bp):
AAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCAT
Found at i:15730 original size:26 final size:26
Alignment explanation
Indices: 15693--15772 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 26
15683 ATGCATTAAG
*
15693 GCATGAAAGGATGTCATAAATGAAAT
1 GCATGAAAGGATGACATAAATGAAAT
*
15719 GCATGAAAGGAT-ACAT---T--AAG
1 GCATGAAAGGATGACATAAATGAAAT
*
15739 GCATGAAAGGATGCCATAAATGAAAT
1 GCATGAAAGGATGACATAAATGAAAT
*
15765 GCGTGAAA
1 GCATGAAA
15773 ATGAAATGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
20 14 0.33
21 3 0.07
22 1 0.02
24 1 0.02
25 3 0.07
26 21 0.49
ACGTcount: A:0.45, C:0.10, G:0.25, T:0.20
Consensus pattern (26 bp):
GCATGAAAGGATGACATAAATGAAAT
Found at i:15776 original size:15 final size:15
Alignment explanation
Indices: 15756--15787 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15746 AGGATGCCAT
*
15756 AAATGAAATGCGTGA
1 AAATGAAATGCATGA
15771 AAATGAAATGCATGA
1 AAATGAAATGCATGA
15786 AA
1 AA
15788 GGATGCATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.22, T:0.19
Consensus pattern (15 bp):
AAATGAAATGCATGA
Found at i:16046 original size:55 final size:56
Alignment explanation
Indices: 15966--16116 Score: 184
Period size: 54 Copynumber: 2.8 Consensus size: 56
15956 CGAATTTGTT
* *
15966 CAAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATGGGCACTTTGTGTG
1 CAAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATCGGCACTATGTGTG
* * **
16022 CAAAAACTAAG-AATTCTTAATAAGTTTATGAAATTCCT-T-TCGGTGCTATGTGTG
1 CAAAAACTAAGAAATTCATAATAAGTTTATG-AATTTCTGTATCGGCACTATGTGTG
** *
16076 -GGAAACTAAGAAATTCATATTAAGTTTATGAATTTCTGTAT
1 CAAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTAT
16117 TGGTAGTGGG
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
53 14 0.17
54 29 0.36
55 20 0.25
56 17 0.21
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (56 bp):
CAAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATCGGCACTATGTGTG
Found at i:16456 original size:81 final size:81
Alignment explanation
Indices: 16283--16488 Score: 263
Period size: 81 Copynumber: 2.5 Consensus size: 81
16273 AGTGGCTTAG
* *
16283 CTGTGTATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
1 CTGTGTATTTGGCAGAAAAGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
16348 AAGACTAAAAGCCTAA
66 AAGACTAAAAGCCTAA
* ** *
16364 CTATGCCTTTGGCAGAAAAGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGGGTAA
1 CTGTGTATTTGGCAGAAAAGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
***
16429 AAGACTAAATTTCTAA
66 AAGACTAAAAGCCTAA
* * * *
16445 -TGGTGTATTTGGCAG-AAAGATGCCAATAATGCAAGTTGGATGAA
1 CT-GTGTATTTGGCAGAAAAG-TGTCAATCATGCCAGTTAGATGAA
16489 GGACAAATTG
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 5 0.05
81 102 0.95
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.28
Consensus pattern (81 bp):
CTGTGTATTTGGCAGAAAAGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
AAGACTAAAAGCCTAA
Found at i:18441 original size:3 final size:3
Alignment explanation
Indices: 18433--18463 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
18423 TATGTCTGAC
18433 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
18464 CCTTATTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22997 original size:81 final size:81
Alignment explanation
Indices: 22874--23471 Score: 773
Period size: 81 Copynumber: 7.4 Consensus size: 81
22864 TCTTTCCTCT
* * * * * *
22874 AAAGGCCTTTAACCTTTCCTCTAACTTCCATGATTGACACCTTTCTGCCAAATGCACAGCTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAACTAGGC
* *
22939 ATTTAATGTTTTACTT
66 ATTTAATCTTTTACTC
* * * * *
22955 AAAGGCATTTAGCCTCTCATCTAACTTGCATGATCGGTACCTTTCTACCAAATACACAACTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAACTAGGC
23020 ATTTAATCTTTTACTC
66 ATTTAATCTTTTACTC
* * * *
23036 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGAACATTTCTACCAAATGCACAACAAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAACTAGGC
* *
23101 ATATAATCTTTTACTT
66 ATTTAATCTTTTACTC
* * * *
23117 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTCTACCAAATGCACAGCTAGGA
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAACTAGGC
23182 ATTTAATCTTTTACTC
66 ATTTAATCTTTTACTC
** * * * **
23198 AAATACATTTATCCTTTAATCTAACTTGCATGATTGTCACCTTTCTGGAAAATGCACAACTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAACTAGGC
*
23263 ATATAATCTTTTACTC
66 ATTTAATCTTTTACTC
* * *
23279 AAAGGCATTTAGCCTTTCATCTAATTTGCATGATTGTCACCTTTCTGCCAAATGCACAGCTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAACTAGGC
*
23344 ATTTTATCTTTTACTC
66 ATTTAATCTTTTACTC
* * * * * * * * *
23360 AAAGTCATTTAACTTTTCATCTAACTTGAATGTTTTGCACCTTTATGCAAAACGCACAACTAGGC
1 AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAACTAGGC
* *
23425 ATATAATATTTTACTC
66 ATTTAATCTTTTACTC
*
23441 AAAGGCATTTAGTCTTTCATCTAACTTGCAT
1 AAAGGCATTTAGCCTTTCATCTAACTTGCAT
23472 TTAATCTTTT
Statistics
Matches: 447, Mismatches: 70, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 447 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.36
Consensus pattern (81 bp):
AAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGGCACCTTTCTGCCAAATGCACAACTAGGC
ATTTAATCTTTTACTC
Found at i:23496 original size:22 final size:22
Alignment explanation
Indices: 23421--23496 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
23411 ACGCACAACT
* *
23421 AGGCATATAATATTTTACTCAA
1 AGGCATTTAATCTTTTACTCAA
* *
23443 AGGCATTTAGTCTTTCA-TCTAA
1 AGGCATTTAATCTTTTACTC-AA
**
23465 CTTGCATTTAATCTTTTACTCAA
1 -AGGCATTTAATCTTTTACTCAA
23488 AGGCATTTA
1 AGGCATTTA
23497 GCTTTTCATC
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
21 2 0.05
22 22 0.54
23 15 0.37
24 2 0.05
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.41
Consensus pattern (22 bp):
AGGCATTTAATCTTTTACTCAA
Found at i:23497 original size:45 final size:45
Alignment explanation
Indices: 23423--23516 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
23413 GCACAACTAG
23423 GCATATAATATTTTACTCAAAGGCATTTAG-TCTTTCATCTAACTT
1 GCATATAATATTTTACTCAAAGGCATTTAGCT-TTTCATCTAACTT
* *
23468 GCATTTAATCTTTTACTCAAAGGCATTTAGCTTTTCATCTAACTT
1 GCATATAATATTTTACTCAAAGGCATTTAGCTTTTCATCTAACTT
23513 GCAT
1 GCAT
23517 GATTGGCATT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 45 0.98
46 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (45 bp):
GCATATAATATTTTACTCAAAGGCATTTAGCTTTTCATCTAACTT
Found at i:24092 original size:75 final size:75
Alignment explanation
Indices: 23968--24126 Score: 210
Period size: 75 Copynumber: 2.1 Consensus size: 75
23958 CATACTATGA
* * * *
23968 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGATATTATG
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGACATTATA
24033 GAATCCATAG
66 GAATCCATAG
* * * * * * *
24043 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATTGATACAATTTAGGCATTCTA
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGACATTATA
*
24108 GAATCCATGG
66 GAATCCATAG
24118 TATCGATAC
1 TATCGATAC
24127 GTTTCTCCTA
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (75 bp):
TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGACATTATA
GAATCCATAG
Found at i:24158 original size:95 final size:94
Alignment explanation
Indices: 24040--24239 Score: 249
Period size: 95 Copynumber: 2.1 Consensus size: 94
24030 ATGGAATCCA
* * * *
24040 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATTGATACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCAGTATCGATACAATTTAGCCA-
* *
24104 TCTAGAATCCATGGTATCGATACGTTTCTCC
64 TCTAGAATCCAAGGTATCGATACCTTTCTCC
* * **
24135 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
* * *
24200 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TAGAATCCAAGGTATCGATACCTTTCTCC
*
24229 TAGTACTGATA
1 TAGTACCGATA
24240 TCTTTATGCC
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
94 36 0.40
95 53 0.59
96 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
TAGAATCCAAGGTATCGATACCTTTCTCC
Found at i:24778 original size:20 final size:20
Alignment explanation
Indices: 24753--24845 Score: 68
Period size: 20 Copynumber: 4.6 Consensus size: 20
24743 CTGGAATCCA
24753 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
24773 TAGTATCGATA-C-TTCAATAC
1 TAGTATCGATACCTTTC--TTC
**
24793 TATGGTATCGATA-CTCCCTT-
1 TA--GTATCGATACCTTTCTTC
*
24813 TCAGTATCGATACCTTTCTCC
1 T-AGTATCGATACCTTTCTTC
*
24834 TAGTACCGATAC
1 TAGTATCGATAC
24846 TTCTATTCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
18 3 0.05
19 10 0.18
20 30 0.53
21 3 0.05
22 10 0.18
23 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.38
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:24830 original size:61 final size:61
Alignment explanation
Indices: 24754--24895 Score: 214
Period size: 61 Copynumber: 2.3 Consensus size: 61
24744 TGGAATCCAT
* * *
24754 AGTATCGATACCTTTCTTCTAGTATCGATACTTCAATACTATGGTATC-GATACTCCCTTTC
1 AGTATCGATACCTTTCTCCTAGTACCGATACTTCAATACAATGGTATCAG-TACTCCCTTTC
* *
24815 AGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCAATGGTATCAGTACTCCCTTTC
1 AGTATCGATACCTTTCTCCTAGTACCGATACTTCAATACAATGGTATCAGTACTCCCTTTC
24876 AGTATCGATACCATTTCTCC
1 AGTATCGATACC-TTTCTCC
24896 ATCTGGATTC
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
61 66 0.89
62 8 0.11
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (61 bp):
AGTATCGATACCTTTCTCCTAGTACCGATACTTCAATACAATGGTATCAGTACTCCCTTTC
Found at i:25190 original size:713 final size:704
Alignment explanation
Indices: 24117--27719 Score: 4487
Period size: 754 Copynumber: 5.0 Consensus size: 704
24107 AGAATCCATG
* * *
24117 GTATCGATACGTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCAATGGTATCAGTACTCCCTTTCAGTAT
*
24182 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTAT
66 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
* * * * *
24247 GCCAAATGCATAGTTAGGCATTTACCTTTCATTTTAAAACAGTTCCTAAAAT-AAAATTATTTAT
131 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
* *
24311 AATATCAATTCCACACATATTATAAACATATATCATATTAA-GTAAAACATACATTAATTTAAAT
196 AATATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAAC
* * * * *
24375 ATTTGAGGTGGACTTATTGTGAGTCTCCCTCAACCCATATAATTACAACATATAG-ACTCACCTG
260 ATTTGAGGTGGAATTATTGTAAGTCTCTCTCAACCCATATAATTACAATATAT-GCACTCACCTA
* * * * * *
24439 ATATGCTTTAGTGACGTCTAACTACTCAACAACTTT--TTCC--TTGCTT--TTTTTCTTGCCTG
324 ATATACTGTAGTGACGTCCAACTACTC-GCAACTTTGCTACCTTTTTCTTGCTTTTTCTTGCCTG
* * * *
24498 ACTCGATAGCTTGGTTATAATCTACAAAAGCACCCATTTAGTTCCCATACCATACAAATGTTAGT
388 ACT-GAGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
* *
24563 ATATTATCTAACATTTATACTTTAGCAATACTCAAAAGTACTAATATTTTTAATTTCTATAACAA
452 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
*
24628 CTTCAACCTATCTTATAATTCCTGGCTCAGTAGTATCGGTACCCATACTATGATATCGATACTTC
517 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
*
24693 TATACTACGATACCGTTACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
582 TATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
24758 TCGATACCTTTCTTCTAGTATCGATACTTCAATACTATGGTATCGATACTCCCTTTCA
647 TCGATACCTTTCTTCTAGTATCGATACTTCAATACTATGGTATCGATACTCCCTTTCA
24816 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCAATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCAATGGTATCAGTACTCCCTTTCAGTAT
*
24881 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATTTTTAT
66 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
24946 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
131 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
*
25011 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAACCATACATTAATTTAAACA
196 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
25076 TTTGAGGTGGAATTATTGTAAGTCTCTCTCAACCCATATAATTACAATATATGCACTCACCTAAT
261 TTTGAGGTGGAATTATTGTAAGTCTCTCTCAACCCATATAATTACAATATATGCACTCACCTAAT
* *
25141 ATACTGTAGTGACGTCCAACTACTCGGCAACTTTG-T-CC-TTTAC---CTTTTTCTTACCTGAC
326 ATACTGTAGTGACGTCCAACTACTC-GCAACTTTGCTACCTTTTTCTTGCTTTTTCTTGCCTGAC
* * *
25200 TAAGGAGATTGGTTATAATCTACACAAGTACCCATTTAGTACACATACCATACAAATGTTAGTAT
390 TGA-GAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTAT
25265 ATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACT
454 ATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACT
* *
25330 TCAACCTATCTTATAATTCCTTGCTCAATAGTATCGGTACCCATCCTATGATATCGATACTTCTA
519 TCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTA
25395 TACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATC
584 TACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATC
25460 GATACCTTTCTTCTAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATGGTATCGAT
649 GATACCTTTCTTCTAGTATCGATA-----CTTC----------A-----ATACTATGGTATCGAT
25525 ACTCCCTTTCA
694 ACTCCCTTTCA
* * *
25536 GTATCTATACCATTTAGGCATTCTGGAATCTATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACC-TTT---C--TC------CTA--GTACCGATA-C--T-T-CTA-T-TC-A-A-T
** ** * ** * *
25601 TCTATTCTATGGTA-TCAGTACTCCCTATC-AGTATCGATACCATTTCTCAATCTGGATTCCAAG
42 GGTA-TC-A--GTACTCCCT-TTCAGTATCGA-TA-C--C---ATTTCTCCATCTGGATTCCAAG
* *
25664 GTATCGATACCTTTCTCTTAGTATTGATATATTTATGCCAAATGCACAGTTACGCATTTATCTTT
95 GTATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTT
*
25729 CATTTTAAAACAATTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACAT
160 CATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACAT
* *
25794 ATATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGACTCCCT
225 ATATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCTCT
* *
25859 CAACCCATATAATTACAATATATGCACTCACCTAATATACTGTTGTTACGTCCAACTACTCGACA
290 CAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCG-CA
* * * *
25924 ACTTTG-T-CC--TTGC--GCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAGC
354 ACTTTGCTACCTTTTTCTTGCTTTTTCTTGCCTGACTGA-GAGCTTGGTTATAATCTACACAAGC
*
25983 ACCCATTTAGTACACATACCATACAAATTTTAGTATATTATCTAACATTTATACTTTAGTAATAC
418 ACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAC
26048 TCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAAT
483 TCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAAT
* * *
26113 AGTATAGGTACTCATACTATGATATCGATACTTCTCTACTACGATACCGATACTCCCTTTCAGTA
548 AGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTA
*
26178 TCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA-C-TTCTATACTATGGTATCGATAC
613 TCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCT-T-CTA--GTATCGATAC
* ** * * *
26241 TCCCTTTC-A--GTATCGATACAATTTAGGCATTCTGGAATCCA
674 TTCAATACTATGGTATCGATAC----T---C--CCT----TTCA
* *
26282 TGGTATCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGT
1 --GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCAATGGTATCAGTACTCCCTTTCAGT
* *
26347 ATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTTTTAGTACTGATATCTTT
64 ATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTT
** *
26412 ATGTTAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTATTC
129 ATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTC
*
26476 ATAATATCAATTCCACACATATTATAAACATATATCATATTAA-GTAAAACATACATTAATTTAA
194 ATAATATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAA
* * *
26540 ACATTTGAGGTGGACTTATTGTGAGTCT-TCCTCAACCCATATAATTACAACATATAG-ACTCAC
258 ACATTTGAGGTGGAATTATTGTAAGTCTCT-CTCAACCCATATAATTACAATATAT-GCACTCAC
* * * * * * * *
26603 CTGATATGCTTTAGTGACGTCTAACTACTCAACAACTTT--TTCC--TTGCCT--TTTTTCTTGC
321 CTAATATACTGTAGTGACGTCCAACTACTC-GCAACTTTGCTACCTTTTTCTTGCTTTTTCTTGC
* * * *
26662 CTGACTCGATAGCTTGGTTATAATCTACATAAGCACCCATTTAGTTCCCATACCATACAAATGTT
385 CTGACT-GAGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTT
*
26727 AGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACGAATACTTTTAATTTCTATAA
449 AGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAA
*
26792 CAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATGCTATGATATCGATAC
514 CAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATAC
26857 TTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATA
579 TTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATA
* *
26922 GTATCGATACCTTTCTTCTAGTATCGTTACTTCAATACTATGGTATCGATACTCACTTTCA
644 GTATCGATACCTTTCTTCTAGTATCGATACTTCAATACTATGGTATCGATACTCCCTTTCA
* * * ** ** * *
26983 GTATCGATACCATTTAGGCATTCTGGAATCC-ATGGTATCGATACCTTTCTCCTAGTA-CCGATA
1 GTATCGATACC-TTT---C-TCCTAGTA-CCGATACT-TC--TA---TTC-AATGGTATCAG-TA
* ** * * * *
27046 CT-TCTATTCTATGGTATC-AGTACTCCCTT-T-CAGTATCGATACAATTTCTCCATCTGGAATC
52 CTCCCT-TTC-A--GTATCGA-TAC-CATTTCTCCA-TCTGGATTCCA-----------------
27107 CAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTAT
93 --AGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTAT
*
27172 CTTTCATTTTAAAACAGTTCTTAAACTAAAAGTTATTCATAATATCAATTCCACACACATTATAA
156 CTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAA
27237 ACATATATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAG---
221 ACATATATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCT
27299 -TCTC-A---ATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTC
286 CTCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTC
* * *
27359 GGCAACTTTG-T-CC--TTTC--ACTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACAC
351 -GCAACTTTGCTACCTTTTTCTTGCTTTTTCTTGCCTGACTGA-GAGCTTGGTTATAATCTACAC
27418 AAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
414 AAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
* *
27483 ACACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCATGGCT
479 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
*
27548 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGGTACTCCCTTTC
544 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTC
* *
27613 AGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTTCTAGTATTGATAC
609 AGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATAC
* *
27678 TTCTATACTATGGTATCGATACTCCCATTCA
674 TTCAATACTATGGTATCGATACTCCCTTTCA
27709 GTATCGATACC
1 GTATCGATACC
27720 ATTTAGGCAT
Statistics
Matches: 2576, Mismatches: 182, Indels: 265
0.85 0.06 0.09
Matches are distributed among these distances:
699 189 0.07
700 444 0.17
701 7 0.00
703 1 0.00
704 7 0.00
705 10 0.00
707 3 0.00
710 8 0.00
711 24 0.01
712 3 0.00
713 430 0.17
714 134 0.05
715 8 0.00
719 1 0.00
720 48 0.02
721 7 0.00
722 1 0.00
723 2 0.00
724 4 0.00
725 3 0.00
726 385 0.15
727 2 0.00
728 1 0.00
729 4 0.00
730 4 0.00
731 1 0.00
732 3 0.00
733 99 0.04
734 107 0.04
735 2 0.00
736 5 0.00
737 2 0.00
738 1 0.00
739 3 0.00
740 2 0.00
741 1 0.00
742 5 0.00
743 1 0.00
744 4 0.00
745 2 0.00
746 4 0.00
747 7 0.00
748 21 0.01
749 1 0.00
751 3 0.00
752 4 0.00
753 6 0.00
754 553 0.21
756 9 0.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (704 bp):
GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCAATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
TTTGAGGTGGAATTATTGTAAGTCTCTCTCAACCCATATAATTACAATATATGCACTCACCTAAT
ATACTGTAGTGACGTCCAACTACTCGCAACTTTGCTACCTTTTTCTTGCTTTTTCTTGCCTGACT
GAGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATAT
TATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTC
AACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATA
CTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGA
TACCTTTCTTCTAGTATCGATACTTCAATACTATGGTATCGATACTCCCTTTCA
Found at i:25478 original size:20 final size:20
Alignment explanation
Indices: 25453--25504 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
25443 CTGGAATCCA
25453 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
25473 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
* *
25493 TAATATTGATAC
1 TAGTATCGATAC
25505 TTCTATACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:25560 original size:115 final size:115
Alignment explanation
Indices: 25380--25599 Score: 332
Period size: 115 Copynumber: 1.9 Consensus size: 115
25370 CCATCCTATG
* *
25380 ATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCT
1 ATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCT
* * *
25445 GGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTA
66 GGAATCCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTA
* * * * *
25495 ATATTGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCTATACCATTTAGGCATTCT
1 ATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCT
* *
25560 GGAATCTATGGTATCGATACCATTCTCCTAGTACCGATAC
66 GGAATCCATAGTATCGATACCATTCTCCTAGTACCGATAC
25600 TTCTATTCTA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 93 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (115 bp):
ATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCT
GGAATCCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTA
Found at i:25574 original size:95 final size:94
Alignment explanation
Indices: 25475--25692 Score: 269
Period size: 95 Copynumber: 2.3 Consensus size: 94
25465 CTTTCTTCTA
* *
25475 GTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAG-TACTCCCTATCAGTA
* * * * *
25539 TCTATACCATTTAGGCATTCTGGAATCTATG
65 TCGATACCATTT-CGCAATCTGGAATCCAAG
* * ** *
25570 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTATCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTATCAGTAT
* *
25635 CGATACCATTTCTCAATCTGGATTCCAAG
66 CGATACCATTTCGCAATCTGGAATCCAAG
25664 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
25693 TATTTATGCC
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
93 1 0.01
94 35 0.34
95 66 0.64
96 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTATCAGTAT
CGATACCATTTCGCAATCTGGAATCCAAG
Found at i:26258 original size:75 final size:75
Alignment explanation
Indices: 26135--26293 Score: 237
Period size: 75 Copynumber: 2.1 Consensus size: 75
26125 CATACTATGA
* * * *
26135 TATCGATACTTCTCTACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATG
1 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
26200 GAATCCATAG
66 GAATCCATAG
* * * *
26210 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTCTG
1 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
*
26275 GAATCCATGG
66 GAATCCATAG
26285 TATCGATAC
1 TATCGATAC
26294 CTTTCTCCTA
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (75 bp):
TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
GAATCCATAG
Found at i:26325 original size:95 final size:94
Alignment explanation
Indices: 26207--26393 Score: 268
Period size: 95 Copynumber: 2.0 Consensus size: 94
26197 ATGGAATCCA
* * *
26207 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCGATACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCAGTATCGATACAATTTAGCCA-
*
26271 TCTGGAATCCATGGTATCGATACCTTTCTCC
64 TCTGGAATCCAAGGTATCGATACCTTTCTCC
* * **
26302 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
*
26367 TGGATTCCAAGGTATCGATACCTTTCT
66 TGGAATCCAAGGTATCGATACCTTTCT
26394 TTTAGTACTG
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
94 27 0.33
95 54 0.66
96 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:26987 original size:95 final size:95
Alignment explanation
Indices: 26848--27139 Score: 385
Period size: 95 Copynumber: 3.1 Consensus size: 95
26838 CATGCTATGA
* * * *
26848 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
26913 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * * *
26943 TATCGTTACTTCAATACTATGGTATCGATACTCACTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* *
27008 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * * **
27038 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACAATTTCTCCA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
27101 GGAATCCA-AGGTATCGATACCTTTC-TCTTAG
65 GGAATCCATA-GTATCGATACCTTTCTTC-TAG
*
27132 TATTGATA
1 TATCGATA
27140 TCTTTATGCC
Statistics
Matches: 171, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
93 1 0.01
94 36 0.21
95 134 0.78
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
GAATCCATAGTATCGATACCTTTCTTCTAG
Found at i:27608 original size:726 final size:730
Alignment explanation
Indices: 24816--27847 Score: 4873
Period size: 754 Copynumber: 4.1 Consensus size: 730
24806 CTCCCTTTCA
*
24816 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCAATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
*
24881 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATTTTTAT
66 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
24946 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
131 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
*
25011 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAACCATACATTAATTTAAACA
196 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
25076 TTTGAGGTGGAATTATTGTAAGTCTCTCTCAACCCATATAATTACAATATATGCACTCACCTAAT
261 TTTGAGGTGGAATTATTGTAAG-CTC-CTCAA--CATATAATTACAATATATGCACTCACCTAAT
* *
25141 ATACTGTAGTGACGTCCAACTACTCGGCAACTTTGTCCTT-TACCTTTTTCTTACCTGACTAAGG
322 ATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCA-CTTTTTCTTACCTGACTAAGG
* *
25205 AGATTGGTTATAATCTACACAAGTACCCATTTAGTACACATACCATACAAATGTTAGTATATTAT
386 AGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTAT
25270 CTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAAC
451 CTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAAC
* *
25335 CTATCTTATAATTCCTTGCTCAATAGTATCGGTACCCATCCTATGATATCGATACTTCTATACTA
516 CTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTA
*
25400 CGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATAC
581 CGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATAC
25465 CTTTCTTCTAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATGGTATCGATACTCC
646 CTTTCTTCTAGTATCG------------------T--TACTTCTATACTATGGTATCGATACTCC
* *
25530 CTTTCAGTATCTATACCATTTAGGCATTCTGGAATCTATG
691 CTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATG
* *
25570 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTATCAGTAT
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
* *
25635 CGATACCATTTCTCAATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATATTTAT
66 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
* *
25700 GCCAAATGCACAGTTACGCATTTATCTTTCATTTTAAAACAATTCTTAAACTAAAAATTATTCAT
131 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
25765 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
196 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
25830 TTTGAGGTGGAATTATTGTAAGACTCCCTCAACCCATATAATTACAATATATGCACTCACCTAAT
261 TTTGAGGTGGAATTATTGTAAG-CT-CCTCAA--CATATAATTACAATATATGCACTCACCTAAT
* * *
25895 ATACTGTTGTTACGTCCAACTACTCGACAACTTTGTCCTTGCGCTTTTTCTTACCTGACTAAGGA
322 ATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCACTTTTTCTTACCTGACTAAGGA
* *
25960 GCTTGGTTATAATATACACAAGCACCCATTTAGTACACATACCATACAAATTTTAGTATATTATC
387 GCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATC
26025 TAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACC
452 TAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACC
* * *
26090 TATCTTATAATTCCTGGCTCAATAGTATAGGTACTCATACTATGATATCGATACTTCTCTACTAC
517 TATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTAC
26155 GATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCC--A-TA--G-TA--
582 GATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACC
*
26212 -----TC--G-A----TACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACAATTT
647 TTTCTTCTAGTATCGTTACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTT
26265 AGGCATTCTGGAATCCATG
712 AGGCATTCTGGAATCCATG
*
26284 GTATCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
* *
26349 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTTTTAGTACTGATATCTTTAT
66 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
** *
26414 GTTAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTATTCAT
131 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
*
26478 AATATCAATTCCACACATATTATAAACATATATCATATTAA-GTAAAACATACATTAATTTAAAC
196 AATATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAAC
* * * *
26542 ATTTGAGGTGGACTTATTGTGAGTCTTCCTCAACCCATATAATTACAACATATAG-ACTCACCTG
260 ATTTGAGGTGGAATTATTGTAAG-C-TCCTCAA--CATATAATTACAATATAT-GCACTCACCTA
* * * * * * *
26606 ATATGCTTTAGTGACGTCTAACTACTCAACAACTTTTTCCTTGC-CTTTTTTCTTGCCTGACT-C
320 ATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCAC-TTTTTCTTACCTGACTAA
* * * *
26669 GATAGCTTGGTTATAATCTACATAAGCACCCATTTAGTTCCCATACCATACAAATGTTAGTATAT
384 G-GAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATAT
*
26734 TATCTAACATTTATACTTTAGTAATACTCAAAAGTACGAATACTTTTAATTTCTATAACAACTTC
448 TATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTC
*
26799 AACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATGCTATGATATCGATACTTCTATA
513 AACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATA
*
26864 CTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGA
578 CTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGA
* *
26929 TACCTTTCTTCTAGTATCGTTACTTCAATACTATGGTATCGATACTCACTTTCAGTATCGATACC
643 TACCTTTCTTCTAGTATCGTTACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACC
26994 ATTTAGGCATTCTGGAATCCATG
708 ATTTAGGCATTCTGGAATCCATG
27017 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
* *
27082 CGATACAATTTCTCCATCTGGAATCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
66 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
*
27147 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAGTTATTCAT
131 GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
27212 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
196 AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
27277 TTTGAGGTGGAATTATTGTAAG-T-CTC-A-ATATAATTACAATATATGCACTCACCTAATATAC
261 TTTGAGGTGGAATTATTGTAAGCTCCTCAACATATAATTACAATATATGCACTCACCTAATATAC
* *
27338 TGTAGTGACGTCCAACTACTCGGCAACTTTGTCCTTTCACTTTTTCTTACCTGACTAAGGAGCTT
326 TGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCACTTTTTCTTACCTGACTAAGGAGCTT
27403 GGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAAC
391 GGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAAC
*
27468 ATTTATACTTTAGTAACACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATC
456 ATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATC
*
27533 TTATAATTCATGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATA
521 TTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATA
*
27598 CCGGTACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTC
586 CCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTC
* * *
27663 TTCTAGTATTGATACTTCTATACTATGGTATCGATACTCCCATTCAGTATCGATACCATTTAGGC
651 TTCTAGTATCGTTACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGC
*
27728 ATTCTGAAATCCATG
716 ATTCTGGAATCCATG
* * **
27743 GTATCGATATCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCTATTTCAGTAT
1 GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
* *
27808 GGATACCATTTCTCCATCTGGATTCCAAGGTATCAATACC
66 CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACC
27848 ATTTAGGAAT
Statistics
Matches: 2130, Mismatches: 116, Indels: 92
0.91 0.05 0.04
Matches are distributed among these distances:
712 2 0.00
713 414 0.19
714 240 0.11
715 1 0.00
716 2 0.00
718 1 0.00
719 2 0.00
725 1 0.00
726 505 0.24
727 2 0.00
728 1 0.00
729 2 0.00
730 3 0.00
731 1 0.00
733 242 0.11
734 91 0.04
738 1 0.00
739 1 0.00
741 2 0.00
748 2 0.00
749 1 0.00
751 2 0.00
752 1 0.00
754 609 0.29
755 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (730 bp):
GTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTAT
GCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCAT
AATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACA
TTTGAGGTGGAATTATTGTAAGCTCCTCAACATATAATTACAATATATGCACTCACCTAATATAC
TGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCACTTTTTCTTACCTGACTAAGGAGCTT
GGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAAC
ATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATC
TTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATA
CCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTC
TTCTAGTATCGTTACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGC
ATTCTGGAATCCATG
Found at i:27713 original size:95 final size:95
Alignment explanation
Indices: 27577--27819 Score: 292
Period size: 95 Copynumber: 2.6 Consensus size: 95
27567 ACTATGATAT
* * * * * * *
27577 CGATACTTCTATACTACGATACCGGTACTCCCTTTCAGTATCGATACCATTTCGGTATTATGGAA
1 CGATACTTCTATACTATGGTATCGATACTCCCATTCAGTATCGATACCATTTCGGCATTATGAAA
* *
27642 TCCATAGTATCGATACCTTTCTTCTAGTAT
66 TCCATAGTATCGATACCTTTCTCCTAGTAC
* * *
27672 TGATACTTCTATACTATGGTATCGATACTCCCATTCAGTATCGATACCATTTAGGCATTCTGAAA
1 CGATACTTCTATACTATGGTATCGATACTCCCATTCAGTATCGATACCATTTCGGCATTATGAAA
* *
27737 TCCATGGTATCGATATCTTTCTCCTAGTAC
66 TCCATAGTATCGATACCTTTCTCCTAGTAC
* * * *
27767 CCATACTTCTATTCTATGGTATC-AGTACT-CTATTTCAGTATGGATACCATTTC
1 CGATACTTCTATACTATGGTATCGA-TACTCCCA-TTCAGTATCGATACCATTTC
27820 TCCATCTGGA
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
94 3 0.02
95 123 0.98
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (95 bp):
CGATACTTCTATACTATGGTATCGATACTCCCATTCAGTATCGATACCATTTCGGCATTATGAAA
TCCATAGTATCGATACCTTTCTCCTAGTAC
Found at i:27941 original size:128 final size:128
Alignment explanation
Indices: 27709--27975 Score: 430
Period size: 128 Copynumber: 2.1 Consensus size: 128
27699 CTCCCATTCA
* *
27709 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATATCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGAATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* * *
27774 TCTATTCTATGGTATCAGTACTCTATTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGATATCAGTACTCCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* * *
27837 GTATCAATACCATTTAGGAATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGAATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
27902 TCTATTCTATGATAT-ATGTACTCCCA-TTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGATATCA-GTACT-CCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
27965 GTATCGATACC
1 GTATCGATACC
27976 TTTCTCTTAG
Statistics
Matches: 128, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
127 1 0.01
128 125 0.98
129 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGAATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGATATCAGTACTCCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:28521 original size:20 final size:22
Alignment explanation
Indices: 28475--28527 Score: 74
Period size: 20 Copynumber: 2.5 Consensus size: 22
28465 ACTCCCTTTC
28475 AGTATCGATACCATTTCGGTAT
1 AGTATCGATACCATTTCGGTAT
* *
28497 AGTATCGATACC-TTTC-TTCT
1 AGTATCGATACCATTTCGGTAT
28517 AGTATCGATAC
1 AGTATCGATAC
28528 TTCTATACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 13 0.45
21 4 0.14
22 12 0.41
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (22 bp):
AGTATCGATACCATTTCGGTAT
Found at i:28551 original size:83 final size:88
Alignment explanation
Indices: 28436--28669 Score: 264
Period size: 95 Copynumber: 2.6 Consensus size: 88
28426 CATACTATGA
* * *
28436 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGG-T-AT-A
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCTAATCA
*
28498 -G-TATCGATACCTTTCTTCTAG
66 TGTTATCGATACCTTTCTCCTAG
*
28519 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGG----CT-
28584 AAATCCATGTTATCGATACCTTTCTCCTAG
61 -AAT-CATGTTATCGATACCTTTCTCCTAG
* * * * *
28614 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGCATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
28670 TCCTTCTGGA
Statistics
Matches: 127, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
83 54 0.43
88 1 0.01
91 2 0.02
93 1 0.01
94 2 0.02
95 67 0.53
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.38
Consensus pattern (88 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCTAATCA
TGTTATCGATACCTTTCTCCTAG
Found at i:28726 original size:128 final size:128
Alignment explanation
Indices: 28559--28825 Score: 437
Period size: 128 Copynumber: 2.1 Consensus size: 128
28549 CTCCCTTTCA
* *
28559 GTATCGATACCATTTAGGCATTCTGAAATCCATGTTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCATAGTACCCATACT
* *
28624 TCTATTCTATGGTATCA-GTACTCCGTTTCAGCATCGATACCATTTCTCCTTCTGGATTCCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGCATCGATACCATTTCTCCATCTGGATTCCAAG
* * * *
28687 GTATGGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACTTTTCTCATAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCATAGTACCCATACT
*
28752 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGCATCGATACCATTTCTCCATCTGGATTCCAAG
28815 GTATCGATACC
1 GTATCGATACC
28826 TTTGTCTTAG
Statistics
Matches: 128, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
127 1 0.01
128 127 0.99
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCATAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGCATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:28794 original size:850 final size:851
Alignment explanation
Indices: 26983--29556 Score: 4318
Period size: 850 Copynumber: 3.0 Consensus size: 851
26973 CTCACTTTCA
26983 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
27048 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACAATTTCTCCATCTGGAATCCAAGG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
27112 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
*
27177 ATTTTAAAACAGTTCTTAAACTAAAAGTTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
27242 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAG--T--CTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
*
27303 -A---ATATAATTAC-AATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGGCA
325 AACCCATATAATTACAAATATA-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACA
*
27363 ACTTTGTCCTTTCACTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCAT
389 ACTTTGTCCTTGC-CTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCAT
*
27428 TTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAACACTCAAAA
453 TTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
*
27493 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCATGGCTCAATAGTATC
518 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
*
27558 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGGTACTCCCTTTCAGTATCGATA
583 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
27623 CCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTA
648 CCATTTC-------TGG-AT-CATAGTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTA
* *
27688 TGGTATCGATACTCCCATTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATAT
704 TGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATAC
* *
27753 CTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCTATTTCAGTATGGATACCATT
769 CTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTC-CTTTCAGTATCGATACCATT
27818 TCTCCATCTGGATTCCAAG
833 TCTCCATCTGGATTCCAAG
* *
27837 GTATCAATACCATTTAGGAATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
27902 TCTATTCTATGATATATGTACTCCCATTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
27967 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
28032 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
28097 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGACGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* * * * *
28162 ACCCATATAATTACAACATATAG-ATTCACCTGATATTCTGTAG-GTACGTCTAACTACTCAACA
326 ACCCATATAATTACAA-ATATAGCACTCACCTAATATACTGTAGTG-ACGTCCAACTACTCGACA
* * * * *
28225 ACTTTTTCCTTGCCTTTTTTCTTGCCTGACTCTA-GAGCTTGGTTATAATCTACATAACCACCCA
389 ACTTTGTCCTTGCC-TTTTTCTTACCTGACT-AAGGAGCTTGGTTATAATCTACACAAGCACCCA
* *
28289 TTTAGTTCACATACCATACAAATGTTAGTATATTATCTATCATTTATACTTTAGTAATACTCAAA
452 TTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAA
28354 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
517 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
*
28419 CGGCACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAT
582 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAT
*
28484 ACCATTTC-GG-T-ATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATGGTATCG
647 ACCATTTCTGGATCATAGTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCG
*
28546 ATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGTTATCGATACCTTTCTCC
712 ATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCC
* *
28611 TAGTACCCATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGCATCGATACCATTTCTCCTTC
777 TAGTACCCATACTTCTATTCTATGGTATCAGTACTCC-TTTCAGTATCGATACCATTTCTCCATC
28676 TGGATTCCAAG
841 TGGATTCCAAG
* * *
28687 GTATGGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACTTTTCTCATAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
28752 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
28817 ATCGATACCTTTGTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
28882 TTTTAAAACTGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
28947 ATCATATCAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATCATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
29012 ACCCATATAATTA-AAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
326 ACCCATATAATTACAAATATA-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
29076 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
390 CTTTGTCCTTG-CCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
29141 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
454 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
29206 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
519 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
* *
29271 GTACCCATACAATGATATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATCGATAC
584 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
*
29336 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTAT
649 CA------T-TTCTGG-AT-CATAGTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTAT
*
29401 GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACC
705 GGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACC
* *
29466 TTTCTCCTAGTACCGATACTTCTATTCTGTGGTATCAGTACTACCTTTCAGTATCGATACCATTT
770 TTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACT-CCTTTCAGTATCGATACCATTT
29531 CTCCATCTGGATTCCAAG
834 CTCCATCTGGATTCCAAG
29549 GTATCGAT
1 GTATCGAT
29557 TCCTTTCTCT
Statistics
Matches: 1613, Mismatches: 74, Indels: 58
0.92 0.04 0.03
Matches are distributed among these distances:
848 5 0.00
849 4 0.00
850 788 0.49
851 3 0.00
852 1 0.00
853 1 0.00
854 306 0.19
856 2 0.00
857 3 0.00
858 5 0.00
859 1 0.00
860 1 0.00
861 2 0.00
862 481 0.30
863 5 0.00
864 5 0.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (851 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
ACCCATATAATTACAAATATAGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
TTTGTCCTTGCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTA
GTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTA
CTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGT
ACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCA
TTTCTGGATCATAGTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCGATAC
TCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGT
ACCCATACTTCTATTCTATGGTATCAGTACTCCTTTCAGTATCGATACCATTTCTCCATCTGGAT
TCCAAG
Found at i:29425 original size:95 final size:94
Alignment explanation
Indices: 29285--29565 Score: 359
Period size: 95 Copynumber: 3.0 Consensus size: 94
29275 CCATACAATG
* * * *
29285 ATATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATCGATACCATTTCGGTATTCT
1 ATATCGATACTTCTATACTATGGTATC-ATACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
*
29350 GGAATCCATAGTATCGATACCTTTCTTCTA
65 GGAATCCATAGTATCGATACCTTTCTCCTA
* *
29380 ATATTGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCT
1 ATATCGATACTTCTATACTATGGTATC-ATACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
*
29445 GGAATCCATGGTATCGATACCTTTCTCCTA
65 GGAATCCATAGTATCGATACCTTTCTCCTA
* * * * * **
29475 GTACCGATACTTCTATTCTGTGGTATCAGTACTACCTTTCAGTATCGATACCATTTCTCCA-TCT
1 ATATCGATACTTCTATACTATGGTATCA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
* *
29539 GGATTCCA-AGGTATCGATTCCTTTCTC
65 GGAATCCATA-GTATCGATACCTTTCTC
29566 TTAGTATTGA
Statistics
Matches: 163, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
94 27 0.17
95 136 0.83
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (94 bp):
ATATCGATACTTCTATACTATGGTATCATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
GAATCCATAGTATCGATACCTTTCTCCTA
Found at i:30099 original size:734 final size:734
Alignment explanation
Indices: 28687--50558 Score: 16752
Period size: 754 Copynumber: 29.0 Consensus size: 734
28677 GGATTCCAAG
* * *
28687 GTATGGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACTTTTCTCATAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
28752 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
*
28816 TATCGATACCTTTGTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
*
28881 ATTTTAAAACTGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
* *
28946 TATCATATCAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATCATTGTAAGTCTCCCTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* *
29011 AACCCATATAATTAAAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAA
325 AACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAA
*
29076 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATT
390 CTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATT
29141 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
455 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
29206 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
520 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
* *
29271 GTACCCATACAATGATATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATCGATAC
585 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
29336 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTAT
650 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTAT
29401 GGTATCGATACTCCCTTTCA
715 GGTATCGATACTCCCTTTCA
29421 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
29486 TCTATTCTGTGGTATCAGTACTACCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
29551 ATCGATTCCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGTATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
29616 TTTTAAAACAATTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
29681 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
29746 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
*
29811 TTTGTCCTTGCCCTTTTTCTTACTTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
29876 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
29941 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
*
30006 TACCCATACTATGATATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
30071 ATTTCGGTATTTTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGT
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACC--T-TTC---T-TC--TA----------A-T
*
30136 ATTGATACTACTATACTATGGTATCGATACTCCCTTTCA
696 ATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
30175 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
30240 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATTGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
30305 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
30370 TTTTAAAACAATTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
30435 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTAGAATTACTGTAAGTATCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
30500 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCATCTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * *
30565 TTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAG-ACCCCATT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCA-CCCATT
30629 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
455 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
* *
30694 TACTAATACTTTTAATTTCTATAATAAATTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
520 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
*
30759 GTACCCATACTATAATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
585 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
*
30824 CATTTCGGTATTCTGGAATCCATAGTATCGGTACCTTTCTTCTAGTATCGATACCTTTCTTCTAG
650 CATTTCGGTATTCTGGAAT-C-------C---A---------TAGTATCGATACCTTTCTTCTAA
*
30889 TATTGATACTACTATACTATGGTATCGATACTCCCTTTCA
695 TATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
30929 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
30994 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATTGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
31059 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
31124 TTTTAAAACAATTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
31189 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTAGAATTACTGTAAGTATCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
31254 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCATCTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * *
31319 TTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAG-ACCCCATT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCA-CCCATT
31383 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
455 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
* *
31448 TACTAATACTTTTAATTTCTATAATAAATTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
520 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
* *
31513 GTACCCATAATATAATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
585 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
*
31578 CATTTCGGTATTCTGGAATCCATAGTATCGGTACCTTTCTTCTAGTATCGATACCTTTCTTCTAG
650 CATTTCGGTATTCTGGAAT-C-------C---A---------TAGTATCGATACCTTTCTTCTAA
*
31643 TATTGATACTACTATACTATGGTATCGATACTCCCTTTCA
695 TATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
31683 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
31748 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATTGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
31813 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATACACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
31878 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
31943 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTAGAATTACTGTAAGTATCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
32008 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCATCTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * *
32073 TTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAG-ACCCCATT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCA-CCCATT
32137 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
455 TAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
* *
32202 TACTAATACTTTTAATTTCTATAATAAATTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
520 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
*
32267 GTACCCATACTATAATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
585 GTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
*
32332 CATTTCGGTATTCTGGAATCCATAGTATCGGTACCTTTCTTCTAGTATCGATACCTTTCTTCTAG
650 CATTTCGGTATTCTGGAAT-C-------C---A---------TAGTATCGATACCTTTCTTCTAA
*
32397 TATTGATACTACTATACTATGGTATCGATACTCCCTTTCA
695 TATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
32437 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
32502 TCTATTCTATGGTATCAGTACTCCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * *
32567 ATCGATACCTTTTTCTTAGTATTGATATCTTTGTGCCAAATGCACAATTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
32632 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
32697 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
*
32762 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * * * *
32827 TTTGTCTTTGGCCTTTTTCTTACCTGACTAAGGAGCTTGGTTGTAATATACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
32892 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
32957 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
*
33022 TACCCATACTATGATATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
33087 ATTTCGGTATTATGGAATCC--A-TA--G-TA-------TC-------GATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATG
33132 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* * *
33151 CTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
33216 TCTATTCTATGGTATCAGTACTCCCTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * *
33281 ATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTAATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
33346 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
33411 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTCTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
*
33476 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * * *
33541 TTTATCCTTGCCCTTTTTCATATCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
33606 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
* * *
33671 ACTAATACTTTTAATTTCTATAACAACTTCAACCTAACTTATAATTCCTGGCTCAGTGGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
33736 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
33801 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGT
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACC--T-TTC---T-TC--TA----------A-T
*
33866 ATTGATACATCTATACTATGGTATCGATACTCCCTTTCA
696 ATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
33905 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
33970 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATATCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
34035 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCGAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
34100 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * * *
34165 ATCATATAACGTAAAACATACATTAATTTAAACATTTGACGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* * * * * *
34230 ACCTATATAATTACAACATATAG-ATTCACCTGATATTCTGTAG-GTACGTCTAACTACTCAACA
326 ACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTG-ACGTCCAACTACTCAACA
* * * * * *
34293 ACTTTTTCCTTGCCTTTTTTCTT-CCTGACT-CGAGAGCTTGGTTATAATCTACATAACCACCCA
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAACTTGGTTATAATCTACACAAGCACCCA
*
34356 TTTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAA
453 TTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAA
34421 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
518 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
*
34486 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAA
583 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAT
* * *
34551 ACCATTTCAGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACT
648 ACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACT
34616 ATGGTATCGATACTCCCTTTCA
713 ATGGTATCGATACTCCCTTTCA
*
34638 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
34703 TCTATTCTATGGTATCAGTACTCCGTTTCAGCATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * *
34768 ATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATA-CTTT-TCTCCTAGTACCGATACT
131 ATCGATACC-TTT---C--TCT----T--A--GTATTGATATCTTTAT-GCC-A--A---ATGC-
* * * ** * * * ** * ** *
34831 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCT--GGA-T-TCCA
174 AC-AGT-TA-GGCAT-T-TA-T--CTTTCA-T-TTTAAAACAGTTCTTAAACTAAAAATTATTCA
* * * ** * * * * * **
34892 -AGGTATCGATACCTTTCTCTTAGTATTGAT-ATC-TTTATGCCAAATGCACA-GTTAGGCATTT
229 TA-ATATC-A-A--TTCCACACA-CATT-ATAAACATATAT--CATAT--A-AGGTAAAACA--T
* * * * ** ** * * ** *
34953 ATCTTTCATTTTAAAACTGTTCTTAAACTAAAAATTATTCATAA-TATCAATTCCACACACATTA
280 A-CATT-AATTT-AAAC--AT-TTGAGGT-GGAATTATT-GTAAGTCTC-CCT-CA-ACCCA-TA
* * ** * * * ** ** * *
35017 TAA--AC-ATATAT-CATATAAGGTAAAACATACAT-TAATTTA--AACATTTGAGGTGGAATC-
333 TAATTACAATATATGCA-CTCACCT--AATATAC-TGT-AGTGACGTCCAACT-A-CT-CAA-CA
* * * * * * *
35074 A-TTGTAAGTCTCCCTGAACCCATATAATTAAAATATATGCACTCACCTAA-TATACTGTAGTGA
389 ACTT-T--G--TCCTTG--CCC-T-T--TT----TCT-TAC-CTGA-CTAAGGA-ACT-TGGTTA
* * * ** * *** * *
35137 CGTCCAA-CTACTCGA-CAACTTTGTCCTTGCCCTTTTTCTTACC-TGACTAAGGA-GCTTGGTT
434 --T--AATCTACACAAGCACCCAT-T--TAG----TACACATACCAT-AC-AA--ATG-TTAG-T
* *
35198 ATAATCTACACAAGCACCCATTTAGTACACATACTATACAAATGTTAGTATATTATCTAACATTT
482 AT-AT-T------------A--T-CTA-ACAT-TTATAC---T-TTAGTA-A-TA-CT--CA---
** * *
35263 ATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTAT
516 A-A----AG---TACT---AA-TACTTTTA--ATT--TC--TATAACAACTTCAACCTATCTTAT
*
35328 AATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCAA
563 AATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGA
35393 TACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCT
628 TACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCT
* *
35458 AGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTCA
693 AATATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
* *
35500 GTATCGAAACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
35565 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
35630 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
35695 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* ** * *
35760 ATCATATAAGGTAAAACATACATTAATTTAAACATTTAAGGTACTAA-TACTTTTAATTTCTATA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGT-GGAATTA-TTGTAA-GTC--T-
* * * * *
35824 ACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT-CAGT-ACC-CATACTA-TG-A-T-
320 -C--CCTCAACC---CATATAA-T--T---ACAATA-TATGCACTCACCTAATA-TACTGTAGTG
* * * ** * * * * * * ** *
35882 A--TCGATACTTCT-ATACTACGAT-ACCGATACTCC-CTTTCAGTATC-GA-T-A-CCATTTCG
371 ACGTCCA-ACTACTCA-ACAACTTTGTCC-TTGC-CCTTTTTC-TTACCTGACTAAGGAACTT-G
* * * * * *** * * *** * *
35938 GTATTATGGAATC--CA-TAGTATCGATACTT-CTACAC-TATGGTATC-GATACTCCCTTTCAG
430 G--TTAT--AATCTACACAAGCACCCAT--TTAGTACACATACCATA-CAAAT-GTTAGTAT-AT
* ** * ** * * * * * *
35997 TATCGATACAATTTAGGCATTCT-GGAAT-C-C-ATGGT-GTCGATACCTTT--CTCCTAGTACC
486 TATCTA-AC-ATTTATAC-TT-TAGTAATACTCAAAAGTACT-AATACTTTTAATTTCTA-TAAC
* ** * * * * * * ** *
36055 GATACATCTATTCTATGGTATCAGTACTCCCT--TTCAGTATCGATACCATTTCTCCAT-CTGGA
545 -A-ACTTC-AACCTAT-CT-T-A-TAATTCCTGGCTCA--ATAG-TATCGGTAC-CCATACT--A
* * * * ** ** * * *
36117 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTA-TGCCAAATGCA-TA--GTTAGG
597 -T----GATATCGATA-C-TTCT-ATACTAC-GATACCGATACT-CC-CTTTCAGTATCGATA-C
** * ** ** ** ** * * *
36178 CATTTATCTTTCATT-T-TAAAACAGTTCT-TAAACTAAATTTATTCATAATA-TCA-A-TTCCA
650 CA-TT-TCGGT-ATTCTGGAATCCA-TAGTATCGA-TACCTTTCTTC-TAATATTGATACTTCTA
* ** * * * * *
36237 CACATATTATAAAC-ATATTTCATATTAA
709 TAC-TATGGT-ATCGATACTCCCT-TTCA
* * ** * * * * * **
36265 GTAAAAC-ATACATTAATTTAAACATTTGAGGTGGACT-TATTGTGAGTC--TCCCTCAAC-CCA
1 GT--ATCGATAC---CATTTAGGCA-TT---CTGGAATCCATGGT-A-TCGATACCT-TTCTCC-
*** * * * ** * ** * * * * * * *
36325 TA-TAATTACAACATATAGACTCACCTGATATGCTTTAGTGACGTCTAACTACTC-A-ACAACTT
53 TAGTACCGA-TACTTCTATTCT-A--TGGTAT-CAGTACT-CCCTTTCAGTA-TCGATACCA-TT
* * ** * ** * * * * * * * * *
36387 TGTCCTTGCCT-TTTTTCTTGCCTGACTCGATAGCTTGAT-TATAATCTACATAAGCACCCATTT
110 TCTCCAT--CTGGATTCCAAG-GT-A-TCGATACCTT--TCTCTTA-GTA-TTGA-TA-TC-TTT
* * * * ** **** *
36450 AGTTCCCATACCATACAAATGTTA-GTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
163 A--TGCCA-A--ATGCACA-GTTAGGCAT-TTATCTTTCATTT-TAAAACAGT--T-CT--TAA-
** * * * ***
36514 TACTAATACTTTTAATTTC-T-ATAACAACTTCAAC-CTATC-TTA-AAATTCCTGGCTCAGTAG
214 -ACTAA-A-AATT-A-TTCATAATATCAA-TTCCACAC-A-CATTATAAA--CATATATCA-TA-
* ** * ** * ** * *
36574 TATCGGT-ACCCATACTATGATATCGATAC-TTCT-ATACTACG-A-TACTG--A-TACTCCCTT
267 TA-AGGTAAAACATAC-ATTA-ATTTAAACATT-TGA-GGT-GGAATTATTGTAAGT-CTCCC--
* * * * ** * * * * * * ** * *
36631 TCAGTATCGATATCATTTCGGTATTCTGGAATC-CATAGTAT-C-GATACCTTTCTTCTAGTATC
323 TCA--ACCCATATAATTACAATA-TATGCACTCACCTAATATACTG-TA-GTGACGTCCA--A-C
* * * * * * * * *
36693 GATACTTCAA-TACTATGGTATCGATACT-CCCTTTCAGAATCGATACC--ATTTAGGCATTCTG
380 --TAC-TCAACAACT-T--TGTC-CT--TGCCCTTT----TTC-TTACCTGACTAAGGAACT-TG
* * *** * * * * *
36754 GAATCCATGGTATCGATAC-CTTTC-CCC---TAGTAC-CGATA-C-TTCTATTCTATGGTATCA
430 G--T-TAT--AATC--TACACAAGCACCCATTTAGTACAC-ATACCATACAAATGT-TAGTAT-A
* * * * * * * **** * * *
36811 GTA-CT-CCCTTT-CAGTATCG--ATAC-CATTTCT-CT-AT-CTGGATTCCAAGGTATCGAT-A
485 TTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACT---TT-TAA--TTTCTATAA
* * * * ** * * ** * *
36866 C--CTTTC-TCTTAGTATTGATATCTTTAT-GC-CAA-ATGCA-CAGTTAGGCATTTATCTTTCA
544 CAAC-TTCAACCTA-TCTT-ATA-ATTCCTGGCTCAATA-GTATC-GGTACCCA--TA-CTATGA
* ** * * * *** * ** * * * * *
36924 TTTTAAAACTGTTCTTAAACTA--AAAATTATTCAT-AATATCAAT-TCCACACACA-TT--ATA
600 TATCGATAC--TTC-TATACTACGATACCGATAC-TCCCTTTCAGTATCGATAC-CATTTCGGTA
** * * * ** * * **
36982 AACAT--ATATCATATAAGGTAAAAC-ATACATTAATT-TAAAAATTTGAGGTGGA-AT-TATTG
660 TTC-TGGA-ATC-CAT-A-GT--ATCGATACCTTTCTTCT-AATA-TTGA--T--ACTTCTATAC
* * ** *
37041 TA-AGTCTCCCTCAAC-CCATATAATTACA
712 TATGGTATCGAT--ACTCC--CT--TT-CA
* * * * * ** * * *
37069 ATATATGCACTCACCTAATATA--C-TGT-AGTGACGTCCA-ACTACTCGACAACTTTGTCCT--
1 GTAT-CG-A-T-ACC--ATTTAGGCAT-TCTG-GA-ATCCATGGTA-TCGATACCTTTCTCCTAG
* * ** * * * * *** * * * *
37127 TGCC-CTTTTTCT-TAC-CT-G-ACTAAGGAGCTTGGTTAT-AATATACACAAGCACCCATTTAG
56 TACCGATACTTCTATTCTATGGTA-TCAGTA-CTCCCTT-TCAGTAT---CGA-TA-CCATTT-C
* * * * * * ** * * *
37186 TACACATAC--CATACAAATGT-TAG-TA--TATTATC-TAACATTTATA-CTTTA-G--TAATA
112 T-C-CAT-CTGGATTCCAAGGTATCGATACCT-TTCTCTTAGTATTGATATCTTTATGCCAAATG
* * * * * * * * * * * *
37240 CTCA--AAAGTACTAATACTTTTAATTTCTATAACA--ACTTCAACCTATCTTATAATTCCTGAC
173 CACAGTTAGGCATTTAT-C-TTTCATTT-TAAAACAGTTCTT-AA---A-C-TAAAAAT--T-AT
* ** * * * * * * * * *
37301 TCAATAGTATCGGTACC-CATACTATGAT-ATCGATACT-TCAATACTACGATACCGATACTTCC
226 TC-ATAATATCAATTCCACACAC-ATTATAAAC-ATA-TATC-ATA-TAAGGTA---AAACATAC
* ** * * * * * * **
37363 TTTCAGTATCGATACCATTT-CGGT---ATTA-TGGAA---TCCAT-AGTATCGATACTTCTATA
282 ATT-A--ATTTA-AACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA--ACCCATA-TAAT-TA
* * * * * * * ** *
37419 CTATGGTATCGATACTC-CCT--T-T-CAGTA-T--CGATACAATTTAGGCATTATGGAATCCAT
339 CAAT-ATAT-G-CACTCACCTAATATACTGTAGTGACG-TCCAA-CTA--C-TCA-ACAA--CTT
* * * * * * * * ** * ** *
37476 GGT-ATCGATACCTTTCTCCTAGTACC-GA-T-A-CATCTAT-TTTATGGTAT-CAGTA-CTCCC
393 TGTCCTTG--CCCTTT-TTCT--TACCTGACTAAGGAACT-TGGTTATAATCTACACAAGCACCC
* * ** * ***
37533 -TTTCAGTATC-GATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTGCT
452 ATTT-AGTA-CACATACCA----TACAAAT-G-TT---A-GTAT--AT---TATCTAACA-T--T
* * * * * *
37596 GATATCTTTATGCCAA-A-TGC-ATAGTTAGGCATTAAT-C-TTTCATTT-TAAAAC-AGTTCTT
497 TATA-CTTTA-G-TAATACT-CAAAAG-TA--C--TAATACTTTTAATTTCTATAACAACTTC--
* * * ** * * * *
37654 AA---A-C-TAAAATT-AT---TC-ATAATATCAAT-TCCACACATATTATAAAC-ATA-TATC-
551 AACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATAC-TATGAT-ATCGATACT-TCT
* * * * *** * ** * * * * *
37705 ATATTAAGTAAAAC-ATACATTAATTTAAACATTTGAGGTGGACTTATTGT-GAGTCTCCCT-CA
613 ATACTACG-ATACCGATAC-TCCCTTTCAGTA-TCGA--T--AC-CATT-TCG-GTAT-TCTGGA
* * ** * * * *
37767 ACCCATA-TAATTAC-A-ACATATAGACTCACCTGATATGCTTTAGTGACGTCTA-ACTACTCAA
667 ATCCATAGT-A-T-CGATACCT-T----TCTTCT-A-AT-ATTGA-T-ACTTCTATACTA-T--G
** * * * *
37828 CAACTTTG-TCCTTGCCTTTTTTCTT
716 GTA--TCGATAC-T-CC--CTTTC-A
* * ** * * * * * * *
37853 GCCTGACTCGATAGCTTGGTTA-TAATCTACATAAGCACCCAT-TTAGTTCCCATACCATACAAA
1 G--T-A-TCGATACCAT--TTAGGCAT-T-C-T-GGAATCCATGGTA--T-CGATACCTTTC---
** *** * * * ** * * *
37916 TGTTAGTATATTATCTAACATT-TATACTTTAGCAATACTCAAAAGTACTAATACTTTTAATTTC
50 TCCTAGTA-CCGA--T-AC-TTCTATTCTAT-G--GTA-TC---AGTACT--CCCTTTCAGTATC
* * * * ** * * * * * *
37980 TATAACAACTTCAACCTATCTTATAATTCCTGGCTCAGTAGTATCGGTACCCATACT-ATGGTAT
101 GAT-ACCATTTC-TCC-ATC-T-GGATT-C---C-AAG--GTATCGATA-CCTTTCTCTTAGTAT
* * * * * * ** ** * * * *
38044 CGATA-CTTCTATACTACGAT--ACTGATA--C---TCCCTTTCAGTATCGATACCATTTCGGTA
153 TGATATCTT-TATGCCA-AATGCACAGTTAGGCATTTATCTTTCA-T-TTTAAAACAGTTC-TTA
** ** * * * * * * * * **
38101 TTCT-GGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATAC-CTTTCTTCTAGTATTGATA
213 AACTAAAAAT---TA-T-TC-ATA---AT-ATC-AAT-TCCACACACATT-AT-AAACA-T-ATA
** * * * ** * *
38164 CTTCTATACTTTGGTATCGATAC-TCCCTTTCAGTATCGATACCATTT-AGGCATTCTGGAATCC
262 --TC-ATA-TAAGGTA---AAACAT-ACATT-A--ATTTA-AACATTTGAGG-----TGGAAT-T
* * * * * * * *
38227 ATGGTATCGATACCATTCTCCT-AGTACCGATACTTCTATT-CTATGGTATCAGTACTC-CCT-T
309 ATTGTA-AG-T--C--TC-CCTCA--ACCCATA--T-AATTACAAT-ATAT--GCACTCACCTAA
* * * * * * *
38288 TCAGTA-TCGATA-TCATTTC-TCCATCTGGA-T-TACAAGGTATCGATACCTTTCTCTTAGTAT
359 T-A-TACT-G-TAGTGA---CGTCCAACT--ACTCAACAA-CT-TTG-T-CCTTGCCCTT--T-T
** * * * * * * ***** ** * ** *
38348 TGATATCTTTATGCCAAATGCACAGTTAGGCCTT-T-ATCTTTCATTTTAAAACAGTTCTTAAAC
408 TCTTA-C---CTGACTAA-GGA-ACTT-GG--TTATAATC-TACACAAGCACCCATTTAGTACAC
* * * * * * * *
38411 -TA--A-A-AATTATTCA-TAATATCAATTCCACACACATTATAAACATATA-TCATA-T--AAG
463 ATACCATACAAATGTT-AGT-ATAT-TA-T-C-TA-ACATT-TATAC-TTTAGTAATACTCAAAA
** * ** ** * * * **
38466 GTAAAACATAC-ATTAA-TT-TA-AAC-A-TTTGAGGTGGAATTATTGTAAGT-CTCCCTCAACC
519 GTACTA-ATACTTTTAATTTCTATAACAACTTCAACCT---A-TCTTATAATTCCTGGCTCAA--
* *** * * * * * * *
38524 CA-TATAATTA-CAATA-TATGCACTCTCCTTATA-TACTGTAGTGACG-T-CCAACTACTCGAC
577 TAGTATCGGTACCCATACTATG-A-TAT-C-GATACTTCTATACT-ACGATACCGA-TACTC--C
** * * * * * * * ** *
38583 AACTTT--G--TCCTTGCC-CTT---T-TTCT--TA-CC-TGACTA-AG-GAGCTTGGTTATAAT
634 --CTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCAT-AGTATCGATACCTTTCTTCTAAT
* ** ** * * * **
38633 A-T-ACACAAGC-ACCCATTTAGTA-CACATACCATACAAATGTT-A
696 ATTGATAC-TTCTATAC-TATGGTATC-GATA-C-T-C-CCT-TTCA
** * ** * ** * * * *
38675 GTATATTATCTAACATTTATAC-TT-TAGTAATACTCAAAAGTA-CTAATACTTTTAATTTCTA-
1 GTAT-CGA--TACCATTTAGGCATTCT-GGAAT-C-C-ATGGTATC-GATACCTTT--CTCCTAG
* * * * * * * *
38736 TAACAACTTCAACCTATCTATACCATTTCGGTATTATGGAAT-CC-AT-AGTATCGATA-C--TT
56 TACCGA--T--A-CT-TCTAT-TC-TAT-GGTATCA-GTACTCCCTTTCAGTATCGATACCATTT
* ** * * **
38795 CT--A--T--ATT--ATGGTATCGATA-CTCCCT-TTCAGTATCGATA-CAATTTA-GGCATTCT
111 CTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTT-AGTATTGATATC--TTTATGCCA-AAT
* * * * * ** ** * * ** ** *
38848 GGA-A-TCCATGGTATCGATACCTTTC-TCCTAGTACCGATACATCTATTCTATGGTATCAGTAC
172 GCACAGT-TA-GGCAT--TTATCTTTCATTTTAAAACAG-TTC-T-TAAACTA----AAAATTA-
* * * * * * * ** * * **** **
38910 TCCCTTTCAGTATCGATACCATTTCTC-CATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGT
225 T-TC-AT-AATATCAATTCCA---CACACAT-T--A-T-AAACATAT--AT-CATATAAGGTAAA
* ** ** * * ** * * *
38974 ACTGATATC-TTTATGCCAAATGCATAGTT-AGGCATTTATCTTTCATTTTAAAACAGTTCTTAA
276 AC--ATA-CATTAAT-TTAAA--CAT--TTGAGG--TGGA--ATT-ATTGTAAGTC--TCCCTCA
** * * * * * * * * * * * ** *
39037 ACTAAAATTATTCATAATATCAATTC-CACACATATTATAAACATATATCATATTAAGTAAAATA
326 ACCCATATAATT-ACAATAT--ATGCACTCACCTA--ATATAC---TGT-A-GTGACGTCCAA-C
* * *** ** * * * * ** *** ** *
39101 TACATTAATTTAAACATTTG-AGGTGGACTTATTGTGAGTCTCCCTCAACCCA-TATAATTACAA
380 TAC-TCAA---CAAC-TTTGTCCTTGCCCTTTTTCTTA-CCTGACT-AAGGAACT-TGGTTATAA
* * ** * * * * *
39164 -CATATAGACTCACCTGATATGCTCTAGTGACGTCTAACTACCCA-ACAACTTTGTCCTTGCCTT
437 TC-TACACAAGCACC---CAT--T-TAGT-AC-AC--A-TA-CCATACAA--ATGT--TAG--TA
* * * ** * * * * * *** ** * * * *
39227 TTTTCTTGCCTGAC-TCGATAGC-TTGGTTATAATCTACA-TAAGCACCCATTTAGTTCCCAT-A
483 TATT-AT--CTAACATTTATA-CTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAA
* * * * * * ** * * **
39288 CCA-TACAA---ATGTTATTATATT-AT--CT-AACATTTATACTTTAGCAATACTCAAAAGTA-
544 CAACTTCAACCTATCTTA-TA-ATTCCTGGCTCAATA-GTAT-CGGTACCCATACT-ATGA-TAT
* * * * * * *
39344 CTAATACTTTTA-ATTTCTATAAC-A-ACTTCAACCTATC--T-T--ATA--A-TTC------CT
603 C-GATACTTCTATACTACGATACCGATAC-TC--CCTTTCAGTATCGATACCATTTCGGTATTCT
* * * * * * * * * * *
39392 GG-CT-CAGTAGTATCGGTACCCATAC-TATGATATCGAAACTTCTATACTACGATACCGATACT
664 GGAATCCA-TAGTATCGATA-CCTTTCTTCTAATATTGATACTTCTATACTATGGTATCGATACT
39454 CCCTTTCA
727 CCCTTTCA
* * * * * *
39462 GTATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* * *** * *
39527 TCAATACTATGGTATC-GATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATG
66 TCTATTCTATGGTATCAG-TACTCCCTTTCAGTATCGATACCATTTCTCCA-TCTGGATTCCAAG
* ** * * * **
39591 GTATCGATACCTTTCTCCTAGTACCGATA-CTTCTAT-TC-TATGGTATCAG-TA--C---TCCC
129 GTATCGATACCTTTCTCTTAGTATTGATATCTT-TATGCCAAAT-GCA-CAGTTAGGCATTTATC
** * * * * * ** * * * * ** *
39647 TTTCAGTATCGATACCATTTCTTCATCT--GGA-T-TCCA-AGGTATCGATACCTTTCTCTTAGT
191 TTTCA-T-TTTAAAACAGTTCTTAAACTAAAAATTATTCATA-ATATC-A-A--TTCCACACA-C
* * * * ** * * *
39707 ATTGAT-ATC-TTTATGCCAAATGCACA-GTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTA
248 ATT-ATAAACATATAT--CATAT--A-AGGTAAAACA--TA-CATT-AATTT-AAACA--T-TTG
** ** * * ** * * * **
39769 AACTAAAAATTATTCATAA-TATCAATTCCACACACATTATAA--AC-ATATAT-CATATAAGGT
299 AGGT-GGAATTATT-GTAAGTCTC-CCT-CA-ACCCA-TATAATTACAATATATGCA-CTCACCT
* * * ** ** * ** *
39829 AAAACATACAT-TAATTTA--AACATTTGAGCTGGAATTA-TTGTAAGTCTCTCTCAACCCATAT
357 --AATATAC-TGT-AGTGACGTCCAACT-A-CT-CAACAACTT-T--GTC-CT-T--GCCC-T-T
* * * * * * *
39890 AATTACAATATATGCACTCACCTAA-TATACTGTAGTGACGTCCAA-CTACTC-GGCAACTTTGT
406 --TTTC--T-TA--C-CTGA-CTAAGGA-ACT-TGGTTA--T--AATCTACACAAGC-AC-----
** *** * * * *
39952 CC-TTTCCCTTTTTCTTACC-TGACTAAGGA-GCTTGGTTATAATCTACACAAGCACCCATTTAG
450 CCATTT--AGTACACATACCAT-AC-AA--ATG-TTAG-TAT-AT-TA-TCTA--A--CA--T--
40014 TACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTAC
496 T-----T---ATAC---T-TTAGTA-A-TA-CT--CA---A-A----AG---TACT---AA-TAC
** *
40079 TAATACTTT-TAATTTCTTTAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGT
529 TTTTAATTTCT-A------TAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGT
* *
40143 ACCCATCCTATGATATCGATACTTCTATACTACGATACAGATACTCCCTTTCAGTATCGATACCA
587 ACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCA
40208 TTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTA
652 TTTCGGTATTCTGGAATCCATAGTATCGATACC--T-TTC---T-TC--TA----------A-TA
40273 TTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
697 TTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
40311 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* * *
40376 TCTATTCTATGGTATCAGTACTCCCTATCAGTATCGATACCATTTCTCAATCAGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
40441 ATTGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTACGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
* *
40506 TTTTAAAACAGTTCTCAAACTAAAAATTATTCATAATATCAATTCCACACGCATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
40571 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
40636 ACCCATATAATTACAATATATGCACTCACCTAATATACTATAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* *
40701 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
40766 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
*
40831 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCAG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
40896 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
40961 ATTTCGGTATTATGGAATCC--A-TA--G-TA-------TC-------GATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATG
41006 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* * * * *
41025 GTATCCATACAATTTAGGCTTTCTGGAATCCATGGTGTCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
41090 TCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
41155 ATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
* *
41220 TTTTAAAACAGGTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
41284 ATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTGTCCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* * * * *
41348 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * *
41412 ACTTTGTCCTTGCCTTTTTTCTTGCCTGACT--CGATAGCTTGGTTATAATCTACATAAGCACCC
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA-A-CTTGGTTATAATCTACACAAGCACCC
* * *
41475 ATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAA
452 ATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
*
41540 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAGTAGTA
517 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA
* * *
41605 TCGGTACCCATACTATGGTATCGATACTTCTATACTACGATACTGATACTCCCTTTCATTATCGA
582 TCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
41670 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATATCTTTCTTC
647 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACC--T-TTC---T-TC--TA---------
41735 TAGTATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
694 -A-TATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
* * *
41778 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATATCATTCTCCTAGTACTGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
41843 TCAATTCTATGGTATCAGTACTCCCTTTCAGTATCGATATCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
41908 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCCTTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
41973 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
42038 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* * *
42103 ACCCATATAATTACAATATATGCACTCTCCTTATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* *
42168 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
42233 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
*
42298 ACTAATACTTTTAATTTATATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
42363 TACCCATACTATGATATCGATACTT-TAATACTACGATACCGATACTCCCTTTCAGTATCGATAC
586 TACCCATACTATGATATCGATACTTCT-ATACTACGATACCGATACTCCCTTTCAGTATCGATAC
* *
42427 CATTTCAGTATTATGGAATCCATAGTATCGATA-----CTTC---------TA----TAT--TAT
650 CATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTAT
42472 GGTATCGATACTCCCTTTCA
715 GGTATCGATACTCCCTTTCA
* * *
42492 GTATCGATACAATTTAGGCATTCTGGAATCCATGGTACCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
42557 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
42622 ATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
42687 TTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
42751 ATCATATTAA-GTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* * * * * *
42815 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCTCTAGAGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * *
42879 ACTTTGTCCTTGCCTTTTTTCTTGCCTGACT--CGATAGCTTGGTTATAATCTACATAAGCACCC
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA-A-CTTGGTTATAATCTACACAAGCACCC
* * *
42942 ATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAA
452 ATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
*
43007 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAGTAGTA
517 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA
*
43072 TCGGTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
582 TCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
* * * *
43137 TACCATTTCGGTATTCTGGAATCCAAAGTATCGATACCTTTCTTCTAGTATCGATACTTCAATAC
647 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATAC
43202 TATGGTATCGATACTCCCTTTCA
712 TATGGTATCGATACTCCCTTTCA
43225 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
43290 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
43355 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
43420 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
43485 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
*
43550 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * *
43615 TTTGTCATTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
43680 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
43745 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* * *
43810 TACCCATACTATGATATCGATACTTCAATACTACGATACCGATACTTCCGTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
* *
43875 ATTTTGGTATTATGGAATCC--A-TA--G-TA-------TC-------GATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATG
43920 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* * *
43939 CTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
44004 TCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
44069 ATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTT
131 ATCGATACC--TT-T-C-TC-----T------TA--G------------TA-T--TGATATCTTT
* *
44134 ATGCCAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAATTCTTAAACT-AAAATTATTC
163 ATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTC
* *
44198 ATAATATCAATTCCACACATATTATAAACATATATCATATTAA-GTAAAACATACATTTATTTAA
228 ATAATATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAA
* * * *
44262 ACATTTGAGGTGGACTTATTGTGAGTCTCCCTTAACCCATATAATTACAACATATAG-ACTCACC
292 ACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATAT-GCACTCACC
* * * * * *
44326 TGATATGCTTTAGTGACGTCTAACTACTCAACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACT-
356 TAATATACTGTAGTGACGTCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTA
* * * *
44390 -CGATAGCTTGGTTATAATCTACATAAGCACCCATTTAGTTCCCATACCATACAAATGTTAGTAT
421 AGGA-A-CTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTAT
*
44454 ATTATCTAACATTTATACTTTAGCAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACT
484 ATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACT
* *
44519 TCAACCTATCTTATAATTCCTGGATCAGTAGTATCGGTACCCATACTACGGTATCGATACTTCTA
549 TCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCC--A-TAC--TAT-G---------
* *
44584 TACTACGGTATCGATACTTCAATACTACGATACTGATACTCCCTTTCA-TAATCGATACCATTTC
599 ----A---TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGT-ATCGATACCATTTC
44648 GGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATTGA
656 GGTATTCTGGAATCCATAGTATCGATACC--T-TTC---T-TC--TA----------A-TATTGA
44713 TACTTCTATACTATGGTATCGATACTCCCTTTCA
701 TACTTCTATACTATGGTATCGATACTCCCTTTCA
*
44747 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
44812 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATATCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
44877 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTACGCCTTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
44942 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
45007 ATCATATTAA-GTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* * * * * * *
45071 ATCCCATATAATTACAACATATAG-ACTCACCTGATATGCTCTAGAGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * * *
45135 ACTTTGTGCTTGCCTTTTTTCTTGCCTGACT--CGATAGCTTGGTTATAATCTACATAAGCACCC
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA-A-CTTGGTTATAATCTACACAAGCACCC
* * *
45198 ATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAA
452 ATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
*
45263 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAGTAGTA
517 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA
*
45328 TCGGTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
582 TCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
* * *
45393 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCAATAC
647 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATAC
45458 TATGGTATCGATACTCCCTTTCA
712 TATGGTATCGATACTCCCTTTCA
45481 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
45546 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
45611 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
45676 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
45741 ATCATATAAGGTAAAACATACATTAATTT-AACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
*
45805 ACCCATATAATTACAATATATGCACTCACCT-A-ATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * *
45868 TTTGTCATTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
45933 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
45998 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* *
46063 TACCCATACTATGATATCGATACTTCAATACTACGATACCGATACTTCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
* *
46128 ATTTTGGTATTATGGAATCC--A-TA--G-TA-------TC-------GATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATG
46173 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* *
46192 GTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
46257 TCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
46322 ATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
46387 TTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * * *
46451 ATCATATTAA-GTAAAACATACATTTATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTT
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* * * * *
46515 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * *
46579 ACTTTGTCCTTGCCTTTTTTCTTGCCTGACT--CGATAGCTTGGTTATAATCTACATAAGCACCC
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA-A-CTTGGTTATAATCTACACAAGCACCC
* * *
46642 ATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAA
452 ATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
* * *
46707 AAGTACTAATACTTTTAATTTATATAACAACTTCAACCTATCTTATAATTCCTGGATCAGTAGTA
517 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA
* * * * *
46772 TCGGTACCCATACTACGGTATCGATACTTCTATACTACGATACTGATACGCCCTTTCATTATCGA
582 TCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
46837 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTC
647 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACC--T-TTC---T-TC--TA---------
46902 TAGTATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
694 -A-TATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
46945 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
47010 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATATCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
*
47075 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCCTTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
47140 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
47205 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* * * *
47270 ACTCATATAATTACAATATATGCACTCTCCTTATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * *
47335 GTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
* *
47400 AGTACACAAACCATACAAATGTTAGCATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
47465 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
*
47530 TACCCATACTATGATATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
* *
47595 ATTTCAGTATTATGGAATCCATAGTATCGATA-----CTTC---------TA----TAT--TATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATG
47640 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
* *
47659 GTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
47724 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATTTGAATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
** * *
47789 ATCGATACCTTTCTCTTAGTACAGATATGTTTATGCCAAATGCATAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
47854 TTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
47918 ATCATATTAA-GTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* * * ** * *
47982 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCCCTAGAGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * * *
48046 ACTTTGTCCTTGCCTTTTTTCTTGCCTGACT--CGATAGCTTGGTTATAATCTACATAAGCACTC
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA-A-CTTGGTTATAATCTACACAAGCACCC
* * *
48109 ATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAA
452 ATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
*
48174 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAGTAGTA
517 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA
*
48239 TCGGTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
582 TCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
* * * *
48304 TACCATTTCGGTATTCTGGAATCCATAGTATCAATACCTTTCTTCTAGTATCGATACTTCAATAC
647 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATAC
*
48369 TATGGCATCGATACTCCCTTTCA
712 TATGGTATCGATACTCCCTTTCA
* *
48392 GTATCGATACCAATTAGGCATTCTGGAATACATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
48457 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
48522 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
48587 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
48652 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGCTGGAATTATTGTAAGTCTCTCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
**
48717 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGGCAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* *
48782 TTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
48847 AGTACACATACCATACAAATGTTA-TATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
48911 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* *
48976 TACCCATCCTATGATATCGATACTTCTATACTACGATACAGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
49041 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGT
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACC--T-TTC---T-TC--TA----------A-T
49106 ATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
696 ATTGATACTTCTATACTATGGTATCGATACTCCCTTTCA
*
49145 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* * *
49210 TCTATTCTATGGTATCAGTACTCCCTATCAGTATCGATACCATTTCTCAATCAGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
49275 ATTGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTACGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
49340 TTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
49405 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
* *
49470 ACCCATATAATTACAATATATGCACTCACCTAATATACTATAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* *
49535 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
49600 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
*
49665 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCAG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
*
49730 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTGAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
49795 ATTTCGGTATTATGGAATCC--A-TA--G-TA-------TC-------GATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATG
*
49840 GTATCGATACTCCCTCTCA
716 GTATCGATACTCCCTTTCA
* * *
49859 GTATCGATACAATTTAGGCATTCTGGAATCCATGGTGTCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
49924 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * ** *
49989 ATCGATACCTTTCTCTTAGTACTGATATCTTTACGTTAAATGCATAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
50054 TTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * *
50118 ATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTTCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTC
* * * * *
50182 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * *
50246 ACTTTGTCCTTGCCTTTTTTCTTGCCTGACT--CGATAGCTTGGTTATAATCTACATAAGCACCC
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA-A-CTTGGTTATAATCTACACAAGCACCC
* * *
50309 ATTTAGTTCCCACACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
452 ATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
50374 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA
517 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA
* * *
50439 TCGGTACCCATACTATGATATCGATACTTCTATACTATGGTATC-AGTACTCCCTTTCAGTATCG
582 TCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGA-TACTCCCTTTCAGTATCG
*** * *
50503 ATACCATTTCTCCA-TCTGGATTCCA-AGGTATCGATACCTTTC-TCTTAGTATTGATA
646 ATACCATTTCGGTATTCTGGAATCCATA-GTATCGATACCTTTCTTC-TAATATTGATA
50559 TCTTTATGCC
Statistics
Matches: 17496, Mismatches: 2071, Indels: 3144
0.77 0.09 0.14
Matches are distributed among these distances:
710 66 0.00
711 319 0.02
712 11 0.00
713 1950 0.11
714 1793 0.10
715 4 0.00
716 13 0.00
717 4 0.00
718 15 0.00
719 7 0.00
720 6 0.00
721 4 0.00
724 3 0.00
725 2 0.00
726 1 0.00
727 4 0.00
728 6 0.00
729 3 0.00
730 2 0.00
731 293 0.02
732 9 0.00
733 909 0.05
734 1633 0.09
735 2 0.00
736 8 0.00
737 4 0.00
739 4 0.00
740 3 0.00
741 2 0.00
742 6 0.00
743 5 0.00
744 8 0.00
745 8 0.00
746 351 0.02
747 82 0.00
748 12 0.00
749 9 0.00
750 8 0.00
751 15 0.00
752 28 0.00
753 1268 0.07
754 4542 0.26
755 19 0.00
756 16 0.00
757 7 0.00
758 6 0.00
759 16 0.00
760 28 0.00
761 24 0.00
762 24 0.00
763 53 0.00
764 69 0.00
765 55 0.00
766 39 0.00
767 35 0.00
768 98 0.01
769 34 0.00
770 35 0.00
771 42 0.00
772 48 0.00
773 40 0.00
774 56 0.00
775 94 0.01
776 392 0.02
777 32 0.00
778 48 0.00
779 33 0.00
780 50 0.00
781 25 0.00
782 36 0.00
783 23 0.00
784 48 0.00
785 44 0.00
786 45 0.00
787 43 0.00
788 31 0.00
789 21 0.00
790 29 0.00
791 42 0.00
792 44 0.00
793 40 0.00
794 60 0.00
795 40 0.00
796 36 0.00
797 31 0.00
798 28 0.00
799 26 0.00
800 31 0.00
801 25 0.00
802 29 0.00
803 26 0.00
804 35 0.00
805 39 0.00
806 36 0.00
807 32 0.00
808 197 0.01
809 42 0.00
810 20 0.00
811 15 0.00
812 12 0.00
813 21 0.00
814 41 0.00
815 40 0.00
816 48 0.00
817 34 0.00
818 20 0.00
819 25 0.00
820 29 0.00
821 18 0.00
822 9 0.00
823 11 0.00
824 20 0.00
825 18 0.00
826 16 0.00
827 9 0.00
828 58 0.00
829 13 0.00
830 14 0.00
831 16 0.00
832 32 0.00
833 2 0.00
834 13 0.00
835 20 0.00
836 35 0.00
837 14 0.00
838 20 0.00
839 23 0.00
840 8 0.00
841 9 0.00
842 7 0.00
843 15 0.00
844 9 0.00
845 5 0.00
846 6 0.00
847 6 0.00
848 91 0.01
849 158 0.01
850 16 0.00
851 20 0.00
852 34 0.00
853 23 0.00
854 19 0.00
855 17 0.00
856 21 0.00
857 4 0.00
858 10 0.00
859 1 0.00
860 2 0.00
861 3 0.00
862 330 0.02
863 1 0.00
864 2 0.00
865 2 0.00
866 7 0.00
867 3 0.00
868 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (734 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCA
ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAACTTGGTTATAATCTACACAAGCACCCATTT
AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAATATTGATACTTCTATACTATG
GTATCGATACTCCCTTTCA
Found at i:30117 original size:20 final size:20
Alignment explanation
Indices: 30092--30143 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
30082 TTGGAATCCA
30092 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
30112 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
30132 TAGTATTGATAC
1 TAGTATCGATAC
30144 TACTATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:30202 original size:115 final size:115
Alignment explanation
Indices: 30024--30238 Score: 322
Period size: 115 Copynumber: 1.9 Consensus size: 115
30014 CTATGATATC
* * * *
30024 GATACTTCTATACTACGATACCAATACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAAT
1 GATACTACTATACTACGATACCAATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * *
30089 CCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
* * * *
30139 GATACTACTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTACTATACTACGATACCAATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
30204 CCATGGTATCGATACCATTCTCCTAGTACCGATAC
66 CCATAGTATCGATACCATTCTCCTAGTACCGATAC
30239 TTCTATTCTA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
115 88 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (115 bp):
GATACTACTATACTACGATACCAATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
Found at i:30213 original size:95 final size:94
Alignment explanation
Indices: 30114--30331 Score: 287
Period size: 95 Copynumber: 2.3 Consensus size: 94
30104 CTTTCTTCTA
30114 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
30178 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** * *
30209 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
* ** *
30274 TGATACCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
30303 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
30332 TCTTTATGCC
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.32
95 69 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:30871 original size:20 final size:20
Alignment explanation
Indices: 30846--30897 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
30836 CTGGAATCCA
*
30846 TAGTATCGGTACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
30866 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
30886 TAGTATTGATAC
1 TAGTATCGATAC
30898 TACTATACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:30953 original size:115 final size:115
Alignment explanation
Indices: 30778--30992 Score: 331
Period size: 115 Copynumber: 1.9 Consensus size: 115
30768 CTATAATATC
* * *
30778 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAAT
1 GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * * *
30843 CCATAGTATCGGTACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
* * *
30893 GATACTACTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
30958 CCATGGTATCGATACCATTCTCCTAGTACCGATAC
66 CCATAGTATCGATACCATTCTCCTAGTACCGATAC
30993 TTCTATTCTA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 89 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (115 bp):
GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
Found at i:30967 original size:95 final size:94
Alignment explanation
Indices: 30868--31085 Score: 287
Period size: 95 Copynumber: 2.3 Consensus size: 94
30858 CTTTCTTCTA
30868 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
30932 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** * *
30963 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
* ** *
31028 TGATACCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
31057 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
31086 TCTTTATGCC
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.32
95 69 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:31625 original size:20 final size:20
Alignment explanation
Indices: 31600--31651 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
31590 CTGGAATCCA
*
31600 TAGTATCGGTACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
31620 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
31640 TAGTATTGATAC
1 TAGTATCGATAC
31652 TACTATACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:31707 original size:115 final size:115
Alignment explanation
Indices: 31532--31746 Score: 331
Period size: 115 Copynumber: 1.9 Consensus size: 115
31522 ATATAATATC
* * *
31532 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAAT
1 GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * * *
31597 CCATAGTATCGGTACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
* * *
31647 GATACTACTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
31712 CCATGGTATCGATACCATTCTCCTAGTACCGATAC
66 CCATAGTATCGATACCATTCTCCTAGTACCGATAC
31747 TTCTATTCTA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 89 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (115 bp):
GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
Found at i:31721 original size:95 final size:94
Alignment explanation
Indices: 31622--31839 Score: 287
Period size: 95 Copynumber: 2.3 Consensus size: 94
31612 CTTTCTTCTA
31622 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
31686 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** * *
31717 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
* ** *
31782 TGATACCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
31811 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
31840 TCTTTATGCC
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.32
95 69 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:32379 original size:20 final size:20
Alignment explanation
Indices: 32354--32405 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
32344 CTGGAATCCA
*
32354 TAGTATCGGTACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
32374 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
32394 TAGTATTGATAC
1 TAGTATCGATAC
32406 TACTATACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:32461 original size:115 final size:115
Alignment explanation
Indices: 32286--32500 Score: 331
Period size: 115 Copynumber: 1.9 Consensus size: 115
32276 CTATAATATC
* * *
32286 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAAT
1 GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * * *
32351 CCATAGTATCGGTACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
* * *
32401 GATACTACTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
32466 CCATGGTATCGATACCATTCTCCTAGTACCGATAC
66 CCATAGTATCGATACCATTCTCCTAGTACCGATAC
32501 TTCTATTCTA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 89 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (115 bp):
GATACTACTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
Found at i:32475 original size:95 final size:94
Alignment explanation
Indices: 32376--32593 Score: 287
Period size: 95 Copynumber: 2.3 Consensus size: 94
32366 CTTTCTTCTA
*
32376 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAG-TACTCCATTTCAGTA
* *
32440 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** * *
32471 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCATTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCATTTCAGTAT
** *
32536 CGATACCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
32565 GTATCGATACCTTT-TTCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
32594 TCTTTGTGCC
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 2 0.02
94 33 0.31
95 69 0.66
96 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTACTATACTATGGTATCAGTACTCCATTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:33159 original size:75 final size:75
Alignment explanation
Indices: 33036--33194 Score: 228
Period size: 75 Copynumber: 2.1 Consensus size: 75
33026 CATACTATGA
* * * *
33036 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATG
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCACTATCGATACAATTTAGGCATTATG
33101 GAATCCATAG
66 GAATCCATAG
* * * * *
33111 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCACTATCGATACAATTTAGGCATTCTG
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCACTATCGATACAATTTAGGCATTATG
*
33176 GAATCCATGG
66 GAATCCATAG
33186 TATCGATAC
1 TATCGATAC
33195 CTTTCTCCTA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (75 bp):
TATCGATACTTCAATACTACGATACCGATACTCCCTTTCACTATCGATACAATTTAGGCATTATG
GAATCCATAG
Found at i:33226 original size:95 final size:94
Alignment explanation
Indices: 33108--33307 Score: 267
Period size: 95 Copynumber: 2.1 Consensus size: 94
33098 ATGGAATCCA
* * * *
33108 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCACTATCGATACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCAATATCGATACAATTTAGCCA-
*
33172 TCTGGAATCCATGGTATCGATACCTTTCTCC
64 TCTGGAATCCAAGGTATCGATACCTTTCTCC
* * **
33203 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAATATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAATATCGATACAATTTAGCCATC
* *
33268 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTATCGATACCTTTCTCC
*
33297 TAGTACTGATA
1 TAGTACCGATA
33308 TCTTTATGCC
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
94 38 0.41
95 53 0.58
96 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAATATCGATACAATTTAGCCATC
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:33847 original size:20 final size:20
Alignment explanation
Indices: 33822--33873 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
33812 CTGGAATCCA
33822 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
33842 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
33862 TAGTATTGATAC
1 TAGTATCGATAC
33874 ATCTATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:33931 original size:115 final size:115
Alignment explanation
Indices: 33754--33968 Score: 340
Period size: 115 Copynumber: 1.9 Consensus size: 115
33744 CTATGATATC
* * *
33754 GATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAAT
1 GATACATCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * *
33819 CCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
* * *
33869 GATACATCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
1 GATACATCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
*
33934 CCATGGTATCGATACCATTCTCCTAGTACCGATAC
66 CCATAGTATCGATACCATTCTCCTAGTACCGATAC
33969 TTCTATTCTA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 90 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (115 bp):
GATACATCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
Found at i:33943 original size:95 final size:94
Alignment explanation
Indices: 33844--34061 Score: 287
Period size: 95 Copynumber: 2.3 Consensus size: 94
33834 CTTTCTTCTA
33844 GTATCGATACCTTTCTTCTAGTATTGATACATCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACATCTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
33908 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** * *
33939 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTAT
* ** *
34004 CGATATCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
34033 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
34062 TCTTTATGCG
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.32
95 69 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:34642 original size:95 final size:96
Alignment explanation
Indices: 34503--34748 Score: 354
Period size: 95 Copynumber: 2.6 Consensus size: 96
34493 CATACTATGA
* * * * *
34503 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGAAACCATTTCA-GTATTCT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCAGGCATTCT
* *
34567 GGAATCCATAGTATCGATACCTTTCTTCTAG
66 GAAATCCATAGTATCGATACCTTTCTCCTAG
34598 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTT-AGGCATTCT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCAGGCATTCT
*
34662 GAAATCCATGGTATCGATACCTTTCTCCTAG
66 GAAATCCATAGTATCGATACCTTTCTCCTAG
* * * *
34693 TACCGATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGCATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
34749 TCCATCTGGA
Statistics
Matches: 136, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
94 2 0.01
95 134 0.99
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.37
Consensus pattern (96 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCAGGCATTCT
GAAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:34777 original size:33 final size:34
Alignment explanation
Indices: 34735--34817 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 34
34725 CCGTTTCAGC
*
34735 ATCGATACCATTTCTCCA-TCTGGATTCCAAGGT
1 ATCGATACCATTTCTCCATTCTGGAATCCAAGGT
*** *
34768 ATCGATACCATTTAGGCATTCTGGAATCCATGGT
1 ATCGATACCATTTCTCCATTCTGGAATCCAAGGT
*
34802 ATCGATA-CTTTTCTCC
1 ATCGATACCATTTCTCC
34818 TAGTACCGAT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
33 20 0.50
34 20 0.50
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (34 bp):
ATCGATACCATTTCTCCATTCTGGAATCCAAGGT
Found at i:34803 original size:34 final size:33
Alignment explanation
Indices: 34735--34809 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 33
34725 CCGTTTCAGC
** *
34735 ATCGATACCATTTCTCCATCTGGATTCCAAGGT
1 ATCGATACCATTTAGCCATCTGGAATCCAAGGT
* *
34768 ATCGATACCATTTAGGCATTCTGGAATCCATGGT
1 ATCGATACCATTTAGCCA-TCTGGAATCCAAGGT
34802 ATCGATAC
1 ATCGATAC
34810 TTTTCTCCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 15 0.42
34 21 0.58
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (33 bp):
ATCGATACCATTTAGCCATCTGGAATCCAAGGT
Found at i:34867 original size:128 final size:128
Alignment explanation
Indices: 34638--34904 Score: 482
Period size: 128 Copynumber: 2.1 Consensus size: 128
34628 CTCCCTTTCA
34638 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
34703 TCTATTCTATGGTATCAGTACTCCGTTTCAGCATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGCATCGATACCATTTCTCCATCTGGATTCCAAG
* *
34766 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACTTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
34831 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGCATCGATACCATTTCTCCATCTGGATTCCAAG
34894 GTATCGATACC
1 GTATCGATACC
34905 TTTCTCTTAG
Statistics
Matches: 134, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
127 1 0.01
128 133 0.99
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGCATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:35504 original size:95 final size:94
Alignment explanation
Indices: 35365--35656 Score: 383
Period size: 95 Copynumber: 3.1 Consensus size: 94
35355 CATACTATGA
* * * *
35365 TATCGATACTTCTATACTACGATACCAATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATC-ATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
35430 GAATCCATAGTATCGATACCTTTCTTCTAG
65 GAATCCATAGTATCGATACCTTTCTTCTAG
* *
35460 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGAAACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATC-ATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* * *
35525 GAATCCATGGTATCGATACCATTCTCCTAG
65 GAATCCATAGTATCGATACCTTTCTTCTAG
* * **
35555 TACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCA-TCTG
1 TATCGATACTTCTATACTATGGTATCA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
35619 GATTCCA-AGGTATCGATACCTTTC-TCTTAG
65 GAATCCATA-GTATCGATACCTTTCTTC-TAG
*
35649 TATTGATA
1 TATCGATA
35657 TCTTTATGCC
Statistics
Matches: 172, Mismatches: 22, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
93 1 0.01
94 34 0.20
95 137 0.80
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (94 bp):
TATCGATACTTCTATACTATGGTATCATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGG
AATCCATAGTATCGATACCTTTCTTCTAG
Found at i:36004 original size:75 final size:75
Alignment explanation
Indices: 35881--36039 Score: 228
Period size: 75 Copynumber: 2.1 Consensus size: 75
35871 CATACTATGA
* * * *
35881 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATG
1 TATCGATACTTCTACACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
35946 GAATCCATAG
66 GAATCCATAG
* * * *
35956 TATCGATACTTCTACACTATGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTCTG
1 TATCGATACTTCTACACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
*
36021 GAATCCATGG
66 GAATCCATAG
*
36031 TGTCGATAC
1 TATCGATAC
36040 CTTTCTCCTA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (75 bp):
TATCGATACTTCTACACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
GAATCCATAG
Found at i:36071 original size:95 final size:94
Alignment explanation
Indices: 35953--36152 Score: 258
Period size: 95 Copynumber: 2.1 Consensus size: 94
35943 ATGGAATCCA
* * *
35953 TAGTATCGATACTTCTACACTATGGTATC-GATACTCCCTTTCAGTATCGATACAATTTAGGCAT
1 TAGTACCGATACATCTACACTATGGTATCAG-TACTCCCTTTCAGTATCGATACAATTTAGCCA-
* *
36017 TCTGGAATCCATGGTGTCGATACCTTTCTCC
64 TCTGGAATCCAAGGTATCGATACCTTTCTCC
** * **
36048 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTACACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
* *
36113 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTATCGATACCTTTCTCC
*
36142 TAGTACTGATA
1 TAGTACCGATA
36153 TCTTTATGCC
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
94 37 0.41
95 53 0.58
96 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.36
Consensus pattern (94 bp):
TAGTACCGATACATCTACACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:36735 original size:95 final size:94
Alignment explanation
Indices: 36594--36885 Score: 367
Period size: 95 Copynumber: 3.1 Consensus size: 94
36584 CATACTATGA
* * *
36594 TATCGATACTTCTATACTACGATA-CTGATACTCCCTTTCAGTATCGATATCATTTCGGTATTCT
1 TATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCGATACCATTTCGGTATTCT
36658 GGAATCCATAGTATCGATACCTTTCTTCTAG
65 GGAATCCATAGTATCGATACCTTTC-TCTAG
* * * *
36689 TATCGATACTTCAATACTATGGTATCGATACTCCCTTTCAGAATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
* *
36754 GAATCCATGGTATCGATACCTTTCCCCTAG
66 GAATCCATAGTATCGATACCTTT-CTCTAG
* * **
36784 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTCTCTA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGTATTCT
*
36847 GGATTCCA-AGGTATCGATACCTTTCTCTTAG
65 GGAATCCATA-GTATCGATACCTTTCTC-TAG
*
36878 TATTGATA
1 TATCGATA
36886 TCTTTATGCC
Statistics
Matches: 170, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
93 2 0.01
94 34 0.20
95 132 0.78
96 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (94 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
GAATCCATAGTATCGATACCTTTCTCTAG
Found at i:37345 original size:22 final size:22
Alignment explanation
Indices: 37319--37361 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
37309 ATCGGTACCC
* *
37319 ATACTATGATATCGATACTTCA
1 ATACTACGATACCGATACTTCA
37341 ATACTACGATACCGATACTTC
1 ATACTACGATACCGATACTTC
37362 CTTTCAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (22 bp):
ATACTACGATACCGATACTTCA
Found at i:37451 original size:75 final size:75
Alignment explanation
Indices: 37328--37486 Score: 237
Period size: 75 Copynumber: 2.1 Consensus size: 75
37318 CATACTATGA
* * * *
37328 TATCGATACTTCAATACTACGATACCGATACTTCCTTTCAGTATCGATACCATTTCGGTATTATG
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
37393 GAATCCATAG
66 GAATCCATAG
* * * *
37403 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
*
37468 GAATCCATGG
66 GAATCCATAG
37478 TATCGATAC
1 TATCGATAC
37487 CTTTCTCCTA
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (75 bp):
TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
GAATCCATAG
Found at i:37519 original size:95 final size:94
Alignment explanation
Indices: 37400--37592 Score: 253
Period size: 95 Copynumber: 2.0 Consensus size: 94
37390 ATGGAATCCA
* * *
37400 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCGATACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCAGTATCGATACAATTTAGCCA-
*
37464 TATGGAATCCATGGTATCGATACCTTTCTCC
64 TATGGAATCCAAGGTATCGATACCTTTCTCC
** * ** *
37495 TAGTACCGATACATCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATA
* *
37560 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTATCGATACCTTTCTCC
37589 TAGT
1 TAGT
37593 GCTGATATCT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
94 31 0.36
95 53 0.62
96 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATA
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:38052 original size:713 final size:713
Alignment explanation
Indices: 35800--38124 Score: 3972
Period size: 713 Copynumber: 3.2 Consensus size: 713
35790 AACATTTAAG
35800 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
1 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
*
35865 AGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
66 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
*
35930 CCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTACACTATGGTATCGATACTCCCTTTC
131 CCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTC
*
35995 AGTATCGATACAATTTAGGCATTCTGGAATCCATGGTGTCGATACCTTTCTCCTAGTACCGATAC
196 AGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATAC
36060 ATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
261 ATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
36125 TATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTC
326 TATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTC
*
36190 ATTTTAAAACAGTTCTTAAACTAAATTTATTCATAATATCAATTCCACACATATTATAAACATAT
391 ATTTTAAAACAGTTCTTAAACTAAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
*
36255 TTCATATTAAGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
456 ATCATATTAAGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
36320 ACCCATATAATTACAACATATAGACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACAAC
521 ACCCATATAATTACAACATATAGACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACAAC
*
36385 TTTGTCCTTGCCTTTTTTCTTGCCTGACTCGATAGCTTGATTATAATCTACATAAGCACCCATTT
586 TTTGTCCTTGCCTTTTTTCTTGCCTGACTCGATAGCTTGGTTATAATCTACATAAGCACCCATTT
36450 AGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
651 AGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
* *
36513 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTAAAATTCCTGGCTCAGTAGTATC
1 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
*
36578 GGTACCCATACTATGATATCGATACTTCTATACTACGATACTGATACTCCCTTTCAGTATCGATA
66 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
* *
36643 TCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCAATACTA
131 CCATTTCGGTATTATGGAATCCATAGTATCGATA--------C-----T---T-C-T--ATACTA
* *
36708 TGGTATCGATACTCCCTTTCAGAATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATAC
176 TGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATAC
* *
36773 CTTTCCCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATT
241 CTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATT
* *
36838 TCTCTATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCA
306 TCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCA
* *
36903 CAGTTAGGCATTTATCTTTCATTTTAAAACTGTTCTTAAACTAAAAATTATTCATAATATCAATT
371 TAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATT
* *
36968 CCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAAAATTTGAGGTG
435 CCACACATATTATAAACATATATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTG
* * * * * *
37032 GAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTA
499 GACTTATTGTGAGTCTCCCTCAACCCATATAATTACAACATATAG-ACTCACCTGATATGCTTTA
* * * * * *
37096 GTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACT-AAGGAGCTTGGT
563 GTGACGTCTAACTACTCAACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACTCGA-TAGCTTGGT
* * * *
37160 TATAATATACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATT
627 TATAATCTACATAAGCACCCATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATT
37225 TATACTTTAGTAATACTCAAAA
692 TATACTTTAGTAATACTCAAAA
*
37247 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGACTCAATAGTATC
1 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
* *
37312 GGTACCCATACTATGATATCGATACTTCAATACTACGATACCGATACTTCCTTTCAGTATCGATA
66 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
37377 CCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTC
131 CCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTC
*
37442 AGTATCGATACAATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATAC
196 AGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATAC
*
37507 ATCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
261 ATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
* *
37572 TATCGATACCTTTCTCTTAGTGCTGATATCTTTATGCCAAATGCATAGTTAGGCATTAATCTTTC
326 TATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTC
37637 ATTTTAAAACAGTTCTTAAACTAAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
391 ATTTTAAAACAGTTCTTAAACTAAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
37702 ATCATATTAAGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
456 ATCATATTAAGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
37767 ACCCATATAATTACAACATATAGACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACAAC
521 ACCCATATAATTACAACATATAGACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACAAC
37832 TTTGTCCTTGCCTTTTTTCTTGCCTGACTCGATAGCTTGGTTATAATCTACATAAGCACCCATTT
586 TTTGTCCTTGCCTTTTTTCTTGCCTGACTCGATAGCTTGGTTATAATCTACATAAGCACCCATTT
*
37897 AGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAAAA
651 AGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
*
37960 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAGTAGTATC
1 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
* *
38025 GGTACCCATACTATGGTATCGATACTTCTATACTACGATACTGATACTCCCTTTCAGTATCGATA
66 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
*
38090 CCATTTCGGTATTCTGGAATCCATAGTATCGATAC
131 CCATTTCGGTATTATGGAATCCATAGTATCGATAC
38125 CTTTCTTCTA
Statistics
Matches: 1502, Mismatches: 83, Indels: 54
0.92 0.05 0.03
Matches are distributed among these distances:
713 590 0.39
714 236 0.16
716 1 0.00
717 1 0.00
718 1 0.00
721 2 0.00
726 2 0.00
729 1 0.00
730 1 0.00
731 1 0.00
733 238 0.16
734 428 0.28
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (713 bp):
GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
CCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATACTCCCTTTC
AGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATAC
ATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
TATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTC
ATTTTAAAACAGTTCTTAAACTAAAATTATTCATAATATCAATTCCACACATATTATAAACATAT
ATCATATTAAGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
ACCCATATAATTACAACATATAGACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACAAC
TTTGTCCTTGCCTTTTTTCTTGCCTGACTCGATAGCTTGGTTATAATCTACATAAGCACCCATTT
AGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
Found at i:38138 original size:20 final size:20
Alignment explanation
Indices: 38113--38164 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
38103 CTGGAATCCA
38113 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
38133 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
38153 TAGTATTGATAC
1 TAGTATCGATAC
38165 TTCTATACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:38220 original size:115 final size:115
Alignment explanation
Indices: 38040--38259 Score: 334
Period size: 115 Copynumber: 1.9 Consensus size: 115
38030 CCATACTATG
* *
38040 GTATCGATACTTCTATACTACGATACTGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCT
1 GTATCGATACTTCTATACTACGATACTGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCT
* * *
38105 GGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTA
66 GGAATCCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTA
* ** *
38155 GTATTGATACTTCTATACTTTGGTA-TCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTC
1 GTATCGATACTTCTATACTACGATACT-GATACTCCCTTTCAGTATCGATACCATTTAGGCATTC
*
38219 TGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATAC
65 TGGAATCCATAGTATCGATACCATTCTCCTAGTACCGATAC
38260 TTCTATTCTA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
114 1 0.01
115 93 0.99
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.38
Consensus pattern (115 bp):
GTATCGATACTTCTATACTACGATACTGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCT
GGAATCCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTA
Found at i:38234 original size:95 final size:94
Alignment explanation
Indices: 38135--38352 Score: 278
Period size: 95 Copynumber: 2.3 Consensus size: 94
38125 CTTTCTTCTA
*
38135 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTTTGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAG-TACTCCCTTTCAGTA
* * *
38199 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATACAAG
* * ** *
38230 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAT
* ** *
38295 CGATATCATTTCTCCATCTGGATTACAAG
66 CGATACCATTTAGCCATCTGGAATACAAG
38324 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
38353 TCTTTATGCC
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 33 0.32
95 69 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATACAAG
Found at i:39562 original size:95 final size:95
Alignment explanation
Indices: 39422--39713 Score: 378
Period size: 95 Copynumber: 3.1 Consensus size: 95
39412 CATACTATGA
* * * * *
39422 TATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
39487 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * *
39517 TATCGATACTTCAATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
* *
39582 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * *
39612 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTC-TTCA-TC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGT-ATTC
*
39674 TGGATTCCA-AGGTATCGATACCTTTC-TCTTAG
64 TGGAATCCATA-GTATCGATACCTTTCTTC-TAG
*
39706 TATTGATA
1 TATCGATA
39714 TCTTTATGCC
Statistics
Matches: 172, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
93 1 0.01
94 35 0.20
95 136 0.79
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
GAATCCATAGTATCGATACCTTTCTTCTAG
Found at i:40253 original size:20 final size:20
Alignment explanation
Indices: 40228--40279 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
40218 CTGGAATCCA
40228 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
40248 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
40268 TAGTATTGATAC
1 TAGTATCGATAC
40280 TTCTATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:40335 original size:115 final size:115
Alignment explanation
Indices: 40160--40374 Score: 342
Period size: 115 Copynumber: 1.9 Consensus size: 115
40150 CTATGATATC
* *
40160 GATACTTCTATACTACGATACAGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAAT
1 GATACTTCTATACTACGATACAGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * *
40225 CCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
* *
40275 GATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAA
1 GATACTTCTATACTACGATA-CAGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAA
*
40339 TCCATGGTATCGATACCATTCTCCTAGTACCGATAC
65 TCCATAGTATCGATACCATTCTCCTAGTACCGATAC
40375 TTCTATTCTA
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
115 90 0.99
116 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (115 bp):
GATACTTCTATACTACGATACAGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
Found at i:40349 original size:95 final size:94
Alignment explanation
Indices: 40250--40467 Score: 278
Period size: 95 Copynumber: 2.3 Consensus size: 94
40240 CTTTCTTCTA
*
40250 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAG-TACTCCCTATCAGTA
* * * *
40314 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTT-CGCAATCAGGAATCCAAG
* * ** *
40345 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTATCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTATCAGTAT
* *
40410 CGATACCATTTCTCAATCAGGATTCCAAG
66 CGATACCATTTCGCAATCAGGAATCCAAG
*
40439 GTATTGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
40468 TCTTTATGCC
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.33
95 68 0.65
96 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTATCAGTAT
CGATACCATTTCGCAATCAGGAATCCAAG
Found at i:40999 original size:75 final size:75
Alignment explanation
Indices: 40910--41068 Score: 221
Period size: 75 Copynumber: 2.1 Consensus size: 75
40900 CATACTATGA
* * *
40910 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGG-TATTAT
1 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCCATACAATTTAGGCT-TTAT
40974 GGAATCCATAG
65 GGAATCCATAG
* * * *
40985 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCCATACAATTTAGGCTTTCTG
1 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCCATACAATTTAGGCTTTATG
*
41050 GAATCCATGG
66 GAATCCATAG
*
41060 TGTCGATAC
1 TATCGATAC
41069 CTTTCTCCTA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
75 73 0.99
76 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (75 bp):
TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCCATACAATTTAGGCTTTATG
GAATCCATAG
Found at i:41101 original size:95 final size:94
Alignment explanation
Indices: 40982--41181 Score: 240
Period size: 95 Copynumber: 2.1 Consensus size: 94
40972 ATGGAATCCA
* * * **
40982 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCCATACAATTTAGGCTT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCAGTATCCATACAATTT-CGCCA
* *
41046 TCTGGAATCCATGGTGTCGATACCTTTCTCC
64 TCTGGAATCCAAGGTATCGATACCTTTCTCC
** * * *
41077 TAGTACCGATACATCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCCATACAATTTCGCCATC
* *
41142 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTATCGATACCTTTCTCC
*
41171 TAGTACTGATA
1 TAGTACCGATA
41182 TCTTTATGCC
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
94 38 0.43
95 50 0.56
96 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCCATACAATTTCGCCATC
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:41562 original size:713 final size:715
Alignment explanation
Indices: 38750--50512 Score: 13421
Period size: 713 Copynumber: 16.0 Consensus size: 715
38740 AACTTCAACC
* *
38750 TATCTATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATATTATGGTATCGATAC
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
38815 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
66 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
38880 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
131 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
38945 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
196 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
39010 TATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTA
261 TATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACATATTA
* * *
39074 TAAACATATATCATATTAA-GTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGA
326 TAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAA
* * *
39138 GTCTCCCTCAACCCATATAATTACAACATATAG-ACTCACCTGATATGCTCTAGTGACGTCTAAC
391 GTCTCCCTCAACCCATATAATTACAACATAT-GCACTCACCTGATATACTGTAGTGACGTCCAAC
* * * * * *
39202 TACCCAACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAATCTACAT
455 TACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACAC
* * * *
39266 AAGCACCCATTTAGTTCCCATACCATACAAATGTTATTATATTATCTAACATTTATACTTTAGCA
519 AAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
39331 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
584 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
* *
39396 CAGTAGTATCGGTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTC
649 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTC
39461 AG
714 AG
39463 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTT
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA--------C-----T---T-C-T
*
39528 CAATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
48 --ATACTATGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGT
*
39593 ATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
111 ATCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
* *
39658 ATACCATTTCTTCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGC
176 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGC
*
39723 CAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
241 CAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
*
39788 TATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAACAT
306 TATCAATTCCACACATATTATAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACAT
* * * *
39852 TTGAGCTGGAATTATTGTAAGTCTCTCTCAACCCATATAATTACAATATATGCACTCACCTAATA
371 TTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGATA
** *
39917 TACTGTAGTGACGTCCAACTACTCGGCAACTTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGAG
436 TACTGTAGTGACGTCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAG
39982 CTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCT
501 CTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCT
*
40047 AACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTTTAACAACTTCAACCT
566 AACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCT
*
40112 ATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATCCTATGATATCGATACTTCTATACTACG
631 ATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACG
*
40177 ATACAGATACTCCCTTTCAG
696 ATACCGATACTCCCTTTCAG
*
40197 TATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCT-T-CTA--GTATCGAT
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA-C-TTCTATACTATGGTATCGAT
** * ** * *
40258 A---CCTTTC--T-TC--TAGTATTGATAC-TTCT---ATACTATGGTATCGATACTCCCTT-T-
64 ACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAAT-CCATGGTATCGATA--CCTTTCTC
* * ** * * * *
40309 C-AGTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGAT
126 CTAGTACCGATA-CATCTATTC--TATGGTAT-CA--GTA-C--T-CCCTT-T-C-AGTATCGAT
* ** * * * * * * *
40373 ACTTCTATTCTATGGTATCAGTACTCCCTATCA-GTATCGATACCATTTCTCAATCAGGATTCCA
178 AC--C-ATT-TCT-CCATCTGGA-TTCC-A--AGGTATCGATACC-TTTCTC--TTAGTACT-GA
* * * * * * * ***
40437 -AGGTATTGATACC--TTTC-T-CTTA-GTATTGATATCTTT-ATGCCAAATGCACAGTTACGCA
230 TA--TCTTTATGCCAAATGCATAGTTAGGCATT--TATCTTTCATTTTAAA---ACAGTT---C-
* * * ** * * * *
40495 TTTATCTTTCATTTTAAAA-CAGTTC-TCAAACTAAAAATTATTCATA-ATATCAATTCCACACG
284 TTAAAC--T-A----AAAATTA-TTCAT--AA-TATCAA-T-TCCACACATAT-TA-T--A-A-A
*
40557 CATTATAAACATATATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATT
330 CA-TAT-ATCAT-----AT-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATT
* * *
40622 GTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTATAGTGACGTCC
387 GTAAGTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGATATACTGTAGTGACGTCC
* *
40687 AACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATAC
452 AACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTAC
40752 ACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAG
517 ACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAG
40817 TAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGG
582 TAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGG
*
40882 CTCAATAGTATCAGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTT
647 CTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTT
40947 TCAG
712 TCAG
40951 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
* * *
41016 TCCCTTTCAGTATCCATACAATTTAGGCTTTCTGGAATCCATGGTGTCGATACCTTTCTCCTAGT
66 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
*
41081 ACCGATACATCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
131 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
41146 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
196 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
*
41211 TATCTTTCATTTTAAAACAGGTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTA
261 TATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACATATTA
* *
41275 TAAACATATATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGA
326 TAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAA
* * * *
41339 GTGTCCCTCAACCCATATAATTACAACATATAG-ACTCACCTGATATGCTTTAGTGACGTCTAAC
391 GTCTCCCTCAACCCATATAATTACAACATAT-GCACTCACCTGATATACTGTAGTGACGTCCAAC
* * * * *
41403 TACTCAACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAATCTACAT
455 TACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACAC
* * *
41467 AAGCACCCATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCA
519 AAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
41532 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
584 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
* * *
41597 CAGTAGTATCGGTACCCATACTATGGTATCGATACTTCTATACTACGATACTGATACTCCCTTTC
649 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTC
*
41662 AT
714 AG
*
41664 TATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCT-T-CTA--GTATCGAT
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA-C-TTCTATACTATGGTATCGAT
** * ** * *
41725 A-T--CTTTC--T-TC--TAGTATTGATAC-TTCT---ATACTATGGTATCGATACTCCCTT-T-
64 ACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAAT-CCATGGTATCGATA--CCTTTCTC
* * * * * * * *
41776 C-AGTATCGATAC--C-ATT-TA-GGCATTCTGGAAT-CC-AT-GGTATCGATATCA-TTCTCCT
126 CTAGTACCGATACATCTATTCTATGGTA-TCAGTACTCCCTTTCAGTATCGATACCATTTCTCC-
* * * ** * * *
41831 AGTACTGATACTTCAATTCTATGGTATCAGTACTCCCTTTCAGTATCGATA-TCATTTCTCCATC
189 A-T-CTG-GA-TTC----C-AAGGTATC-G-A-TACCTTTCTCT-TAG-TACTGATATCT---T-
* * * ***
41895 TGGATTCCAAGGTAT-CGATACCTTTCTCTTA-GTATTGATATCTTT-ATGCCAAATGCACAGTT
236 T--ATGCCAA---ATGC-ATA-------GTTAGGCATT--TATCTTTCATTTTAAA---ACAGTT
** * *
41957 AGGCCTTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACA
283 ----C-TTA------A-ACTAAAA-A-TTATT---C--ATAA-TA-TCA-A-------TTCCACA
*
42022 CACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATT
319 CATATTATAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATT
* * *
42086 ATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTCTCCTTATATACTGTAGTGACG
384 ATTGTAAGTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGATATACTGTAGTGACG
* *
42151 TCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATA
449 TCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATC
42216 TACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTT
514 TACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTT
*
42281 TAGTAATACTCAAAAGTACTAATACTTTTAATTTATATAACAACTTCAACCTATCTTATAATTCC
579 TAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCC
42346 TGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTT-TAATACTACGATACCGATACTC
644 TGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCT-ATACTACGATACCGATACTC
42410 CCTTTCAG
708 CCTTTCAG
* *
42418 TATCGATACCATTTCAGTATTATGGAATCCATAGTATCGATACTTCTATATTATGGTATCGATAC
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
*
42483 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTACCGATACCTTTCTCCTAGT
66 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
42548 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
131 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
42613 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
196 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
42678 TATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTA
261 TATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACATATTA
* * *
42742 TAAACATATATCATATTAA-GTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGA
326 TAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAA
* * * *
42806 GTCTCCCTCAACCCATATAATTACAACATATAG-ACTCACCTGATATGCTCTAGAGACGTCTAAC
391 GTCTCCCTCAACCCATATAATTACAACATAT-GCACTCACCTGATATACTGTAGTGACGTCCAAC
* * * * *
42870 TACTCAACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAATCTACAT
455 TACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACAC
* * *
42934 AAGCACCCATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCA
519 AAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
42999 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
584 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
* *
43064 CAGTAGTATCGGTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTC
649 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTC
43129 AG
714 AG
*
43131 TATCGATACCATTTCGGTATTCTGGAATCCAAAGTATCGATACCTTTCTTCTAGTATCGATACTT
1 TATCGATACCATTTCGGTATTATGGAAT-C-------C---A---------TAGTATCGATACTT
* *
43196 CAATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
46 CTATACTATGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGT
*
43261 ATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
111 ATCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
*
43326 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGC
176 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGC
*
43391 CAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
241 CAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
*
43456 TATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAACAT
306 TATCAATTCCACACATATTATAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACAT
* *
43520 TTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCTAATA
371 TTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGATA
* *
43585 TACTGTAGTGACGTCCAACTACTCGACAACTTTGTCATTGCCCTTTTTCTTACCTGACTAAGGAG
436 TACTGTAGTGACGTCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAG
*
43650 CTTGGTTATAATATACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCT
501 CTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCT
43715 AACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCT
566 AACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCT
*
43780 ATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCAATACTACG
631 ATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACG
* *
43845 ATACCGATACTTCCGTTCAG
696 ATACCGATACTCCCTTTCAG
*
43865 TATCGATACCATTTTGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
*
43930 TCCCTTTCACTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
66 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
*
43995 ACCGATACATCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
131 ACCGATACATCTATTCTAT-G-----GTA-------TC---A--G-T---A---CTCC--CT---
44060 TTCCAAGGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACT
166 TT-C-A-GTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACT
*
44125 GATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAATTCTTAAACT-A
228 GATATCTTTATGCCAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAA
44189 AAATTATTCATAATATCAATTCCACACATATTATAAACATATATCATATTAA-GTAAAACATACA
293 AAATTATTCATAATATCAATTCCACACATATTATAAACATATATCATATTAAGGTAAAACATACA
* * * *
44253 TTTATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTTAACCCATATAATTACAACATATA
358 TTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAACATAT-
* * * *
44318 G-ACTCACCTGATATGCTTTAGTGACGTCTAACTACTCAACAACTTTGTCCTTGCCTTTTTTCTT
422 GCACTCACCTGATATACTGTAGTGACGTCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTT
* * * * * *
44382 GCCTGACT-CGATAGCTTGGTTATAATCTACATAAGCACCCATTTAGTTCCCATACCATACAAAT
487 ACCTGACTAAG-GAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAAT
*
44446 GTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAAAAGTACTAATACTTTTAATTTCTA
551 GTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTA
* *
44511 TAACAACTTCAACCTATCTTATAATTCCTGGATCAGTAGTATCGGTACCCATACTACGGTATCGA
616 TAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCC--A-TAC--TAT-G-
* *
44576 TACTTCTATACTACGGTATCGATACTTCAATACTACGATACTGATACTCCCTTTCA-
674 ------------A---TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAG
*
44632 TAATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCT-T-CTA--GTATCGA
1 T-ATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA-C-TTCTATACTATGGTATCGA
** * ** * *
44693 TA---CCTTTC--T-TC--TAGTATTGATAC-TTCT---ATACTATGGTATCGATACTCCCTT-T
63 TACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAAT-CCATGGTATCGATA--CCTTTCT
* * * * * * *
44745 -C-AGTATCGATAC--C-ATT-TA-GGCATTCTGGAAT-CC-AT-GGTATCGATACCATTCTCCT
125 CCTAGTACCGATACATCTATTCTATGGTA-TCAGTACTCCCTTTCAGTATCGATACCATT-T-C-
** * * * ** * * *
44800 AGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATA-TCATTTCTCCATC
186 --T-CC-AT-C-TGGATTCCAAGGTATC-G-A-TACCTTTCTCT-TAG-TACTGATATCT---T-
* * * ***
44864 TGGATTCCAAGGTAT-CGATACCTTTCTCTTA-GTATTGATATCTTT-ATGCCAAATGCACAGTT
236 T--ATGCCAA---ATGC-ATA-------GTTAGGCATT--TATCTTTCATTTTAAA---ACAGTT
** * *
44926 ACGCCTTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACA
283 ----C-TTA------A-ACTAAAA-A-TTATT---C--ATAA-TA-TCA-A-------TTCCACA
* *
44991 CATATTATAAACATATATCATATTAA-GTAAAATATACATTAATTTAAACATTTGAGGTGGACTT
319 CATATTATAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATT
* * * * *
45055 ATTGTGAGTCTCCCTCATCCCATATAATTACAACATATAG-ACTCACCTGATATGCTCTAGAGAC
384 ATTGTAAGTCTCCCTCAACCCATATAATTACAACATAT-GCACTCACCTGATATACTGTAGTGAC
* * * * * *
45119 GTCTAACTACTCAACAACTTTGTGCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAA
448 GTCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAA
* * *
45183 TCTACATAAGCACCCATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATAC
512 TCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATAC
*
45248 TTTAGCAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATT
577 TTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATT
* *
45313 CCTGGCTCAGTAGTATCGGTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACT
642 CCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACT
45378 CCCTTTCAG
707 CCCTTTCAG
*
45387 TATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTT
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA--------C-----T---T-C-T
*
45452 CAATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAATCCATGGT
48 --ATACTATGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGT
*
45517 ATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
111 ATCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCG
*
45582 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGC
176 ATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGC
*
45647 CAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
241 CAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAA
*
45712 TATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTT-AACAT
306 TATCAATTCCACACATATTATAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACAT
*
45775 TTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCT-A-A
371 TTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGATA
* *
45838 TACTGTAGTGACGTCCAACTACTCGACAACTTTGTCATTGCCCTTTTTCTTACCTGACTAAGGAG
436 TACTGTAGTGACGTCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAG
*
45903 CTTGGTTATAATATACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCT
501 CTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCT
45968 AACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCT
566 AACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCT
*
46033 ATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCAATACTACG
631 ATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACG
*
46098 ATACCGATACTTCCTTTCAG
696 ATACCGATACTCCCTTTCAG
*
46118 TATCGATACCATTTTGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
46183 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
66 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
*
46248 ACCGATACATCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
131 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
46313 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
196 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
46378 TATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTA
261 TATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACATATTA
* * *
46442 TAAACATATATCATATTAA-GTAAAACATACATTTATTTAAACATTTGAGGTGGACTTATTGTGA
326 TAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAA
* * * *
46506 GTCTCCCTTAACCCATATAATTACAACATATAG-ACTCACCTGATATGCTTTAGTGACGTCTAAC
391 GTCTCCCTCAACCCATATAATTACAACATAT-GCACTCACCTGATATACTGTAGTGACGTCCAAC
* * * * *
46570 TACTCAACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAATCTACAT
455 TACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACAC
* * *
46634 AAGCACCCATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCA
519 AAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
* *
46699 ATACTCAAAAGTACTAATACTTTTAATTTATATAACAACTTCAACCTATCTTATAATTCCTGGAT
584 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
* * * * *
46764 CAGTAGTATCGGTACCCATACTACGGTATCGATACTTCTATACTACGATACTGATACGCCCTTTC
649 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTC
*
46829 AT
714 AG
*
46831 TATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCT-T-CTA--GTATCGAT
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA-C-TTCTATACTATGGTATCGAT
** * ** * *
46892 A---CCTTTC--T-TC--TAGTATTGATAC-TTCT---ATACTATGGTATCGATACTCCCTT-T-
64 ACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAAT-CCATGGTATCGATA--CCTTTCTC
* * * * * * *
46943 C-AGTATCGATAC--C-ATT-TA-GGCATTCTGGAAT-CC-AT-GGTATCGATACCATTCTCCTA
126 CTAGTACCGATACATCTATTCTATGGTA-TCAGTACTCCCTTTCAGTATCGATACCATT-T-C--
** * * * ** * * *
46999 GTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATA-TCATTTCTCCATCT
186 -T-CC-AT-C-TGGATTCCAAGGTATC-G-A-TACCTTTCTCT-TAG-TACTGATATCT---T-T
* * * ***
47063 GGATTCCAAGGTAT-CGATACCTTTCTCTTA-GTATTGATATCTTT-ATGCCAAATGCACAGTTA
237 --ATGCCAA---ATGC-ATA-------GTTAGGCATT--TATCTTTCATTTTAAA---ACAGTT-
** * *
47125 GGCCTTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACAC
283 ---C-TTA------A-ACTAAAA-A-TTATT---C--ATAA-TA-TCA-A-------TTCCACAC
*
47190 ACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTA
320 ATATTATAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTA
* * * *
47254 TTGTAAGTCTCCCTCAACTCATATAATTACAATATATGCACTCTCCTTATATACTGTAGTGACGT
385 TTGTAAGTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGATATACTGTAGTGACGT
* * *
47319 CCAACTACTCGACAACGTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATAT
450 CCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCT
* *
47384 ACACAAGCACCCATTTAGTACACAAACCATACAAATGTTAGCATATTATCTAACATTTATACTTT
515 ACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTT
47449 AGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCT
580 AGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCT
*
47514 GGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCAATACTACGATACCGATACTCCC
645 GGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCC
47579 TTTCAG
710 TTTCAG
* *
47585 TATCGATACCATTTCAGTATTATGGAATCCATAGTATCGATACTTCTATATTATGGTATCGATAC
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
47650 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
66 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
* *
47715 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATTTGAA
131 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
* *
47780 TTCCAAGGTATCGATACCTTTCTCTTAGTACAGATATGTTTATGCCAAATGCATAGTTAGGCATT
196 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
47845 TATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTA
261 TATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACATATTA
* * *
47909 TAAACATATATCATATTAA-GTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGA
326 TAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAA
* ** * *
47973 GTCTCCCTCAACCCATATAATTACAACATATAG-ACTCACCTGATATGCCCTAGAGACGTCTAAC
391 GTCTCCCTCAACCCATATAATTACAACATAT-GCACTCACCTGATATACTGTAGTGACGTCCAAC
* * * * *
48037 TACTCAACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAATCTACAT
455 TACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACAC
* * * *
48101 AAGCACTCATTTAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCA
519 AAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
48166 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
584 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
* *
48231 CAGTAGTATCGGTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTC
649 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTC
48296 AG
714 AG
*
48298 TATCGATACCATTTCGGTATTCTGGAATCCATAGTATCAATACCTTTCTTCTAGTATCGATACTT
1 TATCGATACCATTTCGGTATTATGGAAT-C-------C---A---------TAGTATCGATACTT
* * *
48363 CAATACTATGGCATCGATACTCCCTTTCAGTATCGATACCAA-TTAGGCATTCTGGAATACATGG
46 CTATACTATGGTATCGATACTCCCTTTCAGTATCGATA-CAATTTAGGCATTCTGGAATCCATGG
*
48427 TATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATC
110 TATCGATACCTTTCTCCTAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATC
*
48492 GATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATG
175 GATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATG
*
48557 CCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATA
240 CCAAATGCATAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATA
*
48622 ATATCAATTCCACACACATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAACA
305 ATATCAATTCCACACATATTATAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACA
* * * *
48686 TTTGAGCTGGAATTATTGTAAGTCTCTCTCAACCCATATAATTACAATATATGCACTCACCTAAT
370 TTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGAT
** *
48751 ATACTGTAGTGACGTCCAACTACTCGGCAACTTTGTCCTTTCCCTTTTTCTTACCTGACTAAGGA
435 ATACTGTAGTGACGTCCAACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGA
48816 GCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTA-TATATTATC
500 GCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATC
48880 TAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACC
565 TAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACC
*
48945 TATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATCCTATGATATCGATACTTCTATACTAC
630 TATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTAC
*
49010 GATACAGATACTCCCTTTCAG
695 GATACCGATACTCCCTTTCAG
*
49031 TATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCT-T-CTA--GTATCGAT
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATA-C-TTCTATACTATGGTATCGAT
** * ** * *
49092 A---CCTTTC--T-TC--TAGTATTGATAC-TTCT---ATACTATGGTATCGATACTCCCTT-T-
64 ACTCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAAT-CCATGGTATCGATA--CCTTTCTC
* * ** * * * *
49143 C-AGTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTACCGAT
126 CTAGTACCGATA-CATCTATTC--TATGGTAT-CA--GTA-C--T-CCCTT-T-C-AGTATCGAT
* ** * * * * * * *
49207 ACTTCTATTCTATGGTATCAGTACTCCCTATCA-GTATCGATACCATTTCTCAATCAGGATTCCA
178 AC--C-ATT-TCT-CCATCTGGA-TTCC-A--AGGTATCGATACC-TTTCTC--TTAGTACT-GA
* * * * * * * ***
49271 -AGGTATTGATACC--TTTC-T-CTTA-GTATTGATATCTTT-ATGCCAAATGCACAGTTACGCA
230 TA--TCTTTATGCCAAATGCATAGTTAGGCATT--TATCTTTCATTTTAAA---ACAGTT---C-
* * * * **
49329 TTTATCTTTCATTTTAAAA-TAGTTCTTAAACTAAAAATTATTCATAATATCAATTC-CACACAC
284 TTAAAC--T-A----AAAATTA-TTC----A-T---AA-TA-TC--AAT-TCCA--CACATA-TT
*
49392 ATTATAAACATATATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATT
325 ATA---AACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATT
* * *
49456 GTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTCACCTAATATACTATAGTGACGTCC
387 GTAAGTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGATATACTGTAGTGACGTCC
* *
49521 AACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATATAC
452 AACTACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTAC
49586 ACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAG
517 ACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAG
49651 TAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGG
582 TAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGG
*
49716 CTCAATAGTATCAGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTT
647 CTCAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTT
*
49781 TGAG
712 TCAG
49785 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
1 TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
* *
49850 TCCCTCTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTGTCGATACCTTTCTCCTAGT
66 TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
49915 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
131 ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
* **
49980 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTACGTTAAATGCATAGTTAGGCATT
196 TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
50045 TATCTTTCATTTTAAAACAGTTCTTAAACT-AAAATTATTCATAATATCAATTCCACACATATTA
261 TATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACATATTA
* *
50109 TAAACATATATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGA
326 TAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAA
* * * *
50173 GTCTTCCTCAACCCATATAATTACAACATATAG-ACTCACCTGATATGCTTTAGTGACGTCTAAC
391 GTCTCCCTCAACCCATATAATTACAACATAT-GCACTCACCTGATATACTGTAGTGACGTCCAAC
* * * * *
50237 TACTCAACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACT-CGATAGCTTGGTTATAATCTACAT
455 TACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACAC
* * *
50301 AAGCACCCATTTAGTTCCCACACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
519 AAGCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTA
50366 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
584 ATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCT
* * *
50431 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTATGGTATC-AGTACTCCCTTT
649 CAATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGA-TACTCCCTTT
50495 CAG
713 CAG
50498 TATCGATACCATTTC
1 TATCGATACCATTTC
50513 TCCATCTGGA
Statistics
Matches: 9545, Mismatches: 817, Indels: 1376
0.81 0.07 0.12
Matches are distributed among these distances:
691 6 0.00
692 26 0.00
693 4 0.00
694 14 0.00
695 15 0.00
696 9 0.00
697 3 0.00
698 2 0.00
699 37 0.00
700 58 0.01
701 41 0.00
702 34 0.00
703 37 0.00
704 25 0.00
705 25 0.00
706 13 0.00
707 2 0.00
708 20 0.00
709 13 0.00
710 72 0.01
711 341 0.04
712 28 0.00
713 1908 0.20
714 167 0.02
715 21 0.00
716 9 0.00
717 10 0.00
718 14 0.00
719 9 0.00
720 36 0.00
721 62 0.01
722 47 0.00
723 40 0.00
724 32 0.00
725 19 0.00
726 19 0.00
727 18 0.00
728 23 0.00
729 17 0.00
730 12 0.00
731 319 0.03
732 13 0.00
733 999 0.10
734 1123 0.12
735 15 0.00
736 15 0.00
737 13 0.00
738 12 0.00
739 27 0.00
740 8 0.00
741 4 0.00
742 20 0.00
743 40 0.00
744 37 0.00
745 40 0.00
746 404 0.04
747 169 0.02
748 7 0.00
749 17 0.00
750 17 0.00
751 18 0.00
752 26 0.00
753 249 0.03
754 1513 0.16
755 37 0.00
756 51 0.01
757 13 0.00
758 21 0.00
759 30 0.00
760 3 0.00
761 16 0.00
762 28 0.00
763 28 0.00
764 35 0.00
765 55 0.01
766 43 0.00
767 72 0.01
768 131 0.01
769 6 0.00
770 9 0.00
771 12 0.00
772 15 0.00
773 22 0.00
774 9 0.00
775 26 0.00
776 366 0.04
778 1 0.00
779 7 0.00
781 3 0.00
782 10 0.00
783 8 0.00
784 8 0.00
785 9 0.00
786 13 0.00
787 15 0.00
788 14 0.00
789 2 0.00
790 2 0.00
791 3 0.00
792 7 0.00
793 6 0.00
794 2 0.00
795 14 0.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (715 bp):
TATCGATACCATTTCGGTATTATGGAATCCATAGTATCGATACTTCTATACTATGGTATCGATAC
TCCCTTTCAGTATCGATACAATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGT
ACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGA
TTCCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTATGCCAAATGCATAGTTAGGCATT
TATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACATATTA
TAAACATATATCATATTAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAA
GTCTCCCTCAACCCATATAATTACAACATATGCACTCACCTGATATACTGTAGTGACGTCCAACT
ACTCAACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAA
GCACCCATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAAT
ACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCA
ATAGTATCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAG
Found at i:41720 original size:20 final size:20
Alignment explanation
Indices: 41695--41746 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
41685 CTGGAATCCA
41695 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
41715 TAGTATCGATATCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
41735 TAGTATTGATAC
1 TAGTATCGATAC
41747 TTCTATACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:41816 original size:95 final size:94
Alignment explanation
Indices: 41717--41934 Score: 287
Period size: 95 Copynumber: 2.3 Consensus size: 94
41707 CTTTCTTCTA
*
41717 GTATCGATATCTTTCTTCTAGTATTGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATATCTTTCTTCTAGTATTGATACTTCAATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
41781 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * * *
41812 GTATCGATATCATTCTCCTAGTACTGATACTTCAATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATATCTTTCTTCTAGTATTGATACTTCAATACTATGGTATCAGTACTCCCTTTCAGTAT
* ** *
41877 CGATATCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
*
41906 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATATCTTTCTTC-TAGTATTGATA
41935 TCTTTATGCC
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.32
95 70 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (94 bp):
GTATCGATATCTTTCTTCTAGTATTGATACTTCAATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:41851 original size:115 final size:115
Alignment explanation
Indices: 41622--41834 Score: 320
Period size: 115 Copynumber: 1.9 Consensus size: 115
41612 CCATACTATG
* * *
41622 GTATCGATACTTCTATACTACGATACTGATACTCCCTTTCATTATCGATACCATTTCGGTATTCT
1 GTATCGATACTTCTATACTACGATACTGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCT
* *
41687 GGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATATCTTTCTTCTA
66 GGAATCCATAGTATCGATACCATTCTCCTAGTATCGATATCTTTCTTCTA
* * *
41737 GTATTGATACTTCTATACTATGGTA-TCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTC
1 GTATCGATACTTCTATACTACGATACT-GATACTCCCTTTCAGTATCGATACCATTTAGGCATTC
* *
41801 TGGAATCCATGGTATCGATATCATTCTCCTAGTA
65 TGGAATCCATAGTATCGATACCATTCTCCTAGTA
41835 CTGATACTTC
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
114 1 0.01
115 86 0.99
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (115 bp):
GTATCGATACTTCTATACTACGATACTGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCT
GGAATCCATAGTATCGATACCATTCTCCTAGTATCGATATCTTTCTTCTA
Found at i:42548 original size:95 final size:94
Alignment explanation
Indices: 42449--42648 Score: 260
Period size: 95 Copynumber: 2.1 Consensus size: 94
42439 ATGGAATCCA
* * *
42449 TAGTATCGATACTTCTATAT-TATGGTATC-GATACTCCCTTTCAGTATCGATACAATTTAGGCA
1 TAGTACCGATACATCTAT-TCTATGGTATCAG-TACTCCCTTTCAGTATCGATACAATTTAGCCA
*
42512 TTCTGGAATCCATGGTACCGATACCTTTCTCC
64 -TCTGGAATCCAAGGTACCGATACCTTTCTCC
* **
42544 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
* * *
42609 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTACCGATACCTTTCTCC
*
42638 TAGTACTGATA
1 TAGTACCGATA
42649 TCTTTATGCC
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
94 38 0.41
95 53 0.58
96 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (94 bp):
TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
TGGAATCCAAGGTACCGATACCTTTCTCC
Found at i:43231 original size:95 final size:95
Alignment explanation
Indices: 43090--43381 Score: 401
Period size: 95 Copynumber: 3.1 Consensus size: 95
43080 CATACTATGA
* * * * *
43090 TATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
43155 GAATCCAAAGTATCGATACCTTTCTTCTAG
66 GAATCCAAGGTATCGATACCTTTCTTCTAG
* *
43185 TATCGATACTTCAATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* *
43250 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCAAGGTATCGATACCTTTCTTCTAG
* * **
43280 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTCTCCA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
*
43343 GGATTCCAAGGTATCGATACCTTTC-TCTTAG
65 GGAATCCAAGGTATCGATACCTTTCTTC-TAG
*
43374 TATTGATA
1 TATCGATA
43382 TCTTTATGCC
Statistics
Matches: 174, Mismatches: 21, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
93 1 0.01
94 36 0.21
95 137 0.79
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
GAATCCAAGGTATCGATACCTTTCTTCTAG
Found at i:43841 original size:22 final size:22
Alignment explanation
Indices: 43815--43857 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
43805 ATCGGTACCC
* *
43815 ATACTATGATATCGATACTTCA
1 ATACTACGATACCGATACTTCA
43837 ATACTACGATACCGATACTTC
1 ATACTACGATACCGATACTTC
43858 CGTTCAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (22 bp):
ATACTACGATACCGATACTTCA
Found at i:43947 original size:75 final size:75
Alignment explanation
Indices: 43824--43982 Score: 210
Period size: 75 Copynumber: 2.1 Consensus size: 75
43814 CATACTATGA
* * * * *
43824 TATCGATACTTCAATACTACGATACCGATACTTCCGTTCAGTATCGATACCATTTTGGTATTATG
1 TATCGATACTTCAATACTACGATACCGATACTCCCGTTCACTATCGATACAATTTAGGCATTATG
43889 GAATCCATAG
66 GAATCCATAG
* * * * * *
43899 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCACTATCGATACAATTTAGGCATTCTG
1 TATCGATACTTCAATACTACGATACCGATACTCCCGTTCACTATCGATACAATTTAGGCATTATG
*
43964 GAATCCATGG
66 GAATCCATAG
43974 TATCGATAC
1 TATCGATAC
43983 CTTTCTCCTA
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (75 bp):
TATCGATACTTCAATACTACGATACCGATACTCCCGTTCACTATCGATACAATTTAGGCATTATG
GAATCCATAG
Found at i:44015 original size:95 final size:95
Alignment explanation
Indices: 43896--44085 Score: 249
Period size: 95 Copynumber: 2.0 Consensus size: 95
43886 ATGGAATCCA
* * *
43896 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCACTATCGATACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCACTATCGATACAATTTAGCCA-
*
43960 TCTGGAATCCATGGTATCGATACC-TTTCTCC
64 TCTGGAATCCAAGGTATCGATACCATTTCTCC
** * * **
43991 TAGTACCGATACATCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCACTATCGATACAATTTAGCCATC
*
44056 TGGATTCCAAGGTATCGATACCATTTCTCC
66 TGGAATCCAAGGTATCGATACCATTTCTCC
44086 ATCTGGATTC
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
94 22 0.27
95 59 0.72
96 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCACTATCGATACAATTTAGCCATC
TGGAATCCAAGGTATCGATACCATTTCTCC
Found at i:44076 original size:33 final size:33
Alignment explanation
Indices: 44034--44116 Score: 159
Period size: 33 Copynumber: 2.5 Consensus size: 33
44024 CTCCCTTTCA
44034 GTATCGATACCATTTCTCCATCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATCTGGATTCCAAG
44067 GTATCGATACCATTTCTCCATCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATCTGGATTCCAAG
44100 GTATCGATACC-TTTCTC
1 GTATCGATACCATTTCTC
44117 TTAGTACTGA
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 6 0.12
33 44 0.88
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (33 bp):
GTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:44574 original size:20 final size:21
Alignment explanation
Indices: 44549--44625 Score: 77
Period size: 22 Copynumber: 3.6 Consensus size: 21
44539 TGGATCAGTA
*
44549 GTATCGGTAC-CCATACTACG
1 GTATCGATACTCCATACTACG
*
44569 GTATCGATACTTCTATACTACG
1 GTATCGATAC-TCCATACTACG
*
44591 GTATCGATACTTCAATACTACG
1 GTATCGATAC-TCCATACTACG
*
44613 ATA-CTGATACTCC
1 GTATC-GATACTCC
44626 CTTTCATAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.18
21 3 0.06
22 37 0.76
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (21 bp):
GTATCGATACTCCATACTACG
Found at i:44623 original size:22 final size:22
Alignment explanation
Indices: 44561--44612 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
44551 ATCGGTACCC
*
44561 ATACTACGGTATCGATACTTCT
1 ATACTACGGTATCGATACTTCA
44583 ATACTACGGTATCGATACTTCA
1 ATACTACGGTATCGATACTTCA
44605 ATACTACG
1 ATACTACG
44613 ATACTGATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (22 bp):
ATACTACGGTATCGATACTTCA
Found at i:44689 original size:20 final size:20
Alignment explanation
Indices: 44664--44715 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
44654 CTGGAATCCA
44664 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
44684 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
44704 TAGTATTGATAC
1 TAGTATCGATAC
44716 TTCTATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:44785 original size:95 final size:94
Alignment explanation
Indices: 44686--44903 Score: 296
Period size: 95 Copynumber: 2.3 Consensus size: 94
44676 CTTTCTTCTA
44686 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
44750 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** *
44781 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAT
* ** *
44846 CGATATCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
44875 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
44904 TCTTTATGCC
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.32
95 70 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:44820 original size:115 final size:116
Alignment explanation
Indices: 44573--44820 Score: 324
Period size: 115 Copynumber: 2.1 Consensus size: 116
44563 ACTACGGTAT
*
44573 CGATACTTCTATACTACGGTATCGATACTTCAATACTACGATACTGATACTCCCTTTCATAATCG
1 CGATACTTCTATTCTAC-GTATCGATACTTCAATACTACGATACTGATACTCCCTTTCATAATCG
* * * * *
44638 ATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTAT
65 ATACCATTTAGGCATTCTGGAATCCATAGTATCGATACCATTCTCCTAGTAC
* * * * *
44690 CGATACCTT-TCTTCTA-GTATTGATACTTCTATACTATGGTA-TCGATACTCCCTTTCAGT-AT
1 CGATA-CTTCTATTCTACGTATCGATACTTCAATACTACGATACT-GATACTCCCTTTCA-TAAT
*
44751 CGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCATTCTCCTAGTAC
63 CGATACCATTTAGGCATTCTGGAATCCATAGTATCGATACCATTCTCCTAGTAC
44805 CGATACTTCTATTCTA
1 CGATACTTCTATTCTA
44821 TGGTATCAGT
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
114 4 0.04
115 96 0.84
116 1 0.01
117 10 0.09
118 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (116 bp):
CGATACTTCTATTCTACGTATCGATACTTCAATACTACGATACTGATACTCCCTTTCATAATCGA
TACCATTTAGGCATTCTGGAATCCATAGTATCGATACCATTCTCCTAGTAC
Found at i:45486 original size:95 final size:95
Alignment explanation
Indices: 45346--45637 Score: 394
Period size: 95 Copynumber: 3.1 Consensus size: 95
45336 CATACTATGA
* * * * *
45346 TATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
45411 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* *
45441 TATCGATACTTCAATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* *
45506 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * **
45536 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTCTCCA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
*
45599 GGATTCCA-AGGTATCGATACCTTTC-TCTTAG
65 GGAATCCATA-GTATCGATACCTTTCTTC-TAG
*
45630 TATTGATA
1 TATCGATA
45638 TCTTTATGCC
Statistics
Matches: 174, Mismatches: 20, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
93 1 0.01
94 35 0.20
95 138 0.79
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
GAATCCATAGTATCGATACCTTTCTTCTAG
Found at i:46094 original size:22 final size:22
Alignment explanation
Indices: 46068--46110 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
46058 ATCGGTACCC
* *
46068 ATACTATGATATCGATACTTCA
1 ATACTACGATACCGATACTTCA
46090 ATACTACGATACCGATACTTC
1 ATACTACGATACCGATACTTC
46111 CTTTCAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (22 bp):
ATACTACGATACCGATACTTCA
Found at i:46200 original size:75 final size:75
Alignment explanation
Indices: 46077--46235 Score: 228
Period size: 75 Copynumber: 2.1 Consensus size: 75
46067 CATACTATGA
* * * *
46077 TATCGATACTTCAATACTACGATACCGATACTTCCTTTCAGTATCGATACCATTTTGGTATTATG
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
46142 GAATCCATAG
66 GAATCCATAG
* * * * *
46152 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTCTG
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
*
46217 GAATCCATGG
66 GAATCCATAG
46227 TATCGATAC
1 TATCGATAC
46236 CTTTCTCCTA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.36
Consensus pattern (75 bp):
TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
GAATCCATAG
Found at i:46268 original size:95 final size:94
Alignment explanation
Indices: 46149--46348 Score: 267
Period size: 95 Copynumber: 2.1 Consensus size: 94
46139 ATGGAATCCA
* * *
46149 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCGATACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTTTCAGTATCGATACAATTTAGCCA-
*
46213 TCTGGAATCCATGGTATCGATACCTTTCTCC
64 TCTGGAATCCAAGGTATCGATACCTTTCTCC
** * **
46244 TAGTACCGATACATCTATTTTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
* *
46309 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTATCGATACCTTTCTCC
*
46338 TAGTACTGATA
1 TAGTACCGATA
46349 TCTTTATGCC
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
94 38 0.41
95 53 0.58
96 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATC
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:46887 original size:20 final size:20
Alignment explanation
Indices: 46862--46913 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
46852 CTGGAATCCA
46862 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
46882 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
46902 TAGTATTGATAC
1 TAGTATCGATAC
46914 TTCTATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:46969 original size:115 final size:115
Alignment explanation
Indices: 46789--47008 Score: 325
Period size: 115 Copynumber: 1.9 Consensus size: 115
46779 CCATACTACG
* * *
46789 GTATCGATACTTCTATACTACGATACTGATACGCCCTTTCATTATCGATACCATTTCGGTATTCT
1 GTATCGATACTTCTATACTACGATACTGATACGCCCTTTCAGTATCGATACCATTTAGGCATTCT
* * *
46854 GGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTA
66 GGAATCCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTA
* * * *
46904 GTATTGATACTTCTATACTATGGTA-TCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTC
1 GTATCGATACTTCTATACTACGATACT-GATACGCCCTTTCAGTATCGATACCATTTAGGCATTC
*
46968 TGGAATCCATGGTATCGATACCATTCTCCTAGTACCGATAC
65 TGGAATCCATAGTATCGATACCATTCTCCTAGTACCGATAC
47009 TTCTATTCTA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
114 1 0.01
115 92 0.99
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (115 bp):
GTATCGATACTTCTATACTACGATACTGATACGCCCTTTCAGTATCGATACCATTTAGGCATTCT
GGAATCCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTA
Found at i:46983 original size:95 final size:94
Alignment explanation
Indices: 46884--47101 Score: 296
Period size: 95 Copynumber: 2.3 Consensus size: 94
46874 CTTTCTTCTA
46884 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAG-TACTCCCTTTCAGTA
* *
46948 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTTAGCCA-TCTGGAATCCAAG
* * ** *
46979 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAT
* ** *
47044 CGATATCATTTCTCCATCTGGATTCCAAG
66 CGATACCATTTAGCCATCTGGAATCCAAG
47073 GTATCGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
47102 TCTTTATGCC
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.32
95 70 0.66
96 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTAT
CGATACCATTTAGCCATCTGGAATCCAAG
Found at i:47629 original size:75 final size:75
Alignment explanation
Indices: 47544--47702 Score: 221
Period size: 75 Copynumber: 2.1 Consensus size: 75
47534 CATACTATGA
* *
47544 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCA-GTATTAT
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTT-AGGCATTAT
47608 GGAATCCATAG
65 GGAATCCATAG
* * * * * *
47619 TATCGATACTTCTATATTATGGTATCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTCTG
1 TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
*
47684 GAATCCATGG
66 GAATCCATAG
47694 TATCGATAC
1 TATCGATAC
47703 CTTTCTCCTA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
74 1 0.01
75 73 0.99
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (75 bp):
TATCGATACTTCAATACTACGATACCGATACTCCCTTTCAGTATCGATACAATTTAGGCATTATG
GAATCCATAG
Found at i:47715 original size:95 final size:94
Alignment explanation
Indices: 47616--47815 Score: 262
Period size: 95 Copynumber: 2.1 Consensus size: 94
47606 ATGGAATCCA
* * *
47616 TAGTATCGATACTTCTATAT-TATGGTATC-GATACTCCCTTTCAGTATCGATACAATTTAGGCA
1 TAGTACCGATACATCTAT-TCTATGGTATCAG-TACTCCCTTTCAGTATCGATACAATTTAGCCA
*
47679 TTCTGGAA-TCCATGGTATCGATACCTTTCTCC
64 TT-T-GAATTCCAAGGTATCGATACCTTTCTCC
* **
47711 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATT
1 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATT
*
47776 TGAATTCCAAGGTATCGATACCTTTCTCT
66 TGAATTCCAAGGTATCGATACCTTTCTCC
*
47805 TAGTACAGATA
1 TAGTACCGATA
47816 TGTTTATGCC
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
93 3 0.03
94 34 0.37
95 55 0.59
96 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (94 bp):
TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACAATTTAGCCATT
TGAATTCCAAGGTATCGATACCTTTCTCC
Found at i:48397 original size:95 final size:95
Alignment explanation
Indices: 48282--48542 Score: 330
Period size: 95 Copynumber: 2.8 Consensus size: 95
48272 ACTACGATAC
* *
48282 CGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCAATACCTTTCT
1 CGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGGAATACATAGTATCAATACCTTTCT
* *
48347 TCTAGTATCGATACTTCAATACTATGGCAT
66 CCTAGTACCGATACTTCAATACTATGGCAT
* * * *
48377 CGATACTCCCTTTCAGTATCGATACCAATTAGGCATTCTGGAATACATGGTATCGATACCTTTCT
1 CGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGGAATACATAGTATCAATACCTTTCT
* * *
48442 CCTAGTACCGATACTTCTATTCTATGGTAT
66 CCTAGTACCGATACTTCAATACTATGGCAT
** * * *
48472 C-AGTACTCCCTTTCAGTATCGATACCATTTCTCCA-TCTGGATTCCA-AGGTATCGATACCTTT
1 CGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGGAATACATA-GTATCAATACCTTT
*
48534 CTCTTAGTA
64 CTCCTAGTA
48543 TTGATATCTT
Statistics
Matches: 145, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
94 32 0.22
95 113 0.78
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (95 bp):
CGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGGAATACATAGTATCAATACCTTTCT
CCTAGTACCGATACTTCAATACTATGGCAT
Found at i:49087 original size:20 final size:20
Alignment explanation
Indices: 49062--49113 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
49052 CTGGAATCCA
49062 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
49082 TAGTATCGATACCTTTCTTC
1 TAGTATCGATACCTTTCTTC
*
49102 TAGTATTGATAC
1 TAGTATCGATAC
49114 TTCTATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (20 bp):
TAGTATCGATACCTTTCTTC
Found at i:49169 original size:115 final size:115
Alignment explanation
Indices: 48994--49208 Score: 342
Period size: 115 Copynumber: 1.9 Consensus size: 115
48984 CTATGATATC
* *
48994 GATACTTCTATACTACGATACAGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAAT
1 GATACTTCTATACTACGATACAGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
* * *
49059 CCATAGTATCGATACCTTTCTTCTAGTATCGATACCTTTCTTCTAGTATT
66 CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
* *
49109 GATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAA
1 GATACTTCTATACTACGATA-CAGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAA
*
49173 TCCATGGTATCGATACCATTCTCCTAGTACCGATAC
65 TCCATAGTATCGATACCATTCTCCTAGTACCGATAC
49209 TTCTATTCTA
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
115 90 0.99
116 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (115 bp):
GATACTTCTATACTACGATACAGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGGAAT
CCATAGTATCGATACCATTCTCCTAGTACCGATACCTTTCTTCTAGTATT
Found at i:49183 original size:95 final size:94
Alignment explanation
Indices: 49084--49301 Score: 278
Period size: 95 Copynumber: 2.3 Consensus size: 94
49074 CTTTCTTCTA
*
49084 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATC-GATACTCCCTTTCAGTA
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAG-TACTCCCTATCAGTA
* * * *
49148 TCGATACCATTTAGGCATTCTGGAATCCATG
65 TCGATACCATTT-CGCAATCAGGAATCCAAG
* * ** *
49179 GTATCGATACCATTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTATCAGTAT
1 GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTATCAGTAT
* *
49244 CGATACCATTTCTCAATCAGGATTCCAAG
66 CGATACCATTTCGCAATCAGGAATCCAAG
*
49273 GTATTGATACCTTTC-TCTTAGTATTGATA
1 GTATCGATACCTTTCTTC-TAGTATTGATA
49302 TCTTTATGCC
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 34 0.33
95 68 0.65
96 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (94 bp):
GTATCGATACCTTTCTTCTAGTATTGATACTTCTATACTATGGTATCAGTACTCCCTATCAGTAT
CGATACCATTTCGCAATCAGGAATCCAAG
Found at i:49833 original size:75 final size:75
Alignment explanation
Indices: 49744--49902 Score: 219
Period size: 75 Copynumber: 2.1 Consensus size: 75
49734 CATACTATGA
* * * * *
49744 TATCGATACTTCTATACTACGATACCGATACTCCCTTTGAGTATCGATACCATTTCGGTATTATG
1 TATCGATACTTCTATACTACGATACCGATACTCCCTCTCAGTATCGATACAATTTAGGCATTATG
49809 GAATCCATAG
66 GAATCCATAG
* * * *
49819 TATCGATACTTCTATACTATGGTATCGATACTCCCTCTCAGTATCGATACAATTTAGGCATTCTG
1 TATCGATACTTCTATACTACGATACCGATACTCCCTCTCAGTATCGATACAATTTAGGCATTATG
*
49884 GAATCCATGG
66 GAATCCATAG
*
49894 TGTCGATAC
1 TATCGATAC
49903 CTTTCTCCTA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (75 bp):
TATCGATACTTCTATACTACGATACCGATACTCCCTCTCAGTATCGATACAATTTAGGCATTATG
GAATCCATAG
Found at i:49934 original size:95 final size:94
Alignment explanation
Indices: 49816--50015 Score: 258
Period size: 95 Copynumber: 2.1 Consensus size: 94
49806 ATGGAATCCA
* * *
49816 TAGTATCGATACTTCTATACTATGGTATC-GATACTCCCTCTCAGTATCGATACAATTTAGGCAT
1 TAGTACCGATACATCTATACTATGGTATCAG-TACTCCCTCTCAGTATCGATACAATTTAGCCA-
* *
49880 TCTGGAATCCATGGTGTCGATACCTTTCTCC
64 TCTGGAATCCAAGGTATCGATACCTTTCTCC
* * * **
49911 TAGTACCGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATC
1 TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTCTCAGTATCGATACAATTTAGCCATC
* *
49976 TGGATTCCAAGGTATCGATACCTTTCTCT
66 TGGAATCCAAGGTATCGATACCTTTCTCC
*
50005 TAGTACTGATA
1 TAGTACCGATA
50016 TCTTTACGTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
94 37 0.41
95 53 0.58
96 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.36
Consensus pattern (94 bp):
TAGTACCGATACATCTATACTATGGTATCAGTACTCCCTCTCAGTATCGATACAATTTAGCCATC
TGGAATCCAAGGTATCGATACCTTTCTCC
Found at i:50949 original size:536 final size:538
Alignment explanation
Indices: 49917--51048 Score: 1819
Period size: 536 Copynumber: 2.1 Consensus size: 538
49907 CTCCTAGTAC
* *
49917 CGATACATCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATT
1 CGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATT
** *
49982 CCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTACGTTAAATGCATAGTTAGGCATTTA
66 CCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTACGCCAAATGCACAGTTAGGCATTTA
*
50047 TCTTTCATTTTAAAACAGTTCTTAAACTAAAATTATTCATAATATCAATTCCACACATATTATAA
131 TCTTTCATTTTAAAACAGTTCTTAAACTAAAATTATTCATAATATCAATTCCACACACATTATAA
* * *
50112 ACATATATCATATTAAGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCT
196 ACATATATCATATTAAGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTATAAG--T
* * * *
50177 TCCTCAACCCATATAATTACAACATATAGACTCACCTGATATGCTTTAGTGACGTCTAACTACTC
259 TCCT--A-CCATATAATTACAACATATAGACTCACCTAATATACTGTAGTGACGTCCAACTACTC
* * * * *
50242 AACAACTTTGTCCTTGCCTTTTTTCTTGCCTGACTCGATAGCTTGGTTATAATCTACATAAGCAC
321 AACAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAGAGAGCTTGGTTATAATCTACACAAGCAC
* *
50307 CCATTTAGTTCCCACACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTC
386 CCATTTAGTACACACACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTC
*
50372 AAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAG
451 AAAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCATGGCTCAATAG
50437 TATCGGTACCCATACTATGATAT
516 TATCGGTACCCATACTATGATAT
50460 CGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATT
1 CGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATT
* * *
50525 CCAAGGTATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTGGGCATTTA
66 CCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTACGCCAAATGCACAGTTAGGCATTTA
50590 TCTTTCATTTTAAAACAGTTCTTAAACTAAAAGTTATTCATAATATCAATTCCACACACATTATA
131 TCTTTCATTTTAAAACAGTTCTTAAACTAAAA-TTATTCATAATATCAATTCCACACACATTATA
50655 AACATATATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTATAAG-
195 AACATATATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTATAAGT
* **
50718 T-CT-CCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGG
259 TCCTACCATATAATTACAACATATAG-ACTCACCTAATATACTGTAGTGACGTCCAACTACTCAA
*
50780 CAACTTTGTCCTTTCCCTTTTTCTTACCTGACTA-AGGAGCTTGGTTATAATCTACACAAGCACC
323 CAACTTTGTCCTTGCCCTTTTTCTTACCTGACTAGA-GAGCTTGGTTATAATCTACACAAGCACC
*
50844 CATTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCA
387 CATTTAGTACACACACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCA
*
50909 AAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTTATGGCTCAATAGT
452 AAAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCATGGCTCAATAGT
*
50974 ATTGGTACCCATACTATGATAT
517 ATCGGTACCCATACTATGATAT
* * *
50996 CGATACTTCTATACTACGATA-CCGATACTCCCTTTCAGTATCGATACCATTTC
1 CGATACTTCTATACTATGGTATCAG-TACTCCCTTTCAGTATCGATACCATTTC
51049 GGTATAGTAT
Statistics
Matches: 550, Mismatches: 34, Indels: 17
0.92 0.06 0.03
Matches are distributed among these distances:
535 4 0.01
536 299 0.54
540 2 0.00
541 1 0.00
543 157 0.29
544 87 0.16
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (538 bp):
CGATACTTCTATACTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATT
CCAAGGTATCGATACCTTTCTCTTAGTACTGATATCTTTACGCCAAATGCACAGTTAGGCATTTA
TCTTTCATTTTAAAACAGTTCTTAAACTAAAATTATTCATAATATCAATTCCACACACATTATAA
ACATATATCATATTAAGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTATAAGTTC
CTACCATATAATTACAACATATAGACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAA
CTTTGTCCTTGCCCTTTTTCTTACCTGACTAGAGAGCTTGGTTATAATCTACACAAGCACCCATT
TAGTACACACACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAG
TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCATGGCTCAATAGTATCG
GTACCCATACTATGATAT
Found at i:51078 original size:20 final size:22
Alignment explanation
Indices: 51032--51084 Score: 74
Period size: 20 Copynumber: 2.5 Consensus size: 22
51022 ACTCCCTTTC
51032 AGTATCGATACCATTTCGGTAT
1 AGTATCGATACCATTTCGGTAT
* *
51054 AGTATCGATACC-TTTC-TTCT
1 AGTATCGATACCATTTCGGTAT
51074 AGTATCGATAC
1 AGTATCGATAC
51085 TTCTATACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 13 0.45
21 4 0.14
22 12 0.41
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (22 bp):
AGTATCGATACCATTTCGGTAT
Found at i:51254 original size:33 final size:34
Alignment explanation
Indices: 51217--51295 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 34
51207 TTCAGTATGG
*
51217 ATACCATTTCTCCA-TCTGGATTCCAAGGTATCA
1 ATACCATTTCTCCATTCTGGAATCCAAGGTATCA
*** * *
51250 ATACCATTTAGGCATTCTGGAATCCATGGTATCG
1 ATACCATTTCTCCATTCTGGAATCCAAGGTATCA
51284 ATACC-TTTCTCC
1 ATACCATTTCTCC
51296 TAGTACCGAT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
33 15 0.42
34 21 0.58
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (34 bp):
ATACCATTTCTCCATTCTGGAATCCAAGGTATCA
Found at i:51279 original size:128 final size:128
Alignment explanation
Indices: 51116--51376 Score: 434
Period size: 128 Copynumber: 2.0 Consensus size: 128
51106 CTCCCTTTCA
* *
51116 GTATCGATACCATTTAGGCATTTTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCAATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
** * *
51181 TCTATTCTATGGTATCA-GTACTCTGTTTCAGTATGGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
* *
51244 GTATCAATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCAATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
51309 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
51372 GTATC
1 GTATC
51377 GATATATTTC
Statistics
Matches: 124, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
127 1 0.01
128 123 0.99
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (128 bp):
GTATCAATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
Found at i:51983 original size:95 final size:95
Alignment explanation
Indices: 51843--52134 Score: 374
Period size: 95 Copynumber: 3.1 Consensus size: 95
51833 CATACTATGA
* * * * *
51843 TATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
51908 GAATCCATAGTATCAATACCTTTCTTCTAG
66 GAATCCATAGTATCAATACCTTTCTCCTAG
* *
51938 TATCGATACTTCGATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* *
52003 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCAATACCTTTCTCCTAG
* * * **
52033 TACCGATACATCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTCTCCA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
* * *
52096 GGATTCCA-AGGTATCGATACCTTTCTCTTAG
65 GGAATCCATA-GTATCAATACCTTTCTCCTAG
*
52127 TATTGATA
1 TATCGATA
52135 TCTTTATGCC
Statistics
Matches: 173, Mismatches: 22, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
94 37 0.21
95 136 0.79
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
GAATCCATAGTATCAATACCTTTCTCCTAG
Found at i:52663 original size:734 final size:734
Alignment explanation
Indices: 51244--52850 Score: 2770
Period size: 734 Copynumber: 2.2 Consensus size: 734
51234 GGATTCCAAG
*
51244 GTATCAATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
51309 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAGG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAGG
**
51373 TATCGATATATTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
51438 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
** *
51503 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGACGTGGTCTTATTGTGAGTCTCCCTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGACGTGGAATTATTGTAAGTCTCCCTC
* * * * * *
51568 AACCCATATAATTACAACATATATATTCACCTGATATGCTCTAGAGACGTCTAACTACTCAACAA
325 AACCCATATAATCACAACATATACACTCACCTAATATACTCTAGAGACGTCCAACTACTCAACAA
* * * * * *
51633 CTTTGTCCTTGCCTTTTTTCTTGCCTGACTCGATAGCTTGGTTATAATCTACATAAGCACCCATT
390 CTTTGTCATTGCCCTTTTTCTTACCTGACTAGAGAGCTTGGTTATAATCTACATAACCACCCATT
* *
51698 TAGTTCCCATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATGCTCAAAAG
455 TAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAAAAG
*
51763 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAGTAGTATCG
520 TACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCG
51828 GTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
585 GTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATAC
* *
51893 CATTTCGGTATTCTGGAATCCATAGTATCAATACCTTTCTTCTAGTATCGATACTTCGATACTAT
650 AATTTCAGTATTCTGGAATCCATAGTATCAATACCTTTCTTCTAGTATCGATACTTCGATACTAT
51958 GGTATCGATACTCCCTTTCA
715 GGTATCGATACTCCCTTTCA
*
51978 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
52043 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAGGT
52108 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
52173 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
52238 ATCATATAAGGTAAAACATACATTAATTTAAGCATTTGA-GCTGGAATTATTGTAAGTCTCTCTC
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGACG-TGGAATTATTGTAAGTCTCCCTC
* * * * * **
52302 AACCTATATAATCACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGGCAA
325 AACCCATATAATCACAACATATACACTCACCTAATATACTCTAGAGACGTCCAACTACTCAACAA
*
52367 CTTTGTCATTTCCCTTTTTCTTACCTGACTA-AGGAGCTTGGTTATAATCTACATAACCACCCAT
390 CTTTGTCATTGCCCTTTTTCTTACCTGACTAGA-GAGCTTGGTTATAATCTACATAACCACCCAT
*
52431 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
454 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAAAA
52496 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
519 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
* * *
52561 GGTACCCATACTATGATATCGATACTTCTATACTATGATACCGATATTCCCTTTCAGTATCGATA
584 GGTACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
* *
52626 CAATTTCAGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTA
649 CAATTTCAGTATTCTGGAATCCATAGTATCAATACCTTTCTTCTAGTATCGATACTTCGATACTA
52691 TGGTATCGATACTCCCTTTCA
714 TGGTATCGATACTCCCTTTCA
* * *
52712 GTATCGATACCATTTATGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
52777 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAGGT
52842 ATCGATACC
131 ATCGATACC
52851 ATTTAGGCAT
Statistics
Matches: 824, Mismatches: 46, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
733 2 0.00
734 821 1.00
735 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (734 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGACGTGGAATTATTGTAAGTCTCCCTCA
ACCCATATAATCACAACATATACACTCACCTAATATACTCTAGAGACGTCCAACTACTCAACAAC
TTTGTCATTGCCCTTTTTCTTACCTGACTAGAGAGCTTGGTTATAATCTACATAACCACCCATTT
AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGCAATACTCAAAAGT
ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
TACCCATACTATGATATCGAAACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACA
ATTTCAGTATTCTGGAATCCATAGTATCAATACCTTTCTTCTAGTATCGATACTTCGATACTATG
GTATCGATACTCCCTTTCA
Found at i:52716 original size:95 final size:96
Alignment explanation
Indices: 52577--52822 Score: 372
Period size: 95 Copynumber: 2.6 Consensus size: 96
52567 CATACTATGA
* * * * * *
52577 TATCGATACTTCTATACTATGATACCGATATTCCCTTTCAGTATCGATACAATTTCA-GTATTCT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCATGAATTAT
*
52641 GGAATCCATAGTATCGATACCTTTCTTCTAG
66 GGAATCCATAGTATCGATACCTTTCTCCTAG
52672 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTT-ATGAATTAT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCATGAATTAT
*
52736 GGAATCCATGGTATCGATACCTTTCTCCTAG
66 GGAATCCATAGTATCGATACCTTTCTCCTAG
* *
52767 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
52823 TCCATATGGA
Statistics
Matches: 138, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
94 2 0.01
95 136 0.99
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (96 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCATGAATTAT
GGAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:52849 original size:33 final size:34
Alignment explanation
Indices: 52807--52891 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 34
52797 CTCCCTTTCA
*
52807 GTATCGATACCATTTCTCCA-TATGGATTCCAAG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
*** * *
52840 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
52874 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
52892 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTATGGAATCCAAG
Found at i:52882 original size:34 final size:33
Alignment explanation
Indices: 52807--52884 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
52797 CTCCCTTTCA
** *
52807 GTATCGATACCATTTCTCCATATGGATTCCAAG
1 GTATCGATACCATTTAGCCATATGGAATCCAAG
* * *
52840 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTAGCCA-TATGGAATCCAAG
52874 GTATCGATACC
1 GTATCGATACC
52885 TTTCTCCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
33 17 0.45
34 21 0.55
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (33 bp):
GTATCGATACCATTTAGCCATATGGAATCCAAG
Found at i:52940 original size:128 final size:128
Alignment explanation
Indices: 52712--52981 Score: 479
Period size: 128 Copynumber: 2.1 Consensus size: 128
52702 CTCCCTTTCA
*
52712 GTATCGATACCATTTATGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
52777 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
* *
52840 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
52905 TCTATTCTATGGTATCAGTACTCCCTTTTAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
*
52968 GTATCAATA-CATTT
1 GTATCGATACCATTT
52982 CTCTTAGTAT
Statistics
Matches: 136, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
127 5 0.04
128 131 0.96
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (128 bp):
GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
Found at i:53578 original size:95 final size:96
Alignment explanation
Indices: 53439--53684 Score: 372
Period size: 95 Copynumber: 2.6 Consensus size: 96
53429 CATACTATGA
* * * * * *
53439 TATCGATACTTCTATACTATGATACCGATATTCCCTTTCAGTATCGATACAATTTCA-GTATTCT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCATGAATTAT
*
53503 GGAATCCATAGTATCGATACCTTTCTTCTAG
66 GGAATCCATAGTATCGATACCTTTCTCCTAG
53534 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTT-ATGAATTAT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCATGAATTAT
*
53598 GGAATCCATGGTATCGATACCTTTCTCCTAG
66 GGAATCCATAGTATCGATACCTTTCTCCTAG
* *
53629 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
53685 TCCATATGGA
Statistics
Matches: 138, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
94 2 0.01
95 136 0.99
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (96 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCATGAATTAT
GGAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:53711 original size:33 final size:34
Alignment explanation
Indices: 53669--53753 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 34
53659 CTCCCTTTCA
*
53669 GTATCGATACCATTTCTCCA-TATGGATTCCAAG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
*** * *
53702 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
53736 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
53754 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTATGGAATCCAAG
Found at i:53744 original size:34 final size:33
Alignment explanation
Indices: 53669--53746 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
53659 CTCCCTTTCA
** *
53669 GTATCGATACCATTTCTCCATATGGATTCCAAG
1 GTATCGATACCATTTAGCCATATGGAATCCAAG
* * *
53702 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTAGCCA-TATGGAATCCAAG
53736 GTATCGATACC
1 GTATCGATACC
53747 TTTCTCCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
33 17 0.45
34 21 0.55
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (33 bp):
GTATCGATACCATTTAGCCATATGGAATCCAAG
Found at i:53802 original size:128 final size:128
Alignment explanation
Indices: 53574--53843 Score: 479
Period size: 128 Copynumber: 2.1 Consensus size: 128
53564 CTCCCTTTCA
*
53574 GTATCGATACCATTTATGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
53639 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
* *
53702 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
* *
53767 TCTATTCTATGGTATCAGTACTCCCTTTTAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
*
53830 GTATCAATA-CATTT
1 GTATCGATACCATTT
53844 CTCTTAGTAT
Statistics
Matches: 136, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
127 5 0.04
128 131 0.96
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (128 bp):
GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
Found at i:54440 original size:95 final size:95
Alignment explanation
Indices: 54301--54546 Score: 341
Period size: 95 Copynumber: 2.6 Consensus size: 95
54291 CATACTATGA
* * * * *
54301 TATCGATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTATG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATG
* *
54366 GAATCCATAGTATCGATACCTTTCTTCAAG
66 AAATCCATAGTATCGATACCTTTCTCCAAG
* *
54396 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATG
* *
54461 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCAAG
* * * *
54491 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
54547 TCCATATGGA
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 1 0.01
95 133 0.99
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATG
AAATCCATAGTATCGATACCTTTCTCCAAG
Found at i:54573 original size:33 final size:34
Alignment explanation
Indices: 54531--54615 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 34
54521 CTCCGTTTCA
*
54531 GTATCGATACCATTTCTCCA-TATGGATTCCAAG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
*** *
54564 GTATCGATACCATTTAGGCATTATGGAATCCATG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
*
54598 GTATCGATA-CTTTTCTCC
1 GTATCGATACCATTTCTCC
54616 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 22 0.52
34 20 0.48
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTATGGAATCCAAG
Found at i:54598 original size:128 final size:128
Alignment explanation
Indices: 54436--54702 Score: 455
Period size: 128 Copynumber: 2.1 Consensus size: 128
54426 CTCCCTTTCA
*
54436 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* *
54501 TCTATTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCAATATGGATTCCAAG
* * *
54564 GTATCGATACCATTTAGGCATTATGGAATCCATGGTATCGATACTTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
*
54629 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCAATATGGATTCCAAG
54692 GTATCGATACC
1 GTATCGATACC
54703 TTTCTCTTAG
Statistics
Matches: 131, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
127 1 0.01
128 130 0.99
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCAATATGGATTCCAAG
Found at i:54601 original size:34 final size:33
Alignment explanation
Indices: 54531--54607 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 33
54521 CTCCGTTTCA
** *
54531 GTATCGATACCATTTCTCCATATGGATTCCAAG
1 GTATCGATACCATTTAGCCATATGGAATCCAAG
* *
54564 GTATCGATACCATTTAGGCATTATGGAATCCATG
1 GTATCGATACCATTTAGCCA-TATGGAATCCAAG
54598 GTATCGATAC
1 GTATCGATAC
54608 TTTTCTCCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
33 17 0.45
34 21 0.55
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (33 bp):
GTATCGATACCATTTAGCCATATGGAATCCAAG
Found at i:55302 original size:95 final size:94
Alignment explanation
Indices: 55163--55408 Score: 307
Period size: 95 Copynumber: 2.6 Consensus size: 94
55153 CATACTATGA
* * * * *
55163 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCAATACCATTTCGGTATTCTT
1 TATCGATACTTCTATACTATGGTA-TGATACTCCCTTTCAGTATCGATACCATTTCGGCATTC-T
*
55228 G-AATCCATAGTATCGATACCTTTCTTCTAG
64 GAAATCCATAGTATCGATACCTTTCTCCTAG
* *
55258 TATCGATACTTCTATACTATGGTATTGATACTCCCTTTCGGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTA-TGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
55323 AAATCCATGGTATCGATACCTTTCTCCTAG
65 AAATCCATAGTATCGATACCTTTCTCCTAG
* * * * *
55353 TACCCATACTTCTATTA-TATGGTATCAGTACTCCGTTTCAGAATCGATACCATTTC
1 TATCGATACTTCTA-TACTATGGTATGA-TACTCCCTTTCAGTATCGATACCATTTC
55409 TCCATCTGGA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
94 4 0.03
95 125 0.95
96 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (94 bp):
TATCGATACTTCTATACTATGGTATGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGA
AATCCATAGTATCGATACCTTTCTCCTAG
Found at i:55527 original size:128 final size:128
Alignment explanation
Indices: 55297--55564 Score: 457
Period size: 128 Copynumber: 2.1 Consensus size: 128
55287 ACTCCCTTTC
*
55297 GGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATAC
1 GGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGAAACCTTTCTCCTAGTACCCATAC
* *
55362 TTCTATTATATGGTATCAGTACTCCGTTTCAGAATCGATACCATTTCTCCATCTGGATTTCAA
66 TTCTATTATATGGTATCAGTACTCCCTTTCAGAATCGATACCATTTCTCCATCTGGATTCCAA
* *
55425 GGTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGAAACCTTTCTCCTAGTACCGATAC
1 GGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGAAACCTTTCTCCTAGTACCCATAC
* *
55490 TTCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAA
66 TTCTATTATATGGTATCA-GTACTCCCTTTCAGAATCGATACCATTTCTCCATCTGGATTCCAA
55553 GGTATCGATACC
1 GGTATCGATACC
55565 TTTCTCTTAG
Statistics
Matches: 132, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
127 1 0.01
128 131 0.99
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (128 bp):
GGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGAAACCTTTCTCCTAGTACCCATAC
TTCTATTATATGGTATCAGTACTCCCTTTCAGAATCGATACCATTTCTCCATCTGGATTCCAA
Done.