Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000915.1 Hibiscus syriacus cultivar Beakdansim tig00001828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78834
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
File 2 of 2
Found at i:56163 original size:95 final size:95
Alignment explanation
Indices: 56024--56269 Score: 357
Period size: 95 Copynumber: 2.6 Consensus size: 95
56014 CATACTATGA
* * * * * *
56024 TATCGATACTTCTATACTACGATACCGATACTCCCTGTCAGTATCGATACCATTTCGGTATTATG
1 TATCGATACTTCTATACTATGGTATCAATACTCCCTTTCAGTATCGATACCATTTCGGCATTATG
* * *
56089 GAATCCATAGTATCGATTCCTTTCTTCTAG
66 GAACCCATAGTATCGATACCTTTCTCCTAG
*
56119 TATCGATACTTCTATACTATGGTATCAATACTCCCTTTCAGTATCGATACCATTTAGGCATTATG
1 TATCGATACTTCTATACTATGGTATCAATACTCCCTTTCAGTATCGATACCATTTCGGCATTATG
* *
56184 GAACCCATGGTATCGATACCTTTCTCCTTG
66 GAACCCATAGTATCGATACCTTTCTCCTAG
* * *
56214 TACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCAATACTCCCTTTCAGTATCGATACCATTTC
56270 TCCATCTGGA
Statistics
Matches: 135, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
95 135 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCAATACTCCCTTTCAGTATCGATACCATTTCGGCATTATG
GAACCCATAGTATCGATACCTTTCTCCTAG
Found at i:56296 original size:33 final size:34
Alignment explanation
Indices: 56254--56338 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
56244 CTCCCTTTCA
*
56254 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
56287 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
56321 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
56339 TAGTACCGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 21 0.49
34 22 0.51
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:56320 original size:128 final size:128
Alignment explanation
Indices: 56159--56425 Score: 489
Period size: 128 Copynumber: 2.1 Consensus size: 128
56149 CTCCCTTTCA
*
56159 GTATCGATACCATTTAGGCATTATGGAACCCATGGTATCGATACCTTTCTCCTTGTACCGATACT
1 GTATCGATACCATTTAGGCATTATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
56224 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* *
56287 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
56352 TCTATTCTATGGTATCAGTACTCCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
*
56415 GTATCAATACC
1 GTATCGATACC
56426 TTTCTCTTAG
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
128 134 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:57028 original size:95 final size:96
Alignment explanation
Indices: 56886--57131 Score: 363
Period size: 95 Copynumber: 2.6 Consensus size: 96
56876 CATACTATGA
* * * * * *
56886 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTTTCGATACCATTTCA-GTATTCT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCAGGAATTAT
*
56950 GGAATCCATAGTATCGATACCTTTCTTCTAG
66 GGAATCCATAGTATCGATACCTTTCTCCTAG
*
56981 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTTAGTATCGATACCATTT-AGGAATTAT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCAGGAATTAT
*
57045 GGAATCCATGGTATCGATACCTTTCTCCTAG
66 GGAATCCATAGTATCGATACCTTTCTCCTAG
* *
57076 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
57132 TCCATATGGA
Statistics
Matches: 136, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
94 2 0.01
95 134 0.99
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (96 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCAGGAATTAT
GGAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:57158 original size:33 final size:34
Alignment explanation
Indices: 57116--57200 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 34
57106 CTCCCTTTCA
*
57116 GTATCGATACCATTTCTCCA-TATGGATTCCAAG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
*** * *
57149 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTATGGAATCCAAG
57183 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
57201 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTATGGAATCCAAG
Found at i:57191 original size:34 final size:33
Alignment explanation
Indices: 57116--57193 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
57106 CTCCCTTTCA
** *
57116 GTATCGATACCATTTCTCCATATGGATTCCAAG
1 GTATCGATACCATTTAGCCATATGGAATCCAAG
* * *
57149 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTAGCCA-TATGGAATCCAAG
57183 GTATCGATACC
1 GTATCGATACC
57194 TTTCTCCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
33 17 0.45
34 21 0.55
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (33 bp):
GTATCGATACCATTTAGCCATATGGAATCCAAG
Found at i:57249 original size:128 final size:128
Alignment explanation
Indices: 57021--57287 Score: 498
Period size: 128 Copynumber: 2.1 Consensus size: 128
57011 CTCCCTTTTA
57021 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
57086 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
* *
57149 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
57214 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
*
57277 GTATCAATACC
1 GTATCGATACC
57288 TATCTCTTAG
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 135 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATATGGATTCCAAG
Found at i:57829 original size:860 final size:862
Alignment explanation
Indices: 51978--59612 Score: 13431
Period size: 862 Copynumber: 8.9 Consensus size: 862
51968 CTCCCTTTCA
*
51978 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
52043 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
52108 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
52173 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* * * * *
52238 ATCATATAAGGTAAAACATACATTAATTTAAGCATTTGAGCTGGAATTATTGTAAGTCTCTCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
* * **
52303 ACCTATATAATCACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGGCAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * *
52368 TTTGTCATTTCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAACCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCATTT
52433 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
52498 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* * *
52563 TACCCATACTATGATATCGATACTTCTATACTATGATACCGATATTCCCTTTCAGTATCGATACA
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
52628 ATTTCAGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
* * *
52693 GTATCGATACTCCCTTTCAGTATCGATACCATTTATGAATTATGGAATCCATGGTATCGATACCT
716 GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCT
*
52758 TTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
781 TTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
52823 TCCATATGGATTCCAAG
846 TCCATATGGATTCCAAG
52840 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
52905 TCTATTCTATGGTATCAGTACTCCCTTTTAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * *
52970 ATCAATACATTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGACATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
* *
53035 TTTTAAAACAGTTCTTAAACTAAATATTATTCATAATATCAATTCCACACACATTATAGACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
53100 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
*
53165 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
*
53230 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCATTT
* *
53295 AGTACACATACCATACAAATGTCAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
53360 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* * *
53425 TACCCATACTATGATATCGATACTTCTATACTATGATACCGATATTCCCTTTCAGTATCGATACA
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
53490 ATTTCAGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
* * *
53555 GTATCGATACTCCCTTTCAGTATCGATACCATTTATGAATTATGGAATCCATGGTATCGATACCT
716 GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCT
*
53620 TTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
781 TTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
53685 TCCATATGGATTCCAAG
846 TCCATATGGATTCCAAG
53702 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
53767 TCTATTCTATGGTATCAGTACTCCCTTTTAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* * *
53832 ATCAATACATTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGACATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
* *
53897 TTTTAAAACAGTTCTTAAACTAAATATTATTCATAATATCAATTCCACACACATTATAGACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
53962 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
*
54027 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
*
54092 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCATTT
* *
54157 AGTACACATACCATACAAATGTCAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
54222 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
*
54287 TACCCATACTATGATATCGATACTTCTATAATACGATACCGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
* *
54352 ATTTCGGTATTATGGAATCCATAGTATCGATACCTTTCTTCAAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
*
54417 GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCT
716 GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCT
*
54482 TTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTTC
781 TTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
54547 TCCATATGGATTCCAAG
846 TCCATATGGATTCCAAG
* *
54564 GTATCGATACCATTTAGGCATTATGGAATCCATGGTATCGATACTTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
54629 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
54693 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
*
54758 ATTTTAAAACTGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
*
54823 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGTACTTATTGTGAGTCTCCCTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
* * * *
54888 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCTGTAGTGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * *
54952 ACGTTT-TCCTTGCCTTTTTTCTTGCCTGACT-CGAGAGCTTGGTTATAATCTACATAAGCACCC
389 AC-TTTGTCCTTGCCCTTTTTCTTACCTGACTAAG-GAGCTTGGTTATAATCTACATAAGCACCC
55015 ATTTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
452 ATTTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAA
*
55080 AAGTACTAATACTTTTAATTTCTATAACAACTTTAACCTATCTTATAATTCCTGGCTCAATAGTA
517 AAGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTA
*
55145 TCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCAA
582 TCGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGA
*
55210 TACCATTTCGGTATTCTTGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATAC
647 TACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATAC
* * *
55275 TATGGTATTGATACTCCCTTTCGGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGAT
712 TATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGAT
* * *
55340 ACCTTTCTCCTAGTACCCATACTTCTATTATATGGTATCAGTACTCCGTTTCAGAATCGATACCA
777 ACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCA
* *
55405 TTTCTCCATCTGGATTTCAAG
842 TTTCTCCATATGGATTCCAAG
*
55426 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGAAACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
55491 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
* * *
55555 TATCGATACCTTTCTCTTAGTATTGATATTTTTATGCCAAATACACAGGTAGGCATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
*
55620 ATTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
* *
55685 TATCATATAAGGTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCACTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
* * * * *
55750 AACCCATATAATTACAACATATAG-ACTCACCTGATATGCTGTAGTGACGTCTAACTACTCAAAA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * * *
55814 ACTTTTTCCTTGCCTTTTTTCTTGCCTGACT-CGAAGCTTGGTTATAATCTACATAAGCACCCAT
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCAT
55878 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
454 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
55943 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
519 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
*
56008 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTGTCAGTATCGATA
584 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
* *
56073 CCATTTCGGTATTATGGAATCCATAGTATCGATTCCTTTCTTCTAGTATCGATACTTCTATACTA
649 CCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTA
* * *
56138 TGGTATCAATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGGAACCCATGGTATCGATAC
714 TGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATAC
* *
56203 CTTTCTCCTTGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATT
779 CTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATT
*
56268 TCTCCATCTGGATTCCAAG
844 TCTCCATATGGATTCCAAG
56287 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
56352 TCTATTCTATGGTATCAGTACTCCATTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
56417 ATCAATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCAAAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
56482 TTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
56547 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
*
56612 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
* * *
56677 TTTGTCCTTGCCCTTTTTCTTATCTGACTAAGGAGCTTGGTTATAATCAACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCATTT
* *
56742 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATAATTTAGTAATACTCAAAAGT
456 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
56807 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
*
56872 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTTTCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
56937 ATTTCAGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
* * *
57002 GTATCGATACTCCCTTTTAGTATCGATACCATTTAGGAATTATGGAATCCATGGTATCGATACCT
716 GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCT
*
57067 TTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
781 TTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
57132 TCCATATGGATTCCAAG
846 TCCATATGGATTCCAAG
57149 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
57214 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
* *
57279 ATCAATACCTATCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
57344 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATT-C-CACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
57407 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
*
57472 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCCACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
*
57537 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCATTT
*
57602 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
456 AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
57667 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
57732 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
*
57797 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTTGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
* *
57862 GTATCGATACTCCCTTCCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCT
716 GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCT
*
57927 TTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATTTC
781 TTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
* *
57992 TCCATCTGGATTTCAAG
846 TCCATATGGATTCCAAG
*
58009 GTATCGATACCATTTAGGCATTTTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
58074 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGG-TTCCAAGG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
*
58137 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGACATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
*
58202 ATTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
* * *
58267 TATCATATAAGGTAAAATATACATTAATTTAAACATTTGAGGTGGACTTATTGAGAGTCTCACTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
* * * * * *
58332 AACCCATATAATTACAACATATAG-ATTAACCTGATATGCTGTAGTGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * * * * *
58396 ACTTTTTCCTTGCCTTTTTTCTTGCCTGAC-ACGAAGCTTGGTTATAATCTACATAAACACCTAT
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCAT
58460 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
454 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
58525 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
519 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
58590 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
584 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
58655 CCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTA
649 CCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTA
* *
58720 TGGTATCGATACTCCCTTCCAGTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATAC
714 TGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATAC
*
58785 CTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCGTTTCAGTATCGATACCATT
779 CTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATT
* *
58850 TCTCCATCTGGATTTCAAG
844 TCTCCATATGGATTCCAAG
58869 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
58934 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGG-TTCCAAGG
66 TCTATTCTATGGTATCA-GTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGG
*
58997 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGACATTTATCTTTC
130 TATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTC
* *
59062 ATTTTAAAATAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACAC-TTATAAA-ACA
195 ATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATA
* * *
59125 TATCATATAAGGTAAAATATACATTAA-TTAAACATTTGAGGTGGACTTATTGAGAGTCTCACTC
260 TATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTC
* * * * *
59189 AACCCATATAATTACAACATATAG-ATTCACCTGATATGCTGTAGTGACGTCTAACTACTCAACA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACA
* * * * * * *
59253 ACTTTTTCCTTGCCTTTTTTCTTGCCTGAC-ACGAAGCTTGGTTATAATCTACATAAACACCTAT
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCAT
59317 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
454 TTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAA
*
59382 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCGATAGTATC
519 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
*
59447 GATACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
584 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATA
* * *
59512 CCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTA
649 CCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTA
59577 TGGTATC-AGTACTCCCTTTCAGTATCGATACCATTT
714 TGGTATCGA-TACTCCCTTTCAGTATCGATACCATTT
59613 CTCCATCTGG
Statistics
Matches: 6570, Mismatches: 190, Indels: 31
0.97 0.03 0.00
Matches are distributed among these distances:
856 1 0.00
857 452 0.07
858 29 0.00
859 122 0.02
860 1404 0.21
861 984 0.15
862 3574 0.54
863 4 0.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (862 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCA
ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCAACAAC
TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACATAAGCACCCATTT
AGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGT
ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACC
ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
GTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGAAATCCATGGTATCGATACCT
TTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTC
TCCATATGGATTCCAAG
Found at i:57885 original size:95 final size:95
Alignment explanation
Indices: 57746--57991 Score: 350
Period size: 95 Copynumber: 2.6 Consensus size: 95
57736 CATACTATGA
* * * *
57746 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* * *
57811 GAATCCATAGTATCGATACCTTTCTTCTTG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* *
57841 TATCGATACTTCTATACTATGGTATCGATACTCCCTTCCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
57906 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * * *
57936 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
57992 TCCATCTGGA
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 1 0.01
95 133 0.99
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
AAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:58039 original size:128 final size:127
Alignment explanation
Indices: 57881--58146 Score: 462
Period size: 128 Copynumber: 2.1 Consensus size: 127
57871 CTCCCTTCCA
57881 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* *
57946 TCTATTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTTCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGG-TTCCAAG
* * *
58009 GTATCGATACCATTTAGGCATTTTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
58074 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGTTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGTTCCAAG
58136 GTATCGATACC
1 GTATCGATACC
58147 TTTCTCTTAG
Statistics
Matches: 132, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
127 18 0.14
128 114 0.86
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (127 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGTTCCAAG
Found at i:58745 original size:95 final size:95
Alignment explanation
Indices: 58606--58851 Score: 359
Period size: 95 Copynumber: 2.6 Consensus size: 95
58596 CATACTATGA
* * * *
58606 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* *
58671 GAATCCATAGTATCGATACCTTTCTTCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* *
58701 TATCGATACTTCTATACTATGGTATCGATACTCCCTTCCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
58766 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * * *
58796 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
58852 TCCATCTGGA
Statistics
Matches: 135, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
94 1 0.01
95 134 0.99
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
AAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:58873 original size:33 final size:34
Alignment explanation
Indices: 58836--58920 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 34
58826 CTCCGTTTCA
* *
58836 GTATCGATACCATTTCTCCA-TCTGGATTTCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
58869 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
58903 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
58921 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:58900 original size:128 final size:127
Alignment explanation
Indices: 58741--59006 Score: 471
Period size: 128 Copynumber: 2.1 Consensus size: 127
58731 CTCCCTTCCA
58741 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* *
58806 TCTATTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTTCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGG-TTCCAAG
* *
58869 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
58934 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGTTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGTTCCAAG
58996 GTATCGATACC
1 GTATCGATACC
59007 TTTCTCTTAG
Statistics
Matches: 133, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
127 18 0.14
128 115 0.86
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (127 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGTTCCAAG
Found at i:58906 original size:34 final size:33
Alignment explanation
Indices: 58836--58913 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
58826 CTCCGTTTCA
** * *
58836 GTATCGATACCATTTCTCCATCTGGATTTCAAG
1 GTATCGATACCATTTAGCCATCTGGAATCCAAG
* *
58869 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTAGCCA-TCTGGAATCCAAG
58903 GTATCGATACC
1 GTATCGATACC
58914 TTTCTCCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
33 17 0.45
34 21 0.55
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (33 bp):
GTATCGATACCATTTAGCCATCTGGAATCCAAG
Found at i:59640 original size:33 final size:34
Alignment explanation
Indices: 59598--59682 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 34
59588 CTCCCTTTCA
*
59598 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** * *
59631 GTATCGATACCATTTAGGCATTCTTGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
59665 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
59683 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:59673 original size:34 final size:33
Alignment explanation
Indices: 59598--59675 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
59588 CTCCCTTTCA
** *
59598 GTATCGATACCATTTCTCCATCTGGATTCCAAG
1 GTATCGATACCATTTAGCCATCTGGAATCCAAG
* * *
59631 GTATCGATACCATTTAGGCATTCTTGAATCCATG
1 GTATCGATACCATTTAGCCA-TCTGGAATCCAAG
59665 GTATCGATACC
1 GTATCGATACC
59676 TTTCTCCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
33 17 0.45
34 21 0.55
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (33 bp):
GTATCGATACCATTTAGCCATCTGGAATCCAAG
Found at i:59731 original size:128 final size:128
Alignment explanation
Indices: 59503--59772 Score: 488
Period size: 128 Copynumber: 2.1 Consensus size: 128
59493 CTCCCTTTCA
* *
59503 GTATCGATACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACT
59568 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* *
59631 GTATCGATACCATTTAGGCATTCTTGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACT
59696 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
*
59759 GTATCAATA-CATTT
1 GTATCGATACCATTT
59773 CTCTTAGTAT
Statistics
Matches: 137, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
127 5 0.04
128 132 0.96
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:60279 original size:767 final size:762
Alignment explanation
Indices: 58701--60379 Score: 2842
Period size: 767 Copynumber: 2.2 Consensus size: 762
58691 TTTCTTCTAG
* * * * *
58701 TATCGATACTTCTATACTATGGTATCGATACTCCCTTCCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
* * * *
58766 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
66 GAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCC
*
58831 TTTCAGTATCGATACCATTTCTCCATCTGGATTTCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
58896 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
* *
58961 TCAGTATCGATACCATTTCTCCATCTGGTTCCAAGGTATCGATACCTTTCTCTTAGTATTGATAT
261 TCAGTATCGATACCATTTCTCCATCTGGTTCCAAGGTATCAATACATTTCTCTTAGTATTGATAT
* *
59026 CTTTATGCCAAATGCACAGTTAGACATTTATCTTTCATTTTAAAATAGTTCTTAAACTAAAAATT
326 CTTTATGCCAAATGCAAAGTTAGACATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATT
*
59091 ATTCATAATATCAATTCCACACACTTATAAAACATATCATATAAGGTAAAATATACATTAATTAA
391 ATTCATAATATCAATTCCACACACTTATAAAACATATCATATAAGGTAAAACATACATTAATTAA
* *
59156 ACATTTGAGGTGGACTTATTGAGAGTCTCACTCAACCCATATAATTACAACATATAGATTCACCT
456 ACATTTGAGGTGGACTTATTCAGAGTCTCACTCAACCCATATAATTACAACATATAGACTCACCT
* * * * * * * *
59221 GATATGCTGTAGTGACGTCTAACTACTCAACAACTTTTTCCTTGCCTTTTTTCTTGCCTGACACG
521 AATATACTGTAGTGACGTCCAACTACTCAACAACTTTATCCTTGCCCTTTTTCATACCTGACAAG
* * *
59286 AAGCTTGGTTATAATCTACATAAACACCTATTTAGTTCACATACCATACAAATGTTAGTATATTA
586 AAGCTTGGTTATAATCTACACAAACACCCATTTAGTACACATACCATACAAATGTTAGTATATTA
59351 TCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAA
651 TCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAA
*
59416 CCTATCTTATAATTCCTGGCTCGATAGTATCGATACCCATACTATGA
716 CCTATCTTATAATTCCTGGCTCAATAGTATCGATACCCATACTATGA
*
59463 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
59528 GAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCC
66 GAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCC
*
59593 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTTGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
59658 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCA-GTACTCCCT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTAT-ATGTACTCCCT
59722 TTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCAATACATTTCTCTTAGTATTGAT
260 TTCAGTATCGATACCATTTCTCCATCTGG-TTCCAAGGTATCAATACATTTCTCTTAGTATTGAT
*
59787 ATCTTTATGCCAAATGCAAAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAA
324 ATCTTTATGCCAAATGCAAAGTTAGACATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAA
*
59852 TTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
389 TTATTCATAATATCAATTCCACACAC-TTATAAA-ACATATCATATAAGGTAAAACATACATTAA
* * *
59917 TTTAAACATTTGAGGTGGACTTATTCTGAGTCTCCCTCAACCCATATAATTACAATATAT-GCAC
452 -TTAAACATTTGAGGTGGACTTATTCAGAGTCTCACTCAACCCATATAATTACAACATATAG-AC
* *
59981 TCACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTATCCTTGCCCTTTTTCATATCT
515 TCACCTAATATACTGTAGTGACGTCCAACTACTCAACAACTTTATCCTTGCCCTTTTTCATACCT
* *
60046 GACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAG
580 GAC-AAGAAGCTTGGTTATAATCTACACAAACACCCATTTAGTACACATACCATACAAATGTTAG
60111 TATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACA
644 TATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACA
*
60176 ACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGA
709 ACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGATACCCATACTATGA
*
60230 TATCGATACTTCTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
* * * * *
60295 GAATCCATAGTATCTATACCTTTTTTCTAGTATCGATACTTCTATACTATGGTATC-GATACTCC
66 GAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAG-TACTCC
60359 CTTTCAGTATCGATACCATTT
130 CTTTCAGTATCGATACCATTT
60380 AGGCCTTCTG
Statistics
Matches: 861, Mismatches: 48, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
762 274 0.32
763 122 0.14
764 7 0.01
765 29 0.03
766 116 0.13
767 313 0.36
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (762 bp):
TATCGATACTTCTATACTATGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
GAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCC
TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
TCAGTATCGATACCATTTCTCCATCTGGTTCCAAGGTATCAATACATTTCTCTTAGTATTGATAT
CTTTATGCCAAATGCAAAGTTAGACATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAATT
ATTCATAATATCAATTCCACACACTTATAAAACATATCATATAAGGTAAAACATACATTAATTAA
ACATTTGAGGTGGACTTATTCAGAGTCTCACTCAACCCATATAATTACAACATATAGACTCACCT
AATATACTGTAGTGACGTCCAACTACTCAACAACTTTATCCTTGCCCTTTTTCATACCTGACAAG
AAGCTTGGTTATAATCTACACAAACACCCATTTAGTACACATACCATACAAATGTTAGTATATTA
TCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAACTTCAA
CCTATCTTATAATTCCTGGCTCAATAGTATCGATACCCATACTATGA
Found at i:60369 original size:95 final size:95
Alignment explanation
Indices: 60230--60503 Score: 345
Period size: 95 Copynumber: 2.9 Consensus size: 95
60220 CATACTATGA
* * * *
60230 TATCGATACTTCTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* * * *
60295 GAATCCATAGTATCTATACCTTTTTTCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* *
60325 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCCTTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
*
60390 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * * * **
60420 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTCTCCA-TCT
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGCATTCT
* * *
60483 GGATTCCATGGTATCGATACC
65 GAAATCCATAGTATCGATACC
60504 ATTTAGGCAT
Statistics
Matches: 157, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
94 23 0.15
95 134 0.85
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
AAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:60502 original size:33 final size:34
Alignment explanation
Indices: 60460--60544 Score: 120
Period size: 34 Copynumber: 2.6 Consensus size: 34
60450 CTCCGTTTCA
*
60460 GTATCGATACCATTTCTCCA-TCTGGATTCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCATG
***
60493 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCATG
60527 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
60545 TAGTACCGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 21 0.48
34 23 0.52
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCATG
Found at i:60509 original size:128 final size:128
Alignment explanation
Indices: 60365--60631 Score: 455
Period size: 128 Copynumber: 2.1 Consensus size: 128
60355 CTCCCTTTCA
*
60365 GTATCGATACCATTTAGGCCTTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* * * *
60430 TCTATTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTCCATG
66 TCTATTCTATGGTA-AATGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
* *
60493 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
60558 TCTATTCTATGGTAAATGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
66 TCTATTCTATGGTAAATGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
60621 GTATCGATACC
1 GTATCGATACC
60632 TTTCTCTTAG
Statistics
Matches: 131, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
127 1 0.01
128 130 0.99
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTAAATGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
Found at i:61270 original size:95 final size:95
Alignment explanation
Indices: 61091--61335 Score: 314
Period size: 95 Copynumber: 2.6 Consensus size: 95
61081 CATACTATGA
* * * * * *
61091 TATCGATACTTCTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTTTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
* * * * *
61156 GAATCCATAGTATCTATACCTTTTTTCTAG
66 AAATCCATAGTAGCGATACCTTTCTCCTAG
61186 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
* *
61251 AAATCTATGGTAGCGATACCTTTCTCCTAG
66 AAATCCATAGTAGCGATACCTTTCTCCTAG
* * *
61281 TA-CACATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTT
1 TATC-GATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTT
61336 CTCCATCTGG
Statistics
Matches: 132, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
94 2 0.02
95 130 0.98
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.39
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
AAATCCATAGTAGCGATACCTTTCTCCTAG
Found at i:61363 original size:33 final size:34
Alignment explanation
Indices: 61321--61405 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
61311 CTCCGTTTCA
*
61321 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
61354 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
61388 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
61406 TAGTACCGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 21 0.49
34 22 0.51
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:61396 original size:128 final size:128
Alignment explanation
Indices: 61226--61492 Score: 457
Period size: 128 Copynumber: 2.1 Consensus size: 128
61216 CTCCCTTTCA
*
61226 GTATCGATACCATTTAGGCATTCTGAAATCTATGGTAGCGATACCTTTCTCCTAGTACAC-ATAC
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTAGCGATACCTTTCTCCTAGTAC-CGATAC
* *
61290 TTCTATTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
65 TTATATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* *
61354 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTAGCGATACCTTTCTCCTAGTACCGATACT
61419 TATATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TATATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
61482 GTATCGATACC
1 GTATCGATACC
61493 TTTCTCTTAG
Statistics
Matches: 132, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
127 2 0.02
128 130 0.98
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTAGCGATACCTTTCTCCTAGTACCGATACT
TATATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:62092 original size:95 final size:95
Alignment explanation
Indices: 61953--62198 Score: 359
Period size: 95 Copynumber: 2.6 Consensus size: 95
61943 CATACTATGA
* * * * **
61953 TATCGATACTTCTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATGATG
* *
62018 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAACCCATAGTATCGATACCTTTCTCCTAG
* *
62048 TATCAATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATGATG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATGATG
*
62113 GAACCCATGGTATCGATACCTTTCTCCTAG
66 GAACCCATAGTATCGATACCTTTCTCCTAG
* *
62143 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
62199 TCCATCTGGA
Statistics
Matches: 135, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
94 1 0.01
95 134 0.99
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATGATG
GAACCCATAGTATCGATACCTTTCTCCTAG
Found at i:62225 original size:33 final size:34
Alignment explanation
Indices: 62183--62267 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
62173 CTCCCTTTCA
*
62183 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
62216 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
62250 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
62268 TAGTACCGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 21 0.49
34 22 0.51
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:62316 original size:128 final size:127
Alignment explanation
Indices: 62088--62353 Score: 478
Period size: 128 Copynumber: 2.1 Consensus size: 127
62078 CTCCCTTTCA
62088 GTATCGATACCATTTAGGCATGATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATGATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
62153 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATT-CAAG
** *
62216 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATGATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
62281 TCTATTCTATGGTATCAGTACTTCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCAAG
*
62343 GTATCAATACC
1 GTATCGATACC
62354 TTTCTCTTAG
Statistics
Matches: 133, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
127 14 0.11
128 119 0.89
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.35
Consensus pattern (127 bp):
GTATCGATACCATTTAGGCATGATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCAAG
Found at i:62986 original size:95 final size:95
Alignment explanation
Indices: 62813--63057 Score: 321
Period size: 95 Copynumber: 2.6 Consensus size: 95
62803 CATACTATGA
* * * *
62813 TATCGATACTTCTATACTATGATACCGAAACTCCCTTTCAGTATTGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGAAACTCCCTTTCAGTATTGATACCATTTAGGCATTCTG
* * * *
62878 GAATCCATAGTATCTATACCTTTTTTCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* *
62908 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGAAACTCCCTTTCAGTATTGATACCATTTAGGCATTCTG
* *
62973 AAATCTATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * * * *
63003 TACCCATACTTCTATTCTATGGTATC-AGCACTCCGTTTCAGTATTGATACCATTT
1 TATCGATACTTCTATACTATGGTATCGA-AACTCCCTTTCAGTATTGATACCATTT
63058 CTCCATCTGG
Statistics
Matches: 131, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
94 1 0.01
95 130 0.99
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.39
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGAAACTCCCTTTCAGTATTGATACCATTTAGGCATTCTG
AAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:63090 original size:33 final size:34
Alignment explanation
Indices: 63043--63127 Score: 102
Period size: 34 Copynumber: 2.6 Consensus size: 34
63033 CTCCGTTTCA
* *
63043 GTATTGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
63076 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
63110 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
63128 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 20 0.48
34 22 0.52
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:63118 original size:128 final size:128
Alignment explanation
Indices: 62948--63214 Score: 455
Period size: 128 Copynumber: 2.1 Consensus size: 128
62938 CTCCCTTTCA
*
62948 GTATCGATACCATTTAGGCATTCTGAAATCTATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* * *
63013 TCTATTCTATGGTATCA-GCACTCCGTTTCAGTATTGATACCATTTCTCCATCTGGATTCCAAG
66 TATATTCTATGGTAT-ATGCACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* *
63076 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
*
63141 TATATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TATATTCTATGGTATATGCACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
63204 GTATCGATACC
1 GTATCGATACC
63215 TTTCTCTTAG
Statistics
Matches: 131, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
127 1 0.01
128 130 0.99
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TATATTCTATGGTATATGCACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:63814 original size:95 final size:95
Alignment explanation
Indices: 63675--63920 Score: 359
Period size: 95 Copynumber: 2.6 Consensus size: 95
63665 CATACTATGA
* * * * **
63675 TATCGATACTTCTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATGATG
* *
63740 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAACCCATAGTATCGATACCTTTCTCCTAG
* *
63770 TATCAATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATGATG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATGATG
*
63835 GAACCCATGGTATCGATACCTTTCTCCTAG
66 GAACCCATAGTATCGATACCTTTCTCCTAG
* *
63865 TACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
63921 TCCATCTGGA
Statistics
Matches: 135, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
94 1 0.01
95 134 0.99
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATGATG
GAACCCATAGTATCGATACCTTTCTCCTAG
Found at i:63947 original size:33 final size:34
Alignment explanation
Indices: 63905--63989 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
63895 CTCCCTTTCA
*
63905 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
63938 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
63972 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
63990 TAGTACCGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 21 0.49
34 22 0.51
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:64038 original size:128 final size:128
Alignment explanation
Indices: 63810--64076 Score: 489
Period size: 128 Copynumber: 2.1 Consensus size: 128
63800 CTCCCTTTCA
63810 GTATCGATACCATTTAGGCATGATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATGATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
63875 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
** *
63938 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATGATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
64003 TCTATTCTATGGTATCAGTACTTCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
*
64066 GTATCAATACC
1 GTATCGATACC
64077 TTTCTCTTAG
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
128 134 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.35
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATGATGGAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:64671 original size:95 final size:95
Alignment explanation
Indices: 64532--64777 Score: 305
Period size: 95 Copynumber: 2.6 Consensus size: 95
64522 CATACTATGA
* * * *
64532 TATCGATACTTCTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* * * *
64597 GAATCCATAGTATCTATACCTTTTTTATAG
66 AAATCCATAGTATCGATACCTTTCTCATAG
*
64627 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
* ** *
64692 AAATCCATGGTATCGATTTCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCATAG
* * * * * *
64722 TACCCATACTTCTATTCTATGGTATC-AGTAATCCGTTTCAGTAACGATACCATTTC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
64778 TCCATCTGGA
Statistics
Matches: 130, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
94 1 0.01
95 129 0.99
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTG
AAATCCATAGTATCGATACCTTTCTCATAG
Found at i:64808 original size:33 final size:34
Alignment explanation
Indices: 64766--64846 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 34
64756 GTTTCAGTAA
*
64766 CGATACCATTTCTCCA-TCTGGATTCCAAGGTAT
1 CGATACCATTTCTCCATTCTGGAATCCAAGGTAT
*** *
64799 CGATACCATTTAGGCATTCTGGAATCCATGGTAT
1 CGATACCATTTCTCCATTCTGGAATCCAAGGTAT
64833 CGATACC-TTTCTCC
1 CGATACCATTTCTCC
64847 TAGTACCGAT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
33 17 0.44
34 22 0.56
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.33
Consensus pattern (34 bp):
CGATACCATTTCTCCATTCTGGAATCCAAGGTAT
Found at i:64819 original size:128 final size:128
Alignment explanation
Indices: 64667--64933 Score: 455
Period size: 128 Copynumber: 2.1 Consensus size: 128
64657 CTCCCTTTCA
**
64667 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATTTCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
*
64732 TCTATTCTATGGTATCA-GTAATCCGTTTCAGTAACGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTAT-ATGTAATCCCTTTCAGTAACGATACCATTTCTCCATCTGGATTCCAAG
* *
64795 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* *
64860 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATATGTAATCCCTTTCAGTAACGATACCATTTCTCCATCTGGATTCCAAG
64923 GTATCGATACC
1 GTATCGATACC
64934 TTTCTCTTAG
Statistics
Matches: 131, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
127 1 0.01
128 130 0.99
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTAATCCCTTTCAGTAACGATACCATTTCTCCATCTGGATTCCAAG
Found at i:65467 original size:862 final size:862
Alignment explanation
Indices: 59463--69979 Score: 18777
Period size: 862 Copynumber: 12.2 Consensus size: 862
59453 CATACTATGA
* * * * *
59463 TATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
* * * *
59528 GAATCCATAGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCC
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
*
59593 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTTGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
59658 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCA-GTACTCCCT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTAT-ATGTACTCCCT
* *
59722 TTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCAATACATTTCTCTTAGTATTGAT
260 TTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGAT
*
59787 ATCTTTATGCCAAATGCAAAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAA
325 ATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAA
59852 TTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
390 TTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
* * *
59917 TTTAAACATTTGAGGTGGACTTATTCTGAGTCTCCCTCAACCCATATAATTACAATATATGCACT
455 TTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACT
* * *
59982 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTATCCTTGCCCTTTTTCATATCTG
520 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
60047 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
585 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
60112 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
650 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
60177 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
715 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
60242 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
780 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
* *
60307 TCTATACCTTTTTTCTAG
845 TCGATACCTTTCTTCTAG
*
60325 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCCTTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
60390 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
*
60455 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCATGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
*
60520 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTAAATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
*
60585 TCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
261 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
*
60650 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAATAT
326 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
*
60715 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTATT
391 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
60780 TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
456 TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
* *
60845 AACTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCATTTTTCTTACCTGA
521 ACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGA
60910 CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
586 CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
60975 TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAC
651 TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAC
61040 TTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTA-CCATACTATGATATCGATACTTCT
716 TTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCT
*
61104 ATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTTTGGAATCCATAGTAT
781 ATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTAT
* *
61169 CTATACCTTTTTTCTAG
846 CGATACCTTTCTTCTAG
61186 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
* * *
61251 AAATCTATGGTAGCGATACCTTTCTCCTAGTACACATACTTCTATTCTATGGTATCAGTACTCCG
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
61316 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
*
61381 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTATATTCTATGGTATATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
61446 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
261 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
* *
61511 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAAATAAATAT
326 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
61576 TATTCATAATAT-AATCTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
391 TATTCATAATATCAAT-TCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
*
61640 TTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACATTATATGCACT
455 TTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACT
*
61705 CAACTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
520 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
61770 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
585 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
61835 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
650 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
61900 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
715 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
61965 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
780 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
62030 TCGATACCTTTCTTCTAG
845 TCGATACCTTTCTTCTAG
* **
62048 TATCAATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATGATG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
* * * *
62113 GAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCC
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
62178 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
*
62243 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCA-GTACTTCCT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTAT-ATGTACTCCCT
*
62307 TTCAGTATCGATACCATTTCTCCATCTGGATT-CAAGGTATCAATACCTTTCTCTTAGTATTGAT
260 TTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGAT
* * *
62371 ATATTTATTCCAAATGCAAAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAA
325 ATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAA
62436 TTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
390 TTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
* * *
62501 TTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCGTCAACCCATATAATTACAATATATGCACT
455 TTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACT
62566 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
520 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
62631 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
585 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
62696 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
650 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
*
62761 CTTCAACTTATCTTATAATTCCTGGCTCAATAGTATCGGTA-CCATACTATGATATCGATACTTC
715 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
*
62825 TATACTATGATACCGAAACTCCCTTTCAGTATTGATACCATTTCGGTATTCTGGAATCCATAGTA
780 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
* *
62890 TCTATACCTTTTTTCTAG
845 TCGATACCTTTCTTCTAG
62908 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
* *
62973 AAATCTATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGCACTCCG
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
*
63038 TTTCAGTATTGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
*
63103 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTATATTCTATGGTATATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
63168 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
261 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
* *
63233 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAAATAAATAT
326 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
63298 TATTCATAATAT-AATCTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
391 TATTCATAATATCAAT-TCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
*
63362 TTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACATTATATGCACT
455 TTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACT
*
63427 CAACTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
520 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
* *
63492 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCAGTTAGTACACATACCATACAAATGTTATT
585 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
63557 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
650 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
63622 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
715 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
63687 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
780 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
63752 TCGATACCTTTCTTCTAG
845 TCGATACCTTTCTTCTAG
* **
63770 TATCAATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATGATG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
* * * *
63835 GAACCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCC
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
63900 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
*
63965 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCA-GTACTTCCT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTAT-ATGTACTCCCT
*
64029 TTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCAATACCTTTCTCTTAGTATTGAT
260 TTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGAT
*
64094 A----TATTCCAAATGCA-AGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAA
325 ATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAA
64154 TTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
390 TTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAA
* * *
64219 TTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCGTCAACCCATATAATTACAATATATGCACT
455 TTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACT
64284 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
520 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
64349 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
585 ACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGT
*
64414 ATATTATCTAACATTTATAATTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
650 ATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAA
64479 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
715 CTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTC
64544 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
780 TATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTA
* * *
64609 TCTATACCTTTTTTATAG
845 TCGATACCTTTCTTCTAG
64627 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
** *
64692 AAATCCATGGTATCGATTTCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTAATCCG
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
*
64757 TTTCAGTAACGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
64822 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
64887 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
261 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
* * *
64952 TCTTTATGCCAAATGCACAGTTATGCATTTATCTTTCATTTTAAAACAATTCTTAAACTAAATAT
326 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
* * * *
65017 TATTCAAAATATCAATTCCACACACATTATAAACTTATATCATATAAGGAAAAACATATATTAAT
391 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
* *
65082 TTAAACATTTGTGGTGGAATTATTATAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
456 TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
* *
65147 ACCTAATATACTGTAGTGACGTACAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACATGA
521 ACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGA
65212 CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
586 CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
65277 TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAC
651 TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAC
*
65342 TTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCTATACTTCT
716 TTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCT
* *
65407 ATACTATTATACCGAAACTCCCTTTCAGTATCGATACCATTTCTGTATTCTGGAATCCATAGTAT
781 ATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTAT
* *
65472 CTATACCTTTTTTCTAG
846 CGATACCTTTCTTCTAG
* *
65489 TATCGATACTTCTATACTATGGTCTCGATACTCCCTTTCAGTATCAATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
*
65554 AAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
65619 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
65684 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
65749 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
261 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
* *
65814 TCTTTATGCCAAATGCACAGTTAAGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAATAT
326 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
65879 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
391 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
65944 TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
456 TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
66009 ACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGA
521 ACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGA
66074 CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
586 CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
*
66139 TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAA
651 TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAC
*
66204 TTCAACCTACCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCT
716 TTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCT
* * * * * *
66269 ATACTACGATACCGATACTCCCTTTTAGTATCGATACAATTTCGGAATTCTAGAATCCATAGTAT
781 ATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTAT
66334 CGATACCTTTCTTCTAG
846 CGATACCTTTCTTCTAG
* *
66351 TATCTATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTTTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
*
66416 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCAG
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
*
66481 TTTCAGTATCGATACCATTTCTCCATCTGGATTCTAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
66546 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
*
66611 TCAATATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
261 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
*
66676 TATTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
326 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
*
66741 TATTCATAATATCAATTCCACAGACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
391 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
* * * *
66806 TTAAACATTTGAGGTGCACTTATTGTGAGTCTCCCTCAACCCATATAATTACAACATATAG-ACT
456 TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATAT-GCACT
* * * * * * * *
66870 CACCTGATATGCTGTAGTGACGTCTAACTACTCAATAACTTTTTCCTTGCCTTTTTTCTTGCCTG
520 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
* * *
66935 ACT-CGAGAGCTTGGTTATAATCTACATAAGCACCCATTTAGTTCACATACCATACAAATGTTAG
585 ACTAAG-GAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAG
66999 TATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACA
649 TATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACA
67064 ACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTT
714 ACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTT
* * *
67129 CTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTAGAATCCATAGT
779 CTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGT
67194 ATCGATACCTTTCTTCTAG
844 ATCGATACCTTTCTTCTAG
* *
67213 AATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCAATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
*
67278 AAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
67343 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
*
67408 ATCCATGGTATCGATACCTTTCTCTTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
* *
67473 TCAGTATCGATACCATTTCTCCATCTGGATTCCTATGTATCGATACCTTTCTCTTAGTATTGATA
261 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
* * *
67538 TCTTTATGCCAAATGCACAGTTAAGCATTTATCTTTTATTTTAAAACAGTTCTTAAACTAAATAT
326 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
*
67603 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAGACATACATTAAT
391 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
*
67668 TTATACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
456 TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
67733 ACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGA
521 ACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGA
67798 CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
586 CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
*
67863 TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAA
651 TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAC
67928 TTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCT
716 TTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCT
* * * * *
67993 ATACTACGATACCGATACTCCCTTTTAGTATCGATACAATTTCGGAATTCTGGAATCCATAGTAT
781 ATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTAT
68058 CGATACCTTTCTTCTAG
846 CGATACCTTTCTTCTAG
* *
68075 TATCTATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTTTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
*
68140 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCAG
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
68205 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
68270 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
196 ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
*
68335 TCAATATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
261 TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
* *
68400 TATTTATGCGAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
326 TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
*
68465 TATTCATAATATCAATTCCACAGACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
391 TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
* * * *
68530 TTAAACATTTGAGGTGCACTTATTGTGAGTCTCCCTCAACCCATATAATTACAACATATAG-ACT
456 TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATAT-GCACT
* * * * * * *
68594 CACCTGATATGCTGTAGTGACGTCTAACTACTCAACAACTTTTTCCTTGCCTTTTTTCTTGCCTG
520 CACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTG
* * *
68659 ACT-CGAGAGCTTGGTTATAATCTACATAAGCACCCATTTAGTTCACATACCATACAAATGTTAG
585 ACTAAG-GAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAG
68723 TATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACA
649 TATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACA
68788 ACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTT
714 ACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTT
* *
68853 CTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGT
779 CTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGT
68918 ATCGATACCTTTCTTCTAG
844 ATCGATACCTTTCTTCTAG
* *
68937 AATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
* * *
69002 GAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATCAGTACTCCC
66 AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
** * *
69067 TTTCAGTATCGATACCATTTCTCCATCCAGATTCAAAGGTATCGATACCATTTAGGCATTCTAGA
131 TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
* *
69132 ATCCATGATATCGATACATTTCTCCTAGTATACCGATACTTCTATTCTATGGTATCA-GTACTCC
196 ATCCATGGTATCGATACCTTTCTCCTAG--TACCGATACTTCTATTCTATGGTAT-ATGTACTCC
* * *
69196 CTTTCAGTATCGATACCATTTCTCTATCTGGATGCCAAGGTATCAATACCTTTCTCTTAGTATTG
258 CTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTG
* *
69261 ATATCTTTATGCCAAATACACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTATTAAACTAAA
323 ATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAA
*
69326 AATTATTCATAATATCAATTCCACACACATTATAAACATATATTATATAAGGTAAAACATACATT
388 AATTATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATT
* * *
69391 AATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCTCAACCCATATAATTACATTATATGCA
453 AATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCA
* *
69456 CTCACCTAAAATACTGTAGTGACGTCCAACTACTCGACAACTTTTTCCTTGCCCTTTTTCTTACC
518 CTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACC
* * *
69521 TAACTAAGGAGCTTGGTTATAATCTACAAAAGCACCCATTTAGTACACATACCACACAAATGTTA
583 TGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTA
* * *
69586 GTATATTATCTAACATTTATACTTTAGTAATAATGAAAAGTACTAATACTATTAATTTCTATAAC
648 GTATATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAAC
*
69651 AACTTCAACCTCTCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACT
713 AACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACT
* * *
69716 TCTATACTACGATACCGATACTCCCTTTTAGTATCGATACCATTTCGGTATTCTGGAATCCATAG
778 TCTATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAG
*
69781 TATCGATACCTTTCTTTTAG
843 TATCGATACCTTTCTTCTAG
69801 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTC-T
* * *
69866 G-AATCCATGGTATCGATACCTTTCTCCTAGTTCCGATACTTCTATTGTATGGTATCAGTACTCC
65 GAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCC
* * *
69930 CTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGTATCGCTACC
130 GTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACC
69980 TTTCTCATAG
Statistics
Matches: 9278, Mismatches: 348, Indels: 56
0.96 0.04 0.01
Matches are distributed among these distances:
856 1 0.00
857 812 0.09
858 15 0.00
859 1 0.00
860 386 0.04
861 1752 0.19
862 5532 0.60
863 6 0.00
864 769 0.08
865 4 0.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (862 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
AAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACTTCTATTCTATGGTATCAGTACTCCG
TTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCATTTAGGCATTCTGGA
ATCCATGGTATCGATACCTTTCTCCTAGTACCGATACTTCTATTCTATGGTATATGTACTCCCTT
TCAGTATCGATACCATTTCTCCATCTGGATTCCAAGGTATCGATACCTTTCTCTTAGTATTGATA
TCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCATTTTAAAACAGTTCTTAAACTAAAAAT
TATTCATAATATCAATTCCACACACATTATAAACATATATCATATAAGGTAAAACATACATTAAT
TTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTCAACCCATATAATTACAATATATGCACTC
ACCTAATATACTGTAGTGACGTCCAACTACTCGACAACTTTGTCCTTGCCCTTTTTCTTACCTGA
CTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTTAGTACACATACCATACAAATGTTAGTA
TATTATCTAACATTTATACTTTAGTAATACTCAAAAGTACTAATACTTTTAATTTCTATAACAAC
TTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGGTACCCATACTATGATATCGATACTTCT
ATACTATGATACCGAAACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGGAATCCATAGTAT
CGATACCTTTCTTCTAG
Found at i:65533 original size:95 final size:95
Alignment explanation
Indices: 65394--65667 Score: 295
Period size: 95 Copynumber: 2.9 Consensus size: 95
65384 CATACTATGA
* ** * *
65394 TATCTATACTTCTATACTATTATAC-CGAAACTCCCTTTCAGTATCGATACCATTTCTGTATTCT
1 TATCCATACTTCTATACTATGGT-CTCGATACTCCCTTTCAGTATCGATACCATTTCTGCATTCT
* * * * *
65458 GGAATCCATAGTATCTATACCTTTTTTCTAG
65 GAAATCCATAGTATCGATACCTCTCTCCTAG
* * **
65489 TATCGATACTTCTATACTATGGTCTCGATACTCCCTTTCAGTATCAATACCATTTAGGCATTCTG
1 TATCCATACTTCTATACTATGGTCTCGATACTCCCTTTCAGTATCGATACCATTTCTGCATTCTG
*
65554 AAATCCATGGTATCGATACCTCTCTCCTAG
66 AAATCCATAGTATCGATACCTCTCTCCTAG
* * * * *
65584 TACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTCTCCA-TCT
1 TATCCATACTTCTATACTATGGTCTCGA-TACTCCCTTTCAGTATCGATACCATTTCTGCATTCT
* *
65647 GGATTCCA-AGGTATCGATACC
65 GAAATCCATA-GTATCGATACC
65668 ATTTAGGCAT
Statistics
Matches: 150, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
94 22 0.15
95 128 0.85
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.38
Consensus pattern (95 bp):
TATCCATACTTCTATACTATGGTCTCGATACTCCCTTTCAGTATCGATACCATTTCTGCATTCTG
AAATCCATAGTATCGATACCTCTCTCCTAG
Found at i:65666 original size:33 final size:34
Alignment explanation
Indices: 65624--65708 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
65614 CTCCGTTTCA
*
65624 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
65657 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
65691 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
65709 TAGTACCGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 21 0.49
34 22 0.51
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:65687 original size:128 final size:128
Alignment explanation
Indices: 65529--65795 Score: 473
Period size: 128 Copynumber: 2.1 Consensus size: 128
65519 CTCCCTTTCA
*
65529 GTATCAATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACT
*
65594 TCTATTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* * *
65657 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACT
65722 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
65785 GTATCGATACC
1 GTATCGATACC
65796 TTTCTCTTAG
Statistics
Matches: 133, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
127 1 0.01
128 132 0.99
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:66382 original size:95 final size:95
Alignment explanation
Indices: 66256--66501 Score: 316
Period size: 95 Copynumber: 2.6 Consensus size: 95
66246 CATACTATGA
* * * * * *
66256 TATCGATACTTCTATACTACGATACCGATACTCCCTTTTAGTATCGATACAATTTCGGAATTCTA
1 TATCCATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGAATT-TA
*
66321 G-AATCCATAGTATCGATACCTTTCTTCTAG
65 GAAATCCATAGTATCGATACCTTTCTCCTAG
* * * *
66351 TATCTATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTTTG
1 TATCCATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGAATTTAG
*
66416 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * **
66446 TACCCATACTTCTATTCTATGGTATC-AGTACTCAGTTTCAGTATCGATACCATTTC
1 TATCCATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
66502 TCCATCTGGA
Statistics
Matches: 132, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
94 3 0.02
95 129 0.98
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (95 bp):
TATCCATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGAATTTAG
AAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:66528 original size:33 final size:34
Alignment explanation
Indices: 66486--66570 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 34
66476 CTCAGTTTCA
* *
66486 GTATCGATACCATTTCTCCA-TCTGGATTCTAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
66519 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
66553 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
66571 TAGTACCGAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:66556 original size:34 final size:33
Alignment explanation
Indices: 66486--66563 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
66476 CTCAGTTTCA
** * *
66486 GTATCGATACCATTTCTCCATCTGGATTCTAAG
1 GTATCGATACCATTTAGCCATCTGGAATCCAAG
* *
66519 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTAGCCA-TCTGGAATCCAAG
66553 GTATCGATACC
1 GTATCGATACC
66564 TTTCTCCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
33 17 0.45
34 21 0.55
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (33 bp):
GTATCGATACCATTTAGCCATCTGGAATCCAAG
Found at i:66619 original size:128 final size:128
Alignment explanation
Indices: 66391--66657 Score: 455
Period size: 128 Copynumber: 2.1 Consensus size: 128
66381 CTCCCTTTCA
*
66391 GTATCGATACCATTTAGGCATTTTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* * *
66456 TCTATTCTATGGTATCAGTACTCAGTTTCAGTATCGATACCATTTCTCCATCTGGATTCTAAG
66 TCTATTCTATGGTATCAGTACTCACTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAG
* *
66519 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
*
66584 TCTATTCTATGGTAT-ATGTACTCCCTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCA-GTACTCACTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAG
66647 GTATCGATACC
1 GTATCGATACC
66658 TTTCTCTTAG
Statistics
Matches: 131, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
127 1 0.01
128 130 0.99
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATCAGTACTCACTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:67257 original size:95 final size:95
Alignment explanation
Indices: 67119--67363 Score: 332
Period size: 95 Copynumber: 2.6 Consensus size: 95
67109 ATACTATGAT
* * * *
67119 ATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCT-A
1 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGA
* *
67183 GAATCCATAGTATCGATACCTTTCTTCTAGA
66 -AATCCATAGTATCGATACCTCTCTCCTAGA
* *
67214 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCAATACCATTTAGGCATTCTGA
1 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGA
* *
67279 AATCCATGGTATCGATACCTCTCTCCTAGT
66 AATCCATAGTATCGATACCTCTCTCCTAGA
* * * *
67309 ACCCATACTTCTATTCTATGGTATC-AGTACTCCGTTTCAGTATCGATACCATTTC
1 ATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
67364 TCCATCTGGA
Statistics
Matches: 132, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
94 1 0.01
95 130 0.98
96 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (95 bp):
ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTCTGA
AATCCATAGTATCGATACCTCTCTCCTAGA
Found at i:67390 original size:33 final size:34
Alignment explanation
Indices: 67348--67431 Score: 109
Period size: 34 Copynumber: 2.5 Consensus size: 34
67338 CTCCGTTTCA
*
67348 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
67381 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
67415 GTATCGATACC-TTTCTC
1 GTATCGATACCATTTCTC
67432 TTAGTACCGA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 20 0.48
34 22 0.52
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.35
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:67416 original size:128 final size:128
Alignment explanation
Indices: 67253--67519 Score: 446
Period size: 128 Copynumber: 2.1 Consensus size: 128
67243 CTCCCTTTCA
*
67253 GTATCAATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACT
*
67318 TCTATTCTATGGTATCA-GTACTCCGTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTAT-ATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
* * * *
67381 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCTTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACT
* *
67446 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCTAT
66 TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
67509 GTATCGATACC
1 GTATCGATACC
67520 TTTCTCTTAG
Statistics
Matches: 130, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
127 1 0.01
128 129 0.99
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTCTCTCCTAGTACCCATACT
TCTATTCTATGGTATATGTACTCCCTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:68106 original size:95 final size:95
Alignment explanation
Indices: 67980--68225 Score: 323
Period size: 95 Copynumber: 2.6 Consensus size: 95
67970 CATACTATGA
* * * * * *
67980 TATCGATACTTCTATACTACGATACCGATACTCCCTTTTAGTATCGATACAATTTCGGAATTCTG
1 TATCCATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGAATTCTG
* *
68045 GAATCCATAGTATCGATACCTTTCTTCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * * *
68075 TATCTATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTTTG
1 TATCCATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGAATTCTG
*
68140 AAATCCATGGTATCGATACCTTTCTCCTAG
66 AAATCCATAGTATCGATACCTTTCTCCTAG
* * **
68170 TACCCATACTTCTATTCTATGGTATC-AGTACTCAGTTTCAGTATCGATACCATTTC
1 TATCCATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
68226 TCCATCTGGA
Statistics
Matches: 132, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
94 1 0.01
95 131 0.99
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (95 bp):
TATCCATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGAATTCTG
AAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:68252 original size:33 final size:34
Alignment explanation
Indices: 68210--68294 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
68200 CTCAGTTTCA
*
68210 GTATCGATACCATTTCTCCA-TCTGGATTCCAAG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
*** *
68243 GTATCGATACCATTTAGGCATTCTGGAATCCATG
1 GTATCGATACCATTTCTCCATTCTGGAATCCAAG
68277 GTATCGATACC-TTTCTCC
1 GTATCGATACCATTTCTCC
68295 TAGTACCGAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 21 0.49
34 22 0.51
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (34 bp):
GTATCGATACCATTTCTCCATTCTGGAATCCAAG
Found at i:68343 original size:128 final size:128
Alignment explanation
Indices: 68115--68381 Score: 464
Period size: 128 Copynumber: 2.1 Consensus size: 128
68105 CTCCCTTTCA
*
68115 GTATCGATACCATTTAGGCATTTTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
* *
68180 TCTATTCTATGGTATCAGTACTCAGTTTCAGTATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCAGTACTCACTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAG
* *
68243 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
*
68308 TCTATTCTATGGTAT-ATGTACTCCCTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAG
66 TCTATTCTATGGTATCA-GTACTCACTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAG
68371 GTATCGATACC
1 GTATCGATACC
68382 TTTCTCTTAG
Statistics
Matches: 132, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
127 1 0.01
128 131 0.99
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTCTGAAATCCATGGTATCGATACCTTTCTCCTAGTACCCATACT
TCTATTCTATGGTATCAGTACTCACTTTCAATATCGATACCATTTCTCCATCTGGATTCCAAG
Found at i:68981 original size:95 final size:95
Alignment explanation
Indices: 68843--69087 Score: 375
Period size: 95 Copynumber: 2.6 Consensus size: 95
68833 ATACTATGAT
* * * * *
68843 ATCGATACTTCTATACTACGATACCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTGG
1 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGG
*
68908 AATCCATAGTATCGATACCTTTCTTCTAGA
66 AATCCATAGTATCGATACCTTTCTCCTAGA
*
68938 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTATGG
1 ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGG
* *
69003 AATCCATGGTATCGATACCTTTCTCCTAGT
66 AATCCATAGTATCGATACCTTTCTCCTAGA
* *
69033 ACCGATACTTCTATTCTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTC
1 ATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTC
69088 TCCATCCAGA
Statistics
Matches: 137, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
94 1 0.01
95 136 0.99
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (95 bp):
ATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGCATTATGG
AATCCATAGTATCGATACCTTTCTCCTAGA
Found at i:69213 original size:130 final size:128
Alignment explanation
Indices: 68977--69219 Score: 432
Period size: 130 Copynumber: 1.9 Consensus size: 128
68967 CTCCCTTTCA
* * *
68977 GTATCGATACCATTTAGGCATTATGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTATAGAATCCATGATATCGATACATTTCTCCTAGTACCGATACT
69042 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCCAGATTCAAAG
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCCAGATTCAAAG
*
69105 GTATCGATACCATTTAGGCATTCTAGAATCCATGATATCGATACATTTCTCCTAGTATACCGATA
1 GTATCGATACCATTTAGGCATTATAGAATCCATGATATCGATACATTTCTCCTAG--TACCGATA
69170 CTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTC
64 CTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTC
69220 TATCTGGATG
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
128 51 0.47
130 58 0.53
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (128 bp):
GTATCGATACCATTTAGGCATTATAGAATCCATGATATCGATACATTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCCATCCAGATTCAAAG
Found at i:69845 original size:95 final size:95
Alignment explanation
Indices: 69706--69997 Score: 360
Period size: 95 Copynumber: 3.1 Consensus size: 95
69696 CATACTATGA
* * * *
69706 TATCGATACTTCTATACTACGATACCGATACTCCCTTTTAGTATCGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
**
69771 GAATCCATAGTATCGATACCTTTCTTTTAG
66 GAATCCATAGTATCGATACCTTTCTCCTAG
* * *
69801 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTT
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
*
69866 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTCCTAG
** *
69896 T-TCCGATACTTCTATTGTATGGTATC-AGTACTCCCTTTCAGTATCGATACCATTTC--TCAAT
1 TAT-CGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGT-ATT
* * *
69957 CTGGATTCCA-AGGTATCGCTACCTTTCTCATAG
63 CTGGAATCCATA-GTATCGATACCTTTCTCCTAG
*
69990 TATTGATA
1 TATCGATA
69998 TCTTTATGCC
Statistics
Matches: 171, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
94 36 0.21
95 135 0.79
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
GAATCCATAGTATCGATACCTTTCTCCTAG
Found at i:70584 original size:95 final size:95
Alignment explanation
Indices: 70440--70726 Score: 377
Period size: 95 Copynumber: 3.0 Consensus size: 95
70430 CATACTATGA
* * * * *
70440 TATCGATACTTTTATACTACGATACCGATACTCCCTTTCAGTATAGATACCATTTCGGTATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
70505 GAATCCATAGTATCGATACCTTTCTTCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* *
70535 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTAGGCATTCTG
1 TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
* *
70600 GAATCCATGGTATCGATACCTTTCTCCTAG
66 GAATCCATAGTATCGATACCTTTCTTCTAG
* * * *
70630 TACCGATACTTCTATTCTATGGTGTC-AGTACTCCCTTTCAGTATCGATACCATTTC--TCAATC
1 TATCGATACTTCTATACTATGGTATCGA-TACTCCCTTTCAGTATCGATACCATTTCGGT-ATTC
*
70692 TGGATTCCA-AGGTATCGATACCTTTC-TCTTAG
64 TGGAATCCATA-GTATCGATACCTTTCTTC-TAG
70724 TAT
1 TAT
70727 TGTTATCTTT
Statistics
Matches: 169, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
93 1 0.01
94 32 0.19
95 136 0.80
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (95 bp):
TATCGATACTTCTATACTATGGTATCGATACTCCCTTTCAGTATCGATACCATTTCGGTATTCTG
GAATCCATAGTATCGATACCTTTCTTCTAG
Found at i:71195 original size:22 final size:22
Alignment explanation
Indices: 71163--71205 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
71153 TTATCGGTAC
71163 CTATACAATGGTA-TCAATACTT
1 CTATACAATGGTACT-AATACTT
*
71185 CTATACTATGGTACTAATACT
1 CTATACAATGGTACTAATACT
71206 CCCTTTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (22 bp):
CTATACAATGGTACTAATACTT
Found at i:71332 original size:95 final size:94
Alignment explanation
Indices: 71173--71373 Score: 244
Period size: 95 Copynumber: 2.1 Consensus size: 94
71163 CTATACAATG
* * * * *
71173 GTATCAATACTTCTATACTATGGTACTAATACTCCCTTTTAGTATCGATACCATTTTGGAATTCT
1 GTATCGATACTTATATACTATGGTACCAATACTCCCTTTCAGTATCAATACCATTTT-GAATTCT
*
71238 GGAATCCATGGTATCGATACCTTTCTCCTA
65 GGAATCCAAGGTATCGATACCTTTCTCCTA
*
71268 GTA-CTGATACTTATATACTATGGTACCAATACTCCCTTTCAGTATTAATACCATTTCT-ATATT
1 GTATC-GATACTTATATACTATGGTACCAATACTCCCTTTCAGTATCAATACCATTT-TGA-ATT
* * * * *
71331 CTGGATTCTAAGGTATTGATATCTTTCTCTTA
63 CTGGAATCCAAGGTATCGATACCTTTCTCCTA
71363 GTATCGATACT
1 GTATCGATACT
71374 CACATCAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
94 2 0.02
95 86 0.96
96 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (94 bp):
GTATCGATACTTATATACTATGGTACCAATACTCCCTTTCAGTATCAATACCATTTTGAATTCTG
GAATCCAAGGTATCGATACCTTTCTCCTA
Found at i:71334 original size:734 final size:734
Alignment explanation
Indices: 69105--71373 Score: 3673
Period size: 734 Copynumber: 3.1 Consensus size: 734
69095 AGATTCAAAG
* * *
69105 GTATCGATACCATTTAGGCATTCTAGAATCCATGATATCGATACATTTCTCCTAGTATACCGATA
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAG--TACCGATA
* *
69170 CTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCTATCTGGATGCCAAG
64 CTTCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAG
* *
69235 GTATCAATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATACACAGTTAGGCATTTATCTTT
129 GTATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTT
*
69300 CATTTTAAAACAGTTATTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACAT
194 CATTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACAT
* *
69365 ATATTATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTGAGTCTCCCT
259 ATATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTAAGTCTCCCT
* *
69430 CAACCCATATAATTACATTATATGCACTCACCTAAAATACTGTAGTGACGTCCAACTACTCGACA
324 CAACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACA
* *
69495 ACTTTTTCCTTGCCCTTTTTCTTACCTAACTAAGGAGCTTGGTTATAATCTACAAAAGCACCCAT
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACAAAAGCACCCAT
* *
69560 TTAGTACACATACCACACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATGAAAA
454 TTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATAAAAA
* *
69625 GTACTAATACTATTAATTTCTATAACAACTTCAACCTCTCTTATAATTCCTGGCTCAATAGTATC
519 GTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATC
69690 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTTAGTATCGATA
584 GGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTTAGTATCGATA
*
69755 CCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTTTAGTATCGATACTTCTATACTA
649 CCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTA
69820 TGGTATCGATACTCCCTTTCA
714 TGGTATCGATACTCCCTTTCA
* *
69841 GTATCGATACCATTTAGGCATTCTTGAATCCATGGTATCGATACCTTTCTCCTAGTTCCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
69906 TCTATTGTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
* * *
69971 ATCGCTACCTTTCTCATAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTAA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
*
70036 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTTTAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
* *
70101 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGAATTATTGTAAGTCTCCCTTA
261 ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTAAGTCTCCCTCA
70166 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
326 ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
* *
70231 TTTGTCTTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACACAAGCACCCATTT
391 TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACAAAAGCACCCATTT
* *
70296 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATATTCAAAAGT
456 AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATAAAAAGT
*
70361 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCAG
521 ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
* * *
70426 TACCCATACTATGATATCGATACTTTTATACTACGATACCGATACTCCCTTTCAGTATAGATACC
586 TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTTAGTATCGATACC
70491 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
651 ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
70556 GTATCGATACTCCCTTTCA
716 GTATCGATACTCCCTTTCA
70575 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
*
70640 TCTATTCTATGGTGTCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
66 TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
*
70705 ATCGATACCTTTCTCTTAGTATTGTTATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
131 ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
70770 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
196 TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
*
70835 ATCATATTAA-GTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTTAGTCTCCCTC
261 ATCATA-TAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTAAGTCTCCCTC
* * ** * * * *
70899 AACCCATATAATTACAACATATAG-ACTCACCTGATATGTTGTAGTGACATCTAACTACTCAATA
325 AACCCATATAATTACAATATAT-GCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACA
* * * * *
70963 ACTTTGTCCTTGCCTTTTTTCCTGCCTGACTCAA-GAGCGTGGTTATAATCTACATAAGCACCCA
389 ACTTTGTCCTTGCCCTTTTTCTTACCTGACT-AAGGAGCTTGGTTATAATCTACAAAAGCACCCA
* * *
71027 TTTAGTTCACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAATAATACTAAAA
453 TTTAGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATAAAA
* * * *
71092 AGTACTATTATTTTTAATTTCTATAACAACTTCAGCCTATCTTATAATTCCTGGCTCAATATTAT
518 AGTACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTAT
* * * * * * **
71157 CGGTACCTATACAATGGTATCAATACTTCTATACTATGGTACTAATACTCCCTTTTAGTATCGAT
583 CGGTACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTTAGTATCGAT
* * * * *
71222 ACCATTTTGGAATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTA-CTGATACTTATATAC
648 ACCATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATC-GATACTTCTATAC
* *
71286 TATGGTACCAATACTCCCTTTCA
712 TATGGTATCGATACTCCCTTTCA
** **** * * * * * * *
71309 GTATTAATACCATTTCTATATTCTGGATTCTAAGGTATTGATATCTTTCTCTTAGTATCGATACT
1 GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
71374 CACATCAGTA
Statistics
Matches: 1429, Mismatches: 100, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
733 1 0.00
734 1370 0.96
735 6 0.00
736 52 0.04
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (734 bp):
GTATCGATACCATTTAGGCATTCTGGAATCCATGGTATCGATACCTTTCTCCTAGTACCGATACT
TCTATTCTATGGTATCAGTACTCCCTTTCAGTATCGATACCATTTCTCAATCTGGATTCCAAGGT
ATCGATACCTTTCTCTTAGTATTGATATCTTTATGCCAAATGCACAGTTAGGCATTTATCTTTCA
TTTTAAAACAGTTCTTAAACTAAAAATTATTCATAATATCAATTCCACACACATTATAAACATAT
ATCATATAAGGTAAAACATACATTAATTTAAACATTTGAGGTGGACTTATTGTAAGTCTCCCTCA
ACCCATATAATTACAATATATGCACTCACCTAATATACTGTAGTGACGTCCAACTACTCGACAAC
TTTGTCCTTGCCCTTTTTCTTACCTGACTAAGGAGCTTGGTTATAATCTACAAAAGCACCCATTT
AGTACACATACCATACAAATGTTAGTATATTATCTAACATTTATACTTTAGTAATAATAAAAAGT
ACTAATACTTTTAATTTCTATAACAACTTCAACCTATCTTATAATTCCTGGCTCAATAGTATCGG
TACCCATACTATGATATCGATACTTCTATACTACGATACCGATACTCCCTTTTAGTATCGATACC
ATTTCGGTATTCTGGAATCCATAGTATCGATACCTTTCTTCTAGTATCGATACTTCTATACTATG
GTATCGATACTCCCTTTCA
Found at i:71403 original size:20 final size:18
Alignment explanation
Indices: 71360--71405 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
71350 TATCTTTCTC
71360 TTAGTATCGATACTCACA
1 TTAGTATCGATACTCACA
* *
71378 TCAGTATCGATACAATTACA
1 TTAGTATCGATAC--TCACA
71398 TTAGTATC
1 TTAGTATC
71406 AATATCGCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.52
20 11 0.48
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (18 bp):
TTAGTATCGATACTCACA
Found at i:75698 original size:79 final size:79
Alignment explanation
Indices: 75609--75779 Score: 261
Period size: 79 Copynumber: 2.2 Consensus size: 79
75599 ATTCCAAATA
* * * *
75609 ATTATACTTTTATGTTGATAATGCAACCATATACATTTCAGCTATGGCATTCTTTCATGCCAATA
1 ATTATTCTTTTATGTTGACAATGCAACCATATACATTTCAGCTATGACATCCTTTCATGCCAATA
* * *
75674 ATGCACTCATATGC
66 ATGCACCCAAAAGC
* *
75688 ATTATTCTTTTATGTTGACAATGTACCCATATACATTTCAGCTATGACATCCTTTCATGCCAATA
1 ATTATTCTTTTATGTTGACAATGCAACCATATACATTTCAGCTATGACATCCTTTCATGCCAATA
75753 ATGCACCCAAAAGC
66 ATGCACCCAAAAGC
75767 ATTATTCTTTTAT
1 ATTATTCTTTTAT
75780 TTCATTCGTT
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 83 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (79 bp):
ATTATTCTTTTATGTTGACAATGCAACCATATACATTTCAGCTATGACATCCTTTCATGCCAATA
ATGCACCCAAAAGC
Done.