genome.fa.s9151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009151.1 Hibiscus syriacus cultivar Beakdansim tig00112677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  218317

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8400--8560	41	4.0	41	84	7	213	30	19	14	34	1.92
8401--8559	82	2.0	81	92	3	266	30	20	14	35	1.92
8589--8786	42	4.8	42	76	8	172	24	22	19	33	1.97
11888--11924	15	2.5	15	95	4	67	24	29	27	18	1.98
12851--12927	20	3.8	20	73	10	66	28	19	23	28	1.98
48979--49017	21	1.9	20	84	5	51	35	20	15	28	1.93
51633--51673	22	2.0	21	85	9	57	29	9	7	53	1.60
61910--62109	80	2.5	80	88	4	278	27	24	12	36	1.90
62079--62333	68	3.8	68	93	0	438	29	24	14	31	1.95
66894--67173	81	3.5	81	88	1	391	28	23	11	36	1.90
67145--67531	68	5.7	68	85	3	501	31	22	13	32	1.92
67145--67531	136	2.9	136	88	0	569	31	22	13	32	1.92
81554--82207	140	4.7	140	86	2	841	33	17	20	27	1.95
82379--82413	17	2.1	17	88	0	52	51	45	0	2	1.16
83718--83808	33	2.8	33	100	0	182	21	21	24	31	1.98
85057--85092	14	2.6	14	90	0	54	25	2	11	61	1.43
91074--91123	21	2.4	21	93	0	82	24	24	16	36	1.94
91132--91199	20	3.4	20	83	0	91	33	23	16	26	1.95
92036--92089	24	2.2	24	93	0	90	20	18	20	40	1.91
94519--94587	20	3.5	20	90	4	104	37	26	20	15	1.93
94500--94639	33	4.0	33	79	14	129	40	22	22	15	1.91
94669--94764	33	2.8	33	90	3	138	13	23	19	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94862--94898	14	2.6	14	86	0	56	48	21	0	29	1.50
96161--96247	21	4.1	21	74	0	84	22	19	36	20	1.95
96727--96794	20	3.4	20	83	4	84	39	23	16	20	1.91
96844--97036	20	10.3	20	78	14	171	20	18	19	41	1.91
97551--97597	18	2.6	18	79	0	58	12	12	42	31	1.81
98920--98973	20	2.7	20	88	0	81	38	25	18	16	1.92
99322--99387	22	3.0	22	81	0	78	22	15	37	24	1.92
99585--99677	20	4.7	20	91	0	141	21	18	19	40	1.91
99671--99719	21	2.3	21	82	0	71	36	16	24	22	1.94
99695--99782	40	2.2	40	82	10	108	28	18	27	26	1.98
101782--101851	22	3.1	23	83	4	63	52	5	2	38	1.40
101801--101851	23	2.3	22	89	3	75	52	3	0	43	1.19
103555--103619	23	2.9	23	81	2	69	40	4	0	55	1.21
103861--103901	20	2.0	20	85	0	55	36	0	0	63	0.95
104106--104144	20	2.0	20	89	0	60	51	2	2	43	1.29
111323--111349	13	2.1	13	100	0	54	44	18	29	7	1.77
113082--113131	22	2.3	22	82	3	57	26	14	16	44	1.85
120327--120356	13	2.3	13	94	0	51	43	6	20	30	1.77
120275--120466	98	2.0	98	83	4	244	33	17	19	29	1.95
120425--120489	13	5.0	13	90	0	76	36	20	18	24	1.94
125733--125975	29	8.7	29	82	8	215	36	4	21	37	1.74
133307--133500	29	6.7	27	76	12	156	38	6	19	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133308--133500	58	3.3	57	80	8	194	37	6	19	36	1.77
133367--133473	30	3.7	30	80	10	114	37	7	16	38	1.77
136476--136504	2	14.5	2	100	0	58	48	0	0	51	1.00
141871--141945	23	3.3	22	68	20	64	53	5	2	38	1.38
141857--141957	46	2.2	46	94	0	175	50	5	4	38	1.48
142532--142634	24	4.3	24	76	1	91	55	14	8	21	1.66
146642--146813	44	3.9	44	75	4	168	31	20	28	19	1.97
146940--146982	12	3.6	12	87	9	61	53	11	16	18	1.72
146943--147010	24	2.9	24	78	6	68	55	13	11	19	1.67
148646--148815	44	3.9	44	80	6	195	31	23	27	18	1.97
148907--149000	24	3.9	24	72	8	75	51	11	12	24	1.73
149151--149201	17	3.1	16	73	21	52	35	13	11	39	1.82
154364--154588	112	2.0	112	97	0	423	33	9	9	47	1.69
154388--154611	112	2.0	111	87	5	285	35	10	10	43	1.73
168110--168145	18	1.9	18	88	5	54	27	30	27	13	1.94
170997--171281	87	3.2	86	88	3	399	22	21	25	31	1.98
171025--171283	89	2.9	89	88	5	402	20	23	25	30	1.99
175979--176028	26	1.9	26	91	0	82	28	12	26	34	1.92
176903--176938	18	2.0	18	88	0	54	27	16	0	55	1.42
182863--182898	14	2.6	14	86	4	56	22	16	27	33	1.95
185139--185314	74	2.3	76	85	3	239	21	23	30	23	1.99
187919--188003	20	4.1	20	73	15	64	16	25	35	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193763--193961	75	2.6	75	83	3	247	21	24	31	22	1.98
194676--194750	32	2.4	32	86	2	98	37	29	21	12	1.89
204319--204368	25	2.0	26	96	4	93	22	18	16	44	1.87
205243--205272	14	2.1	14	100	0	60	33	13	33	20	1.91
206815--206866	10	4.9	11	81	6	63	50	0	5	44	1.26
206813--206866	21	2.6	21	96	0	99	51	0	5	42	1.25

Tables:   1

The End!